Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99650 * 2 1 4 4 C 1.50704 * 109.47039 * 274.72201 * 3 2 1 5 5 H 1.08000 * 119.99653 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99822 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00260 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99965 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46944 * 90.00167 * 8 6 4 10 10 H 1.48496 * 109.47176 * 210.00158 * 8 6 4 11 11 H 1.48500 * 109.46986 * 330.00150 * 8 6 4 12 12 S 1.65597 * 120.00323 * 179.72274 * 2 1 3 13 13 O 1.42097 * 106.40434 * 203.54335 * 12 2 1 14 14 O 1.42102 * 106.40164 * 336.46230 * 12 2 1 15 15 N 1.65597 * 107.21668 * 90.00027 * 12 2 1 16 16 C 1.46495 * 120.00096 * 68.09663 * 15 12 2 17 17 H 1.09001 * 109.47040 * 341.71293 * 16 15 12 18 18 C 1.53001 * 109.47666 * 101.71926 * 16 15 12 19 19 N 1.46897 * 109.46791 * 301.69012 * 18 16 15 20 20 C 1.53006 * 109.47205 * 221.72090 * 16 15 12 21 21 C 1.54273 * 110.02867 * 300.55427 * 20 16 15 22 22 C 1.54889 * 104.19051 * 217.10268 * 21 20 16 23 23 C 1.54891 * 102.75267 * 37.94128 * 22 21 20 24 24 C 1.53866 * 110.03362 * 183.38611 * 20 16 15 25 25 H 1.09001 * 109.47070 * 270.27362 * 1 2 3 26 26 H 1.08997 * 109.47529 * 30.27350 * 1 2 3 27 27 H 1.08999 * 109.47148 * 150.27737 * 1 2 3 28 28 H 1.08998 * 109.47570 * 34.72365 * 3 2 1 29 29 H 1.09000 * 109.46934 * 154.72146 * 3 2 1 30 30 H 0.96998 * 119.99539 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99756 * 248.09171 * 15 12 2 32 32 H 1.09001 * 109.46806 * 61.68879 * 18 16 15 33 33 H 1.08992 * 109.47338 * 181.68940 * 18 16 15 34 34 H 1.00900 * 111.00339 * 63.30833 * 19 18 16 35 35 H 1.00898 * 111.00008 * 187.26691 * 19 18 16 36 36 H 1.09002 * 110.01522 * 61.99072 * 20 16 15 37 37 H 1.08996 * 110.48636 * 335.77865 * 21 20 16 38 38 H 1.08996 * 110.48902 * 98.42678 * 21 20 16 39 39 H 1.08996 * 110.75835 * 279.62424 * 22 21 20 40 40 H 1.09005 * 110.91203 * 156.33026 * 22 21 20 41 41 H 1.08995 * 110.48953 * 203.37447 * 23 22 21 42 42 H 1.09006 * 110.59838 * 80.78556 * 23 22 21 43 43 H 1.09007 * 110.02952 * 238.56671 * 24 20 16 44 44 H 1.09000 * 110.03833 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3472 1.7623 -1.4160 5 1 1.9375 1.1884 -2.2340 6 6 3.0074 2.9464 -1.6671 7 7 3.5069 3.6449 -0.6710 8 14 3.1926 3.5585 -3.4223 9 1 2.0336 4.4189 -3.7713 10 1 4.4466 4.3446 -3.5427 11 1 3.2445 2.3986 -4.3482 12 16 2.2930 -1.4340 0.0069 13 8 3.5759 -1.1541 0.5501 14 8 1.4114 -2.4038 0.5560 15 7 2.5381 -1.8662 -1.5728 16 6 3.4399 -1.0779 -2.4163 17 1 3.5964 -0.0983 -1.9646 18 6 4.7820 -1.8013 -2.5436 19 7 5.3585 -2.0023 -1.2075 20 6 2.8196 -0.9059 -3.8044 21 6 2.5793 -2.2861 -4.4504 22 6 2.8993 -2.0646 -5.9496 23 6 4.1107 -1.1004 -5.9018 24 6 3.7932 -0.1522 -4.7271 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6476 2.0058 0.5854 29 1 3.1838 1.1189 0.4388 30 1 3.9710 4.4781 -0.8477 31 1 2.0846 -2.6413 -1.9395 32 1 4.6294 -2.7684 -3.0227 33 1 5.4629 -1.2006 -3.1464 34 1 4.7713 -2.6014 -0.6467 35 1 6.2959 -2.3702 -1.2697 36 1 1.8793 -0.3600 -3.7278 37 1 3.2517 -3.0298 -4.0227 38 1 1.5407 -2.5914 -4.3231 39 1 2.0558 -1.6000 -6.4601 40 1 3.1716 -3.0033 -6.4322 41 1 4.1896 -0.5405 -6.8336 42 1 5.0316 -1.6510 -5.7094 43 1 3.3251 0.7593 -5.0991 44 1 4.7075 0.0916 -4.1860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447252129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = -108.248966 kcal Electronic energy + Delta-G solvation = -26082.956647 eV Core-core repulsion = 22581.472648 eV Total energy + Delta-G solvation = -3501.483999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18191 -38.13154 -37.14252 -36.73448 -36.32894 -34.39804 -33.66044 -30.50412 -29.58439 -29.44512 -26.72082 -26.46962 -24.12753 -23.27785 -21.56877 -20.15483 -20.00711 -18.75604 -18.46224 -18.03312 -17.41610 -16.99427 -16.64280 -16.41954 -15.86186 -15.76071 -15.19535 -14.98806 -14.84987 -14.30684 -13.98134 -13.91493 -13.73800 -13.38801 -13.22620 -13.19737 -12.98631 -12.89074 -12.78991 -12.60281 -12.37066 -12.34484 -11.98562 -11.90055 -11.79994 -11.71007 -11.55224 -11.37917 -11.27192 -11.14460 -10.50439 -10.32915 -9.69150 -9.21260 -8.08687 -6.20551 -0.12333 1.47006 1.48763 1.58590 2.12531 2.49631 2.76650 3.23360 3.53287 3.67958 3.82383 3.89549 4.01750 4.16774 4.29997 4.39128 4.49187 4.58836 4.68352 4.72185 4.72883 4.82034 4.86493 4.90659 4.92732 5.07924 5.10051 5.17502 5.22585 5.29412 5.33616 5.37546 5.54153 5.55383 5.61240 5.64004 5.83257 5.94398 6.18685 6.34340 6.46811 6.76227 6.90528 7.48241 8.99044 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.009622 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.111737 B = 2909.149943 C = 4494.943587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.005 6.005 3 C 0.257 3.743 4 C -0.527 4.527 5 H 0.081 0.919 6 C 0.014 3.986 7 N -0.931 5.931 8 Si 0.934 3.066 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.221 1.221 12 S 2.794 3.206 13 O -0.982 6.982 14 O -1.020 7.020 15 N -1.106 6.106 16 C 0.152 3.848 17 H 0.092 0.908 18 C 0.052 3.948 19 N -0.851 5.851 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.132 4.132 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.416 0.584 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.334 0.666 35 H 0.344 0.656 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -12.737 -10.939 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.847 5.847 3 C 0.133 3.867 4 C -0.566 4.566 5 H 0.099 0.901 6 C -0.185 4.185 7 N -0.571 5.571 8 Si 0.759 3.241 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.144 1.144 12 S 2.802 3.198 13 O -0.965 6.965 14 O -1.004 7.004 15 N -0.867 5.867 16 C 0.045 3.955 17 H 0.110 0.890 18 C -0.080 4.080 19 N -0.383 5.383 20 C -0.109 4.109 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.170 4.170 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.251 0.749 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.241 -12.119 -9.929 15.716 hybrid contribution -0.115 0.074 -0.937 0.947 sum -1.356 -12.044 -10.865 16.278 Atomic orbital electron populations 1.21398 0.78598 1.03142 1.01545 1.57561 1.15319 1.22401 1.89377 1.18784 0.90795 0.80059 0.97025 1.21812 1.35152 1.06384 0.93300 0.90098 1.25748 0.95119 0.96934 1.00699 1.70089 1.38206 1.15547 1.33219 0.85978 0.76570 0.79836 0.81670 1.21205 1.22444 1.14368 1.01398 0.72692 0.71957 0.73769 1.93624 1.40802 1.84752 1.77360 1.93517 1.67776 1.61191 1.77944 1.55710 1.58919 1.40695 1.31354 1.21136 0.87781 0.95278 0.91353 0.88967 1.22296 0.95774 0.99534 0.90422 1.58482 1.06723 1.58661 1.14439 1.21926 0.98710 0.97423 0.92853 1.22531 1.01959 0.95731 0.95709 1.22451 0.97716 0.99514 0.95803 1.22353 0.98843 0.97092 0.97330 1.22427 0.99047 0.98724 0.96773 0.93064 0.90889 0.90607 0.96996 0.96151 0.93035 0.74921 0.93210 0.90148 0.85259 0.84245 0.91544 0.90411 0.90989 0.91636 0.90197 0.91371 0.90987 0.92428 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.31 127.77 1.32 4.67 16 2 N -1.01 -41.29 3.22 -543.23 -1.75 -43.04 16 3 C 0.26 12.95 5.30 85.63 0.45 13.41 16 4 C -0.53 -26.43 7.13 25.60 0.18 -26.25 16 5 H 0.08 3.75 6.11 -2.91 -0.02 3.73 16 6 C 0.01 0.75 5.46 84.65 0.46 1.21 16 7 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 8 Si 0.93 40.22 29.54 68.60 2.03 42.25 16 9 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.22 -8.25 4.75 99.48 0.47 -7.77 16 12 S 2.79 107.43 5.81 -56.49 -0.33 107.10 16 13 O -0.98 -44.48 13.62 -128.00 -1.74 -46.22 16 14 O -1.02 -40.53 17.21 -128.00 -2.20 -42.73 16 15 N -1.11 -33.45 4.90 -169.39 -0.83 -34.28 16 16 C 0.15 4.84 1.85 44.99 0.08 4.92 16 17 H 0.09 3.84 5.12 -2.39 -0.01 3.83 16 18 C 0.05 1.45 5.93 86.30 0.51 1.96 16 19 N -0.85 -26.97 8.28 -186.73 -1.55 -28.51 16 20 C -0.09 -2.39 2.73 -10.07 -0.03 -2.42 16 21 C -0.12 -2.41 5.22 31.67 0.17 -2.24 16 22 C -0.12 -2.04 6.91 31.89 0.22 -1.82 16 23 C -0.12 -2.34 6.83 31.67 0.22 -2.13 16 24 C -0.13 -3.54 5.75 31.32 0.18 -3.36 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 27 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 28 H 0.01 0.64 8.11 -2.39 -0.02 0.62 16 29 H 0.02 1.17 6.91 -2.39 -0.02 1.15 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.42 9.96 8.01 -96.74 -0.77 9.19 16 32 H 0.05 1.12 6.06 -2.39 -0.01 1.10 16 33 H 0.08 2.21 6.33 -2.39 -0.02 2.20 16 34 H 0.33 10.71 6.86 -89.69 -0.62 10.10 16 35 H 0.34 8.95 9.08 -89.70 -0.81 8.13 16 36 H 0.07 2.01 7.33 -2.39 -0.02 1.99 16 37 H 0.08 1.41 5.76 -2.39 -0.01 1.40 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.06 1.70 6.01 -2.38 -0.01 1.69 16 44 H 0.06 1.72 6.09 -2.39 -0.01 1.71 16 Total: -1.00 -66.78 339.05 -3.73 -70.51 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -1.40 Total: 40.76 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.77 Total: -12.05 kcal Atomic # 7 Polarization: -155.78 SS G_CDS: -3.84 Total: -159.62 kcal Atomic # 8 Polarization: -85.01 SS G_CDS: -3.95 Total: -88.95 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 107.43 SS G_CDS: -0.33 Total: 107.10 kcal Total: -66.78 -3.73 -70.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447252129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.739 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds