Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99650 * 2 1 4 4 C 1.50704 * 109.47039 * 274.72201 * 3 2 1 5 5 H 1.08000 * 119.99653 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00260 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99965 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46944 * 90.00167 * 8 6 4 10 10 H 1.48496 * 109.47176 * 210.00158 * 8 6 4 11 11 H 1.48500 * 109.46986 * 330.00150 * 8 6 4 12 12 S 1.65597 * 120.00323 * 179.72274 * 2 1 3 13 13 O 1.42097 * 106.40434 * 203.54335 * 12 2 1 14 14 O 1.42102 * 106.40164 * 336.46230 * 12 2 1 15 15 N 1.65597 * 107.21668 * 90.00027 * 12 2 1 16 16 C 1.46495 * 120.00096 * 68.09663 * 15 12 2 17 17 H 1.09001 * 109.47040 * 341.71293 * 16 15 12 18 18 C 1.53001 * 109.47666 * 101.71926 * 16 15 12 19 19 N 1.46897 * 109.46791 * 301.69012 * 18 16 15 20 20 C 1.53006 * 109.47205 * 221.72090 * 16 15 12 21 21 C 1.54273 * 110.02867 * 300.55427 * 20 16 15 22 22 C 1.54889 * 104.19051 * 217.10268 * 21 20 16 23 23 C 1.54891 * 102.75267 * 37.94128 * 22 21 20 24 24 C 1.53866 * 110.03362 * 183.38611 * 20 16 15 25 25 H 1.09001 * 109.47070 * 270.27362 * 1 2 3 26 26 H 1.08997 * 109.47529 * 30.27350 * 1 2 3 27 27 H 1.08999 * 109.47148 * 150.27737 * 1 2 3 28 28 H 1.08998 * 109.47570 * 34.72365 * 3 2 1 29 29 H 1.09000 * 109.46934 * 154.72146 * 3 2 1 30 30 H 0.96998 * 119.99539 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99756 * 248.09171 * 15 12 2 32 32 H 1.09001 * 109.46806 * 61.68879 * 18 16 15 33 33 H 1.08992 * 109.47338 * 181.68940 * 18 16 15 34 34 H 1.00900 * 111.00339 * 63.30833 * 19 18 16 35 35 H 1.00898 * 111.00008 * 187.26691 * 19 18 16 36 36 H 1.09002 * 110.01522 * 61.99072 * 20 16 15 37 37 H 1.08996 * 110.48636 * 335.77865 * 21 20 16 38 38 H 1.08996 * 110.48902 * 98.42678 * 21 20 16 39 39 H 1.08996 * 110.75835 * 279.62424 * 22 21 20 40 40 H 1.09005 * 110.91203 * 156.33026 * 22 21 20 41 41 H 1.08995 * 110.48953 * 203.37447 * 23 22 21 42 42 H 1.09006 * 110.59838 * 80.78556 * 23 22 21 43 43 H 1.09007 * 110.02952 * 238.56671 * 24 20 16 44 44 H 1.09000 * 110.03833 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3472 1.7623 -1.4160 5 1 1.9375 1.1884 -2.2340 6 6 3.0074 2.9464 -1.6671 7 7 3.5069 3.6449 -0.6710 8 14 3.1926 3.5585 -3.4223 9 1 2.0336 4.4189 -3.7713 10 1 4.4466 4.3446 -3.5427 11 1 3.2445 2.3986 -4.3482 12 16 2.2930 -1.4340 0.0069 13 8 3.5759 -1.1541 0.5501 14 8 1.4114 -2.4038 0.5560 15 7 2.5381 -1.8662 -1.5728 16 6 3.4399 -1.0779 -2.4163 17 1 3.5964 -0.0983 -1.9646 18 6 4.7820 -1.8013 -2.5436 19 7 5.3585 -2.0023 -1.2075 20 6 2.8196 -0.9059 -3.8044 21 6 2.5793 -2.2861 -4.4504 22 6 2.8993 -2.0646 -5.9496 23 6 4.1107 -1.1004 -5.9018 24 6 3.7932 -0.1522 -4.7271 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6476 2.0058 0.5854 29 1 3.1838 1.1189 0.4388 30 1 3.9710 4.4781 -0.8477 31 1 2.0846 -2.6413 -1.9395 32 1 4.6294 -2.7684 -3.0227 33 1 5.4629 -1.2006 -3.1464 34 1 4.7713 -2.6014 -0.6467 35 1 6.2959 -2.3702 -1.2697 36 1 1.8793 -0.3600 -3.7278 37 1 3.2517 -3.0298 -4.0227 38 1 1.5407 -2.5914 -4.3231 39 1 2.0558 -1.6000 -6.4601 40 1 3.1716 -3.0033 -6.4322 41 1 4.1896 -0.5405 -6.8336 42 1 5.0316 -1.6510 -5.7094 43 1 3.3251 0.7593 -5.0991 44 1 4.7075 0.0916 -4.1860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447252129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = -84.550197 kcal Electronic energy + Delta-G solvation = -26081.928992 eV Core-core repulsion = 22581.472648 eV Total energy + Delta-G solvation = -3500.456343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.04948 -36.50389 -35.43429 -35.23845 -34.95831 -32.46104 -32.35218 -29.36229 -28.46295 -27.74195 -25.31400 -25.00460 -22.29375 -22.05481 -20.59544 -18.83153 -18.64082 -17.11250 -16.74155 -16.39599 -16.09012 -15.65074 -15.25500 -14.91820 -14.55521 -14.30259 -14.09216 -13.39394 -13.24087 -13.18835 -12.54106 -12.28079 -12.14352 -12.12374 -11.88686 -11.58488 -11.56446 -11.19109 -11.16868 -11.07596 -10.99001 -10.85507 -10.72017 -10.60879 -10.48874 -10.38266 -10.27062 -10.07877 -9.85503 -9.60563 -9.03023 -8.45857 -8.01095 -7.95891 -6.08175 -4.14460 1.45748 3.25088 3.31403 3.34752 3.66388 4.30203 4.37793 4.70466 4.79034 4.88561 5.06085 5.23191 5.26363 5.44896 5.48510 5.62892 5.65297 5.68547 5.73508 5.81707 5.85686 5.88154 5.93178 6.01896 6.12544 6.16557 6.25098 6.29703 6.36456 6.44374 6.55418 6.62282 6.70237 6.90759 7.35850 7.43833 7.56704 7.64591 7.75270 7.89241 7.91450 8.18873 8.89802 9.50449 10.99275 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.009622 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.111737 B = 2909.149943 C = 4494.943587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.998 5.998 3 C 0.242 3.758 4 C -0.540 4.540 5 H 0.067 0.933 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.878 3.122 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.253 1.253 12 S 2.779 3.221 13 O -0.952 6.952 14 O -1.012 7.012 15 N -1.124 6.124 16 C 0.152 3.848 17 H 0.136 0.864 18 C 0.049 3.951 19 N -0.828 5.828 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.263 0.737 31 H 0.400 0.600 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.336 0.664 35 H 0.330 0.670 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -10.646 -8.263 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.840 5.840 3 C 0.120 3.880 4 C -0.579 4.579 5 H 0.085 0.915 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.705 3.295 9 H -0.211 1.211 10 H -0.214 1.214 11 H -0.178 1.178 12 S 2.786 3.214 13 O -0.935 6.935 14 O -0.996 6.996 15 N -0.880 5.880 16 C 0.045 3.955 17 H 0.153 0.847 18 C -0.084 4.084 19 N -0.358 5.358 20 C -0.111 4.111 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.165 4.165 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.617 -9.983 -7.239 12.347 hybrid contribution -0.284 -0.536 -1.830 1.928 sum -0.901 -10.519 -9.069 13.918 Atomic orbital electron populations 1.21172 0.80473 1.01846 1.00424 1.57626 1.13971 1.23588 1.88847 1.19246 0.92351 0.78926 0.97500 1.21580 1.36488 1.06863 0.92980 0.91506 1.24935 0.95189 0.96489 0.96956 1.69939 1.36545 1.14965 1.30905 0.86873 0.77450 0.79594 0.85544 1.21068 1.21377 1.17787 1.02025 0.73567 0.72544 0.73260 1.93660 1.39239 1.84411 1.76152 1.93534 1.67652 1.61267 1.77189 1.56154 1.58949 1.40296 1.32628 1.21227 0.86498 0.97008 0.90768 0.84689 1.22315 0.96920 0.98362 0.90790 1.58507 1.05691 1.58125 1.13513 1.21968 0.99718 0.95482 0.93884 1.22546 1.01011 0.97733 0.95150 1.22460 0.98157 0.98818 0.96592 1.22370 0.97912 0.97423 0.98427 1.22420 0.99871 0.98508 0.95700 0.94005 0.90989 0.93112 0.94796 0.92713 0.92675 0.76894 0.96107 0.90388 0.84965 0.85789 0.89935 0.91266 0.92051 0.91804 0.92256 0.92221 0.92036 0.90899 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 10.31 59.84 0.62 2.49 16 2 N -1.00 -20.43 3.22 -123.05 -0.40 -20.83 16 3 C 0.24 5.89 5.30 -5.19 -0.03 5.87 16 4 C -0.54 -13.34 7.13 -34.44 -0.25 -13.59 16 5 H 0.07 1.56 6.11 -52.49 -0.32 1.24 16 6 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 8 Si 0.88 19.47 29.54 -169.99 -5.02 14.45 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.25 -5.07 4.75 56.52 0.27 -4.80 16 12 S 2.78 53.98 5.81 -107.50 -0.62 53.36 16 13 O -0.95 -21.17 13.62 -57.17 -0.78 -21.95 16 14 O -1.01 -20.79 17.21 -57.17 -0.98 -21.78 16 15 N -1.12 -17.90 4.90 -4.89 -0.02 -17.92 16 16 C 0.15 2.52 1.85 -67.93 -0.13 2.39 16 17 H 0.14 2.80 5.12 -51.93 -0.27 2.54 16 18 C 0.05 0.73 5.93 -3.83 -0.02 0.70 16 19 N -0.83 -13.46 8.28 -10.37 -0.09 -13.55 16 20 C -0.09 -1.32 2.73 -89.50 -0.24 -1.56 16 21 C -0.13 -1.50 5.22 -25.07 -0.13 -1.63 16 22 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 23 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 16 24 C -0.13 -1.85 5.75 -25.62 -0.15 -2.00 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 28 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 29 H 0.05 1.48 6.91 -51.93 -0.36 1.12 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.40 5.34 8.01 -34.47 -0.28 5.07 16 32 H 0.02 0.27 6.06 -51.93 -0.31 -0.04 16 33 H 0.08 1.14 6.33 -51.93 -0.33 0.81 16 34 H 0.34 5.53 6.86 -39.29 -0.27 5.26 16 35 H 0.33 4.47 9.08 -39.29 -0.36 4.11 16 36 H 0.08 1.33 7.33 -51.93 -0.38 0.95 16 37 H 0.07 0.79 5.76 -51.93 -0.30 0.49 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.16 6.01 -51.92 -0.31 0.85 16 44 H 0.07 1.10 6.09 -51.93 -0.32 0.79 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.34 339.05 -9.68 -40.02 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -6.85 Total: 15.94 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.77 Total: -8.76 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: 0.23 Total: -76.39 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.76 Total: -43.73 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 53.98 SS G_CDS: -0.62 Total: 53.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.34 -9.68 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447252129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.530 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds