Wall clock time and date at job start Fri Apr 10 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34739 * 116.99801 * 2 1 4 4 O 1.21497 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.47568 * 119.99928 * 180.27887 * 3 2 1 6 6 N 1.30645 * 122.11643 * 354.52729 * 5 3 2 7 7 S 1.56136 * 109.79758 * 180.02562 * 6 5 3 8 8 C 1.71755 * 97.28189 * 359.97438 * 7 6 5 9 9 C 1.34979 * 105.46332 * 359.74154 * 8 7 6 10 10 S 1.76205 * 124.15700 * 180.21803 * 9 8 7 11 11 O 1.42103 * 106.40163 * 357.16610 * 10 9 8 12 12 O 1.42092 * 106.40198 * 130.08743 * 10 9 8 13 13 N 1.65597 * 107.21593 * 243.63002 * 10 9 8 14 14 C 1.46503 * 120.00324 * 65.25207 * 13 10 9 15 15 C 1.50700 * 109.47143 * 164.36554 * 14 13 10 16 16 H 1.07995 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99702 * 179.97438 * 15 14 13 18 18 N 1.31525 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47260 * 59.99761 * 19 17 15 21 21 H 1.48497 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46874 * 299.99678 * 19 17 15 23 23 H 1.09000 * 109.47342 * 299.99705 * 1 2 3 24 24 H 1.09001 * 109.47350 * 60.00251 * 1 2 3 25 25 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08002 * 127.26678 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00094 * 245.25016 * 13 10 9 28 28 H 1.09001 * 109.47078 * 284.36601 * 14 13 10 29 29 H 1.09000 * 109.46962 * 44.36340 * 14 13 10 30 30 H 0.96998 * 119.99433 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2195 -0.0005 5 6 3.5373 1.2778 -0.0062 6 7 4.2890 0.2140 0.0937 7 16 5.7948 0.6251 0.0570 8 6 5.5543 2.3183 -0.1018 9 6 4.2159 2.4911 -0.1255 10 16 3.4230 4.0570 -0.2811 11 8 4.4580 5.0304 -0.3023 12 8 2.4640 3.9196 -1.3205 13 7 2.5678 4.3141 1.1134 14 6 3.2739 4.4714 2.3874 15 6 2.3390 5.0639 3.4101 16 1 1.3206 5.2993 3.1385 17 6 2.7835 5.3044 4.6929 18 7 4.0236 5.0171 5.0238 19 14 1.6245 6.0381 5.9609 20 1 0.4601 5.1357 6.1480 21 1 2.3403 6.1976 7.2521 22 1 1.1520 7.3650 5.4903 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 6.3138 3.0830 -0.1722 27 1 1.5993 4.3607 1.0868 28 1 3.6207 3.4976 2.7332 29 1 4.1287 5.1336 2.2497 30 1 4.3362 5.1860 5.9264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487357321.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:31 Heat of formation + Delta-G solvation = -104.585296 kcal Electronic energy + Delta-G solvation = -21383.824618 eV Core-core repulsion = 17820.034413 eV Total energy + Delta-G solvation = -3563.790205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82060 -39.01714 -36.81299 -36.25772 -35.28538 -34.54452 -32.11392 -32.02927 -28.55142 -26.72658 -26.41301 -22.89387 -22.47264 -20.87933 -19.30310 -18.52713 -18.12173 -17.27573 -16.88306 -16.54528 -15.91631 -15.73293 -15.28509 -14.86451 -14.51126 -14.21569 -13.68165 -13.40015 -13.11338 -12.60499 -12.30935 -12.07483 -11.92702 -11.75336 -11.70937 -11.43813 -11.43169 -10.95405 -10.88246 -10.77164 -10.75004 -10.52351 -10.37791 -10.07868 -9.43676 -9.22432 -8.86374 -8.19107 -6.17399 -4.21264 0.27203 0.74451 1.01004 1.32666 1.53731 2.57442 2.77034 3.27557 3.31541 3.34226 3.68596 4.21147 4.34920 4.38195 4.61689 4.96548 5.10146 5.19381 5.21344 5.29736 5.42802 5.51119 5.82630 6.19207 6.51236 7.27227 7.35068 7.56971 7.81305 7.94329 8.23454 8.83371 9.43402 10.93177 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.005785 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.689118 B = 4838.714039 C = 5267.512950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.532 3.468 4 O -0.459 6.459 5 C 0.144 3.856 6 N -0.502 5.502 7 S 0.512 5.488 8 C -0.165 4.165 9 C -0.684 4.684 10 S 2.715 3.285 11 O -0.961 6.961 12 O -0.954 6.954 13 N -1.085 6.085 14 C 0.246 3.754 15 C -0.526 4.526 16 H 0.067 0.933 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.209 0.791 27 H 0.417 0.583 28 H 0.015 0.985 29 H 0.039 0.961 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -10.980 -9.887 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.252 6.252 3 C 0.369 3.631 4 O -0.343 6.343 5 C -0.029 4.029 6 N -0.336 5.336 7 S 0.666 5.334 8 C -0.314 4.314 9 C -0.779 4.779 10 S 2.794 3.206 11 O -0.951 6.951 12 O -0.944 6.944 13 N -0.850 5.850 14 C 0.123 3.877 15 C -0.566 4.566 16 H 0.085 0.915 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.226 0.774 27 H 0.253 0.747 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.803 -12.163 -10.248 16.150 hybrid contribution -1.870 1.275 1.101 2.517 sum 0.933 -10.888 -9.147 14.251 Atomic orbital electron populations 1.23412 0.75336 1.03900 1.03356 1.86595 1.23809 1.30971 1.83859 1.19911 0.86418 0.82576 0.74212 1.90949 1.65008 1.35245 1.43105 1.19367 0.92587 0.86684 1.04224 1.72258 1.07207 1.32266 1.21877 1.80464 1.04605 0.95007 1.53338 1.27323 0.98629 1.07320 0.98176 1.31932 1.04206 1.23432 1.18366 1.01603 0.73106 0.72406 0.73483 1.93569 1.59527 1.55030 1.86959 1.93553 1.59691 1.86154 1.55036 1.55326 1.19029 1.86697 1.23899 1.19062 0.93207 0.96536 0.78911 1.21165 0.98028 1.42558 0.94835 0.91536 1.24973 0.95424 0.95465 0.98368 1.69930 1.15447 1.47563 1.20161 0.86465 0.80529 0.79770 0.80119 1.20132 1.21132 1.19946 0.91108 0.91303 0.87867 0.77376 0.74654 0.96699 0.94278 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.34 -5.14 10.47 -40.60 -0.42 -5.57 16 3 C 0.53 9.42 7.90 34.54 0.27 9.69 16 4 O -0.46 -8.80 11.31 -26.99 -0.31 -9.10 16 5 C 0.14 2.49 6.66 -84.09 -0.56 1.93 16 6 N -0.50 -7.63 11.21 24.85 0.28 -7.35 16 7 S 0.51 5.71 23.20 -107.50 -2.49 3.22 16 8 C -0.17 -2.22 10.89 29.57 0.32 -1.90 16 9 C -0.68 -11.76 5.95 -40.26 -0.24 -12.00 16 10 S 2.71 54.06 4.94 -107.50 -0.53 53.53 16 11 O -0.96 -20.62 17.08 -57.17 -0.98 -21.59 16 12 O -0.95 -20.09 15.80 -66.66 -1.05 -21.14 16 13 N -1.08 -23.59 4.98 -11.65 -0.06 -23.65 16 14 C 0.25 6.23 5.98 -5.19 -0.03 6.20 16 15 C -0.53 -14.35 9.27 -34.44 -0.32 -14.67 16 16 H 0.07 1.74 7.66 -52.49 -0.40 1.34 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.21 2.23 8.04 -52.49 -0.42 1.81 16 27 H 0.42 8.71 7.82 -34.47 -0.27 8.44 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 1.05 7.73 -51.93 -0.40 0.65 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -34.28 297.94 -7.26 -41.54 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -2.32 Total: 2.16 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 0.41 Total: -7.74 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.96 Total: -55.77 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -2.76 Total: -57.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 59.77 SS G_CDS: -3.03 Total: 56.75 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.28 -7.26 -41.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487357321.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.045 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds