Wall clock time and date at job start Fri Apr 10 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 120.00080 * 2 1 4 4 C 1.50703 * 109.47064 * 275.00439 * 3 2 1 5 5 H 1.07996 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47116 * 59.99536 * 8 6 4 10 10 H 1.48500 * 109.46585 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46730 * 299.99515 * 8 6 4 12 12 S 1.65596 * 120.00265 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40201 * 23.53282 * 12 2 1 14 14 O 1.42095 * 106.40562 * 156.45652 * 12 2 1 15 15 N 1.65601 * 107.21751 * 269.99699 * 12 2 1 16 16 C 1.46930 * 120.63126 * 269.71505 * 15 12 2 17 17 C 1.52755 * 109.00959 * 233.58694 * 16 15 12 18 18 C 1.53047 * 109.38234 * 305.58565 * 17 16 15 19 19 C 1.53044 * 109.53677 * 61.24447 * 18 17 16 20 20 H 1.08996 * 109.52464 * 58.60054 * 19 18 17 21 21 C 1.52995 * 109.49597 * 178.68190 * 19 18 17 22 22 C 1.52994 * 109.47448 * 294.83716 * 21 19 18 23 23 N 1.46903 * 109.47440 * 180.02562 * 22 21 19 24 24 C 1.46929 * 120.63059 * 89.99841 * 15 12 2 25 25 H 1.08993 * 109.47522 * 90.00073 * 1 2 3 26 26 H 1.08998 * 109.46906 * 210.00311 * 1 2 3 27 27 H 1.09003 * 109.46940 * 329.99268 * 1 2 3 28 28 H 1.09002 * 109.47068 * 35.00407 * 3 2 1 29 29 H 1.09001 * 109.47372 * 155.00495 * 3 2 1 30 30 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.58183 * 353.42198 * 16 15 12 32 32 H 1.08998 * 109.58277 * 113.84095 * 16 15 12 33 33 H 1.09007 * 109.56451 * 185.55877 * 17 16 15 34 34 H 1.08998 * 109.39093 * 65.51666 * 17 16 15 35 35 H 1.09003 * 109.46068 * 301.21972 * 18 17 16 36 36 H 1.09001 * 109.44556 * 181.25762 * 18 17 16 37 37 H 1.09004 * 109.47254 * 54.83660 * 21 19 18 38 38 H 1.09000 * 109.47087 * 174.83325 * 21 19 18 39 39 H 1.09004 * 109.46847 * 300.00192 * 22 21 19 40 40 H 1.09000 * 109.47296 * 59.99737 * 22 21 19 41 41 H 1.00902 * 110.99817 * 56.04472 * 23 22 21 42 42 H 1.00900 * 110.99839 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.58309 * 246.15783 * 24 15 12 44 44 H 1.08993 * 109.58683 * 6.58223 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9287 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5034 3.6470 -0.6707 8 14 3.1782 3.5668 -3.4209 9 1 1.8316 3.7733 -4.0117 10 1 3.9208 4.8528 -3.4208 11 1 3.9230 2.5646 -4.2245 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1565 -0.5450 15 7 2.5382 -1.8592 1.5810 16 6 3.7469 -1.4244 2.2943 17 6 4.4362 -2.6474 2.8965 18 6 3.4375 -3.4180 3.7632 19 6 2.2707 -3.8971 2.8963 20 1 2.6491 -4.5302 2.0938 21 6 1.2894 -4.6953 3.7569 22 6 1.9695 -5.9721 4.2550 23 7 1.0271 -6.7389 5.0808 24 6 1.5541 -2.6836 2.2957 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6501 2.0043 0.5895 29 1 3.1858 1.1177 0.4342 30 1 3.9675 4.4802 -0.8473 31 1 4.4245 -0.9308 1.5977 32 1 3.4720 -0.7337 3.0915 33 1 5.2783 -2.3266 3.5099 34 1 4.7951 -3.2921 2.0943 35 1 3.0608 -2.7653 4.5507 36 1 3.9343 -4.2785 4.2113 37 1 0.9803 -4.0918 4.6103 38 1 0.4147 -4.9580 3.1619 39 1 2.2786 -6.5757 3.4016 40 1 2.8442 -5.7095 4.8500 41 1 0.1797 -6.9392 4.5709 42 1 1.4528 -7.5877 5.4217 43 1 1.0969 -2.0976 3.0930 44 1 0.7856 -3.0205 1.6002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440814295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:22 Heat of formation + Delta-G solvation = -115.018919 kcal Electronic energy + Delta-G solvation = -24623.998062 eV Core-core repulsion = 21122.220495 eV Total energy + Delta-G solvation = -3501.777566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90576 -38.38171 -37.23071 -36.87794 -36.49421 -34.52602 -33.52125 -32.64182 -29.69502 -28.33920 -26.81641 -25.69555 -24.21246 -23.81210 -22.43899 -20.97684 -19.82432 -19.02078 -18.33665 -18.28992 -17.32966 -16.81560 -16.56161 -16.13457 -15.73087 -15.55232 -15.29334 -15.06298 -14.96779 -14.79431 -14.33927 -14.09109 -14.02861 -13.94341 -13.40195 -13.29865 -13.09993 -13.07513 -12.98107 -12.94997 -12.50783 -12.47904 -12.40753 -12.18554 -11.99832 -11.92305 -11.80430 -11.68679 -11.39925 -11.16288 -10.61253 -10.00948 -9.77191 -9.57489 -8.22073 -6.34157 -0.39250 1.37566 1.41025 1.48323 2.00885 2.38196 2.54349 3.08398 3.31915 3.59947 3.66271 3.89387 3.98263 4.00948 4.12840 4.22170 4.37476 4.40455 4.54188 4.58067 4.64933 4.68484 4.74783 4.83315 4.85617 4.90494 4.93656 5.01719 5.07053 5.13864 5.15762 5.26139 5.31673 5.38740 5.44462 5.53664 5.62115 5.70056 5.94290 6.08945 6.27044 6.62481 6.73138 7.34522 8.85262 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030353 B = 0.003730 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.253771 B = 7504.550683 C = 7837.960359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.006 6.006 3 C 0.274 3.726 4 C -0.553 4.553 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.278 1.278 12 S 2.790 3.210 13 O -1.007 7.007 14 O -1.008 7.008 15 N -1.002 6.002 16 C 0.112 3.888 17 C -0.129 4.129 18 C -0.106 4.106 19 C -0.096 4.096 20 H 0.062 0.938 21 C -0.105 4.105 22 C 0.061 3.939 23 N -0.860 5.860 24 C 0.117 3.883 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.017 0.983 30 H 0.268 0.732 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.345 0.655 42 H 0.349 0.651 43 H 0.087 0.913 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -16.522 13.360 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.847 5.847 3 C 0.150 3.850 4 C -0.592 4.592 5 H 0.066 0.934 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.198 1.198 11 H -0.204 1.204 12 S 2.800 3.200 13 O -0.991 6.991 14 O -0.992 6.992 15 N -0.844 5.844 16 C -0.013 4.013 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.116 4.116 20 H 0.080 0.920 21 C -0.143 4.143 22 C -0.070 4.070 23 N -0.391 5.391 24 C -0.008 4.008 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.105 0.895 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.697 -16.172 13.100 21.138 hybrid contribution 0.307 0.144 -1.678 1.712 sum -3.390 -16.028 11.422 19.971 Atomic orbital electron populations 1.21437 0.78090 1.03289 1.01704 1.57645 1.15707 1.22185 1.89202 1.18619 0.90410 0.80161 0.95819 1.21794 1.36461 1.06781 0.94182 0.93361 1.25726 0.94699 0.96666 1.01490 1.69989 1.37663 1.15749 1.32772 0.85665 0.78838 0.77661 0.79922 1.18870 1.19827 1.20353 1.01461 0.72326 0.72383 0.73835 1.93486 1.67520 1.60448 1.77671 1.93544 1.42692 1.85486 1.77456 1.58057 1.30238 1.64951 1.31121 1.21493 0.84976 0.97926 0.96950 1.21817 0.98957 0.96232 0.99789 1.21577 0.95040 1.00372 0.97366 1.21441 0.96656 0.95456 0.98091 0.91965 1.21474 0.97567 0.96030 0.99242 1.21812 0.95734 0.94137 0.95276 1.58737 1.09215 1.27539 1.43571 1.21703 0.90098 0.91784 0.97182 0.93890 0.89958 0.90205 0.95337 0.96537 0.92259 0.91539 0.89960 0.88691 0.92713 0.90545 0.89957 0.90458 0.91705 0.95802 0.90431 0.84261 0.83829 0.89451 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.45 10.33 127.77 1.32 4.77 16 2 N -1.01 -43.05 3.23 -543.23 -1.75 -44.80 16 3 C 0.27 14.15 5.12 85.63 0.44 14.59 16 4 C -0.55 -32.08 9.38 25.60 0.24 -31.84 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.80 5.46 84.65 0.46 1.26 16 7 N -0.92 -54.40 13.29 21.45 0.28 -54.11 16 8 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 9 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 S 2.79 115.14 6.05 -56.49 -0.34 114.80 16 13 O -1.01 -42.47 15.80 -128.00 -2.02 -44.49 16 14 O -1.01 -50.62 15.69 -128.00 -2.01 -52.63 16 15 N -1.00 -30.75 3.35 -513.85 -1.72 -32.47 16 16 C 0.11 3.13 6.45 86.22 0.56 3.69 16 17 C -0.13 -2.73 6.06 30.53 0.19 -2.54 16 18 C -0.11 -1.77 4.96 30.62 0.15 -1.62 16 19 C -0.10 -1.81 2.34 -10.72 -0.03 -1.83 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.10 -1.56 4.94 30.59 0.15 -1.41 16 22 C 0.06 0.82 6.54 86.30 0.56 1.39 16 23 N -0.86 -10.46 9.62 -186.72 -1.80 -12.26 16 24 C 0.12 2.73 5.76 86.36 0.50 3.22 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 2.27 7.79 -2.39 -0.02 2.25 16 27 H 0.08 2.51 7.94 -2.39 -0.02 2.49 16 28 H 0.03 1.49 7.96 -2.39 -0.02 1.47 16 29 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.07 2.27 6.91 -2.39 -0.02 2.25 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.11 6.51 -2.39 -0.02 1.10 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.08 1.00 6.54 -2.39 -0.02 0.99 16 41 H 0.34 3.59 8.99 -89.69 -0.81 2.79 16 42 H 0.35 3.20 9.08 -89.69 -0.81 2.39 16 43 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 2.03 6.92 -2.39 -0.02 2.01 16 Total: -1.00 -72.60 359.04 -3.42 -76.02 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.63 Total: 13.06 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.54 Total: -10.32 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -4.99 Total: -143.64 kcal Atomic # 8 Polarization: -93.10 SS G_CDS: -4.03 Total: -97.13 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 115.14 SS G_CDS: -0.34 Total: 114.80 kcal Total: -72.60 -3.42 -76.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440814295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.000 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds