Wall clock time and date at job start Fri Apr 10 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 111.00168 * 2 1 4 4 C 1.52993 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.53034 * 109.46271 * 175.00181 * 4 3 2 6 6 C 1.53192 * 109.31802 * 181.37580 * 5 4 3 7 7 N 1.46933 * 108.77332 * 305.36774 * 6 5 4 8 8 S 1.65595 * 120.62849 * 233.58481 * 7 6 5 9 9 O 1.42105 * 106.40149 * 203.53935 * 8 7 6 10 10 O 1.42098 * 106.40317 * 336.45808 * 8 7 6 11 11 N 1.65606 * 107.22013 * 90.00117 * 8 7 6 12 12 C 1.46489 * 120.00129 * 89.99663 * 11 8 7 13 13 C 1.46504 * 119.99819 * 269.99910 * 11 8 7 14 14 C 1.50693 * 109.47172 * 94.99586 * 13 11 8 15 15 H 1.08000 * 119.99929 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00099 * 179.97438 * 14 13 11 17 17 N 1.31510 * 119.99920 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00030 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46919 * 120.00298 * 18 16 14 21 21 H 1.48500 * 109.46804 * 239.99842 * 18 16 14 22 22 C 1.46925 * 118.73831 * 53.85449 * 7 6 5 23 23 C 1.53036 * 109.45237 * 295.06736 * 4 3 2 24 24 H 1.08996 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47173 * 299.99972 * 1 2 3 26 26 H 1.09004 * 109.46658 * 59.99608 * 1 2 3 27 27 H 1.00903 * 110.99580 * 236.04969 * 2 1 3 28 28 H 1.09001 * 109.46476 * 60.00215 * 3 2 1 29 29 H 1.08999 * 109.47435 * 300.00712 * 3 2 1 30 30 H 1.09003 * 109.45945 * 55.03412 * 4 3 2 31 31 H 1.09000 * 109.49815 * 61.42437 * 5 4 3 32 32 H 1.09001 * 109.49818 * 301.32784 * 5 4 3 33 33 H 1.08994 * 109.59097 * 185.58192 * 6 5 4 34 34 H 1.08995 * 109.70267 * 65.21951 * 6 5 4 35 35 H 1.08998 * 109.47302 * 90.00098 * 12 11 8 36 36 H 1.09005 * 109.47350 * 210.00090 * 12 11 8 37 37 H 1.08996 * 109.47412 * 330.00152 * 12 11 8 38 38 H 1.08996 * 109.47155 * 215.00149 * 13 11 8 39 39 H 1.09007 * 109.47086 * 334.99657 * 13 11 8 40 40 H 0.97001 * 120.00062 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.58173 * 65.93172 * 22 7 6 42 42 H 1.08999 * 109.58418 * 186.35104 * 22 7 6 43 43 H 1.08999 * 109.49828 * 298.56911 * 23 4 3 44 44 H 1.09007 * 109.50076 * 58.66727 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 6 4.0730 2.7539 -0.1251 6 6 5.6039 2.7063 -0.1587 7 7 6.0804 1.9784 1.0254 8 16 7.1971 2.6591 2.0413 9 8 7.8416 1.5825 2.7083 10 8 7.8974 3.6296 1.2753 11 7 6.3601 3.4938 3.2012 12 6 5.9616 2.8240 4.4415 13 6 6.0182 4.9022 2.9868 14 6 4.6246 5.0005 2.4220 15 1 4.0507 4.1036 2.2412 16 6 4.0817 6.2354 2.1370 17 7 4.7803 7.3275 2.3576 18 14 2.3538 6.3572 1.4376 19 1 1.7847 4.9942 1.2843 20 1 1.5009 7.1485 2.3605 21 1 2.4023 7.0259 0.1125 22 6 5.5519 0.6329 1.2877 23 6 4.0175 0.7060 1.3080 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6460 1.8949 -0.8899 30 1 3.8725 0.7320 -0.8414 31 1 3.7462 3.3464 0.7294 32 1 3.7029 3.2064 -1.0450 33 1 6.0014 3.7211 -0.1482 34 1 5.9358 2.1930 -1.0611 35 1 6.7491 2.9395 5.1861 36 1 5.0399 3.2699 4.8153 37 1 5.7991 1.7640 4.2460 38 1 6.0641 5.4358 3.9361 39 1 6.7262 5.3454 2.2863 40 1 4.3983 8.1964 2.1574 41 1 5.8776 -0.0474 0.5007 42 1 5.9151 0.2793 2.2526 43 1 3.6912 1.3178 2.1491 44 1 3.6079 -0.2991 1.4082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440440501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:18 Heat of formation + Delta-G solvation = -102.743020 kcal Electronic energy + Delta-G solvation = -25608.647234 eV Core-core repulsion = 22107.401991 eV Total energy + Delta-G solvation = -3501.245243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.76508 -38.35460 -37.17482 -36.90358 -36.84225 -34.45053 -33.40030 -31.88975 -29.61255 -28.16365 -26.75358 -25.12277 -24.20459 -24.10255 -22.84819 -21.14845 -19.78517 -18.80673 -18.55435 -18.17390 -17.32587 -16.65135 -16.46551 -15.79765 -15.68347 -15.53328 -15.21920 -15.01519 -14.91563 -14.49249 -14.17820 -14.04886 -13.94603 -13.90092 -13.43633 -13.37371 -13.07682 -12.98976 -12.91287 -12.78621 -12.68632 -12.51656 -12.44795 -12.40674 -12.11205 -11.85471 -11.74217 -11.44136 -11.29649 -11.06829 -10.56879 -9.90823 -9.66346 -9.34310 -8.13784 -6.25542 -0.27823 1.40586 1.43125 1.53377 1.99942 2.43053 2.60119 3.18746 3.32335 3.40371 3.77775 3.85910 4.09593 4.13167 4.28681 4.35748 4.50515 4.53171 4.60220 4.64601 4.70806 4.72664 4.76879 4.82647 4.89414 4.92008 5.01631 5.05481 5.05820 5.14547 5.20307 5.29359 5.39915 5.45534 5.53313 5.63148 5.74244 5.86460 6.01494 6.04350 6.16782 6.54874 6.88179 7.43697 8.95216 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.008087 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.936616 B = 3461.723451 C = 5266.683719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.066 3.934 4 C -0.070 4.070 5 C -0.140 4.140 6 C 0.132 3.868 7 N -0.998 5.998 8 S 2.795 3.205 9 O -1.006 7.006 10 O -1.017 7.017 11 N -1.004 6.004 12 C 0.101 3.899 13 C 0.257 3.743 14 C -0.527 4.527 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.932 5.932 18 Si 0.947 3.053 19 H -0.250 1.250 20 H -0.288 1.288 21 H -0.283 1.283 22 C 0.118 3.882 23 C -0.111 4.111 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.349 0.651 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.263 0.737 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.048 0.952 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 -15.797 -5.217 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.063 4.063 4 C -0.089 4.089 5 C -0.179 4.179 6 C 0.007 3.993 7 N -0.840 5.840 8 S 2.805 3.195 9 O -0.990 6.990 10 O -1.001 7.001 11 N -0.845 5.845 12 C -0.045 4.045 13 C 0.134 3.866 14 C -0.566 4.566 15 H 0.101 0.899 16 C -0.186 4.186 17 N -0.573 5.573 18 Si 0.772 3.228 19 H -0.173 1.173 20 H -0.214 1.214 21 H -0.209 1.209 22 C -0.007 4.007 23 C -0.150 4.150 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.168 0.832 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.780 -15.767 -4.581 17.406 hybrid contribution -1.264 1.403 -0.932 2.106 sum -7.044 -14.364 -5.513 16.921 Atomic orbital electron populations 1.22204 0.87431 1.02519 1.00074 1.60361 1.08135 1.13703 1.50356 1.21938 0.94800 0.89766 0.99816 1.20990 0.93552 0.95428 0.98922 1.22095 0.94851 0.97827 1.03127 1.21307 0.94977 0.95941 0.87104 1.57947 1.61427 1.26239 1.38357 1.01277 0.73883 0.71771 0.72584 1.93506 1.74084 1.55851 1.75536 1.93511 1.72372 1.62595 1.71613 1.57588 1.74278 1.21790 1.30832 1.21414 1.00989 0.96631 0.85475 1.18781 0.95601 0.75932 0.96331 1.21924 1.00039 0.93065 1.41567 0.89920 1.25730 1.01268 0.95451 0.96135 1.70080 1.39018 0.98437 1.49716 0.85674 0.80201 0.79057 0.77837 1.17304 1.21396 1.20925 1.21742 0.94833 0.81584 1.02540 1.21866 0.93672 1.02308 0.97172 0.89974 0.92714 0.95971 0.83232 0.92911 0.95229 0.89401 0.91655 0.90629 0.91918 0.89422 0.92842 0.90836 0.90578 0.96551 0.96595 0.92810 0.89187 0.89873 0.93361 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 127.69 1.37 1.80 16 2 N -0.69 -12.49 6.28 -537.14 -3.38 -15.87 16 3 C 0.07 1.47 5.07 86.30 0.44 1.91 16 4 C -0.07 -1.57 2.29 -10.77 -0.02 -1.60 16 5 C -0.14 -4.06 5.36 30.67 0.16 -3.89 16 6 C 0.13 4.15 6.38 86.36 0.55 4.70 16 7 N -1.00 -32.35 3.34 -512.28 -1.71 -34.06 16 8 S 2.80 112.90 6.07 -56.49 -0.34 112.55 16 9 O -1.01 -40.76 15.92 -128.00 -2.04 -42.80 16 10 O -1.02 -48.92 15.41 -128.00 -1.97 -50.89 16 11 N -1.00 -41.95 3.23 -543.25 -1.75 -43.70 16 12 C 0.10 3.41 10.31 127.77 1.32 4.72 16 13 C 0.26 13.04 5.41 85.63 0.46 13.50 16 14 C -0.53 -26.64 8.99 25.60 0.23 -26.41 16 15 H 0.08 3.91 5.51 -2.91 -0.02 3.90 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.93 -53.81 13.29 21.45 0.28 -53.52 16 18 Si 0.95 41.07 29.54 68.60 2.03 43.10 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 C 0.12 2.93 6.41 86.51 0.55 3.48 16 23 C -0.11 -2.58 5.28 30.82 0.16 -2.41 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.02 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.35 4.99 8.82 -89.69 -0.79 4.20 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.35 5.31 -2.39 -0.01 2.34 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.41 7.13 -2.39 -0.02 2.39 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 37 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 38 H 0.02 0.88 8.11 -2.39 -0.02 0.86 16 39 H 0.02 0.92 6.92 -2.38 -0.02 0.90 16 40 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.08 7.12 -2.39 -0.02 2.06 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.92 7.72 -2.38 -0.02 1.90 16 Total: -1.00 -66.17 356.39 -3.00 -69.18 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.19 Total: 19.05 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.68 Total: -3.04 kcal Atomic # 7 Polarization: -140.60 SS G_CDS: -6.55 Total: -147.15 kcal Atomic # 8 Polarization: -89.68 SS G_CDS: -4.01 Total: -93.69 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 112.90 SS G_CDS: -0.34 Total: 112.55 kcal Total: -66.17 -3.00 -69.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440440501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.564 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds