Wall clock time and date at job start Fri Apr 10 2020 17:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34739 * 116.99801 * 2 1 4 4 O 1.21497 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.47568 * 119.99928 * 180.27887 * 3 2 1 6 6 N 1.30645 * 122.11643 * 354.52729 * 5 3 2 7 7 S 1.56136 * 109.79758 * 180.02562 * 6 5 3 8 8 C 1.71755 * 97.28189 * 359.97438 * 7 6 5 9 9 C 1.34979 * 105.46332 * 359.74154 * 8 7 6 10 10 S 1.76205 * 124.15700 * 180.21803 * 9 8 7 11 11 O 1.42103 * 106.40163 * 357.16610 * 10 9 8 12 12 O 1.42092 * 106.40198 * 130.08743 * 10 9 8 13 13 N 1.65597 * 107.21593 * 243.63002 * 10 9 8 14 14 C 1.46503 * 120.00324 * 65.25207 * 13 10 9 15 15 C 1.50700 * 109.47143 * 164.36554 * 14 13 10 16 16 H 1.07995 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99702 * 179.97438 * 15 14 13 18 18 N 1.31525 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47260 * 59.99761 * 19 17 15 21 21 H 1.48497 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46874 * 299.99678 * 19 17 15 23 23 H 1.09000 * 109.47342 * 299.99705 * 1 2 3 24 24 H 1.09001 * 109.47350 * 60.00251 * 1 2 3 25 25 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08002 * 127.26678 * 179.97438 * 8 7 6 27 27 H 0.97001 * 120.00094 * 245.25016 * 13 10 9 28 28 H 1.09001 * 109.47078 * 284.36601 * 14 13 10 29 29 H 1.09000 * 109.46962 * 44.36340 * 14 13 10 30 30 H 0.96998 * 119.99433 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2195 -0.0005 5 6 3.5373 1.2778 -0.0062 6 7 4.2890 0.2140 0.0937 7 16 5.7948 0.6251 0.0570 8 6 5.5543 2.3183 -0.1018 9 6 4.2159 2.4911 -0.1255 10 16 3.4230 4.0570 -0.2811 11 8 4.4580 5.0304 -0.3023 12 8 2.4640 3.9196 -1.3205 13 7 2.5678 4.3141 1.1134 14 6 3.2739 4.4714 2.3874 15 6 2.3390 5.0639 3.4101 16 1 1.3206 5.2993 3.1385 17 6 2.7835 5.3044 4.6929 18 7 4.0236 5.0171 5.0238 19 14 1.6245 6.0381 5.9609 20 1 0.4601 5.1357 6.1480 21 1 2.3403 6.1976 7.2521 22 1 1.1520 7.3650 5.4903 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 6.3138 3.0830 -0.1722 27 1 1.5993 4.3607 1.0868 28 1 3.6207 3.4976 2.7332 29 1 4.1287 5.1336 2.2497 30 1 4.3362 5.1860 5.9264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487357321.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:31 Heat of formation + Delta-G solvation = -131.537226 kcal Electronic energy + Delta-G solvation = -21384.993342 eV Core-core repulsion = 17820.034413 eV Total energy + Delta-G solvation = -3564.958929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03869 -40.19868 -38.33278 -37.61174 -36.92636 -36.44001 -34.11890 -33.20177 -29.63503 -28.72341 -27.50760 -24.48539 -24.12051 -22.16844 -20.54911 -19.96713 -19.46845 -19.02748 -18.10182 -17.83118 -17.62220 -17.09529 -17.07592 -16.30690 -16.01722 -15.36904 -15.21056 -14.72101 -14.56736 -14.26470 -14.06081 -13.57477 -13.40290 -13.27533 -13.07870 -12.99507 -12.75194 -12.67936 -12.54681 -12.27227 -12.09123 -11.88795 -11.75056 -11.55738 -11.44946 -10.83886 -10.25881 -10.10873 -8.26137 -6.37655 -0.84998 -0.68602 -0.26704 0.22916 0.39833 1.43450 1.44833 1.46145 1.50052 1.53979 2.09348 2.41579 2.69502 3.07842 3.09360 3.48993 3.73114 3.99558 4.24156 4.26897 4.32725 4.58482 4.63358 4.68971 5.03086 5.22757 5.29787 5.73154 5.99037 6.26722 6.42861 6.76013 7.31488 8.84987 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.005785 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.689118 B = 4838.714039 C = 5267.512950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.523 3.477 4 O -0.487 6.487 5 C 0.120 3.880 6 N -0.527 5.527 7 S 0.640 5.360 8 C -0.175 4.175 9 C -0.712 4.712 10 S 2.732 3.268 11 O -0.983 6.983 12 O -0.970 6.970 13 N -1.090 6.090 14 C 0.261 3.739 15 C -0.550 4.550 16 H 0.070 0.930 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.268 1.268 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.141 0.859 26 H 0.234 0.766 27 H 0.419 0.581 28 H 0.004 0.996 29 H 0.018 0.982 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -12.252 -9.589 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C 0.362 3.638 4 O -0.373 6.373 5 C -0.051 4.051 6 N -0.364 5.364 7 S 0.794 5.206 8 C -0.324 4.324 9 C -0.812 4.812 10 S 2.816 3.184 11 O -0.973 6.973 12 O -0.960 6.960 13 N -0.853 5.853 14 C 0.136 3.864 15 C -0.590 4.590 16 H 0.088 0.912 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.250 0.750 27 H 0.255 0.745 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.341 -13.399 -9.968 17.031 hybrid contribution -1.893 1.466 0.947 2.575 sum 1.448 -11.933 -9.021 15.029 Atomic orbital electron populations 1.23773 0.73338 1.06391 1.03303 1.86588 1.25833 1.29849 1.83273 1.20247 0.87053 0.82856 0.73682 1.90915 1.65701 1.36062 1.44655 1.19243 0.92614 0.87027 1.06194 1.71927 1.09799 1.32708 1.21970 1.80030 1.00726 0.91345 1.48504 1.27824 0.97806 1.10203 0.96543 1.31372 1.05707 1.21953 1.22131 1.00674 0.72485 0.72744 0.72491 1.93533 1.59770 1.56998 1.87046 1.93525 1.60528 1.86823 1.55163 1.55205 1.19127 1.87697 1.23239 1.18657 0.92536 0.95164 0.80027 1.21563 0.98616 1.42975 0.95816 0.91159 1.25862 0.97037 0.95676 1.00394 1.70034 1.17080 1.48345 1.20834 0.85409 0.78531 0.79087 0.77443 1.19260 1.20455 1.19325 0.91521 0.91073 0.84081 0.74968 0.74533 0.97824 0.96370 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.56 113.37 1.20 1.73 16 2 O -0.34 -10.29 10.47 -56.49 -0.59 -10.88 16 3 C 0.52 18.75 7.90 70.28 0.56 19.31 16 4 O -0.49 -19.22 11.31 27.23 0.31 -18.91 16 5 C 0.12 4.08 6.66 42.09 0.28 4.36 16 6 N -0.53 -15.05 11.21 -75.28 -0.84 -15.90 16 7 S 0.64 12.22 23.20 -56.49 -1.31 10.91 16 8 C -0.17 -4.37 10.89 67.07 0.73 -3.64 16 9 C -0.71 -24.24 5.95 21.83 0.13 -24.11 16 10 S 2.73 111.25 4.94 -56.49 -0.28 110.97 16 11 O -0.98 -42.94 17.08 -128.00 -2.19 -45.13 16 12 O -0.97 -41.89 15.80 -118.93 -1.88 -43.77 16 13 N -1.09 -48.95 4.98 -190.78 -0.95 -49.90 16 14 C 0.26 13.56 5.98 85.63 0.51 14.07 16 15 C -0.55 -30.44 9.27 25.60 0.24 -30.20 16 16 H 0.07 3.73 7.66 -2.91 -0.02 3.70 16 17 C 0.01 0.57 5.46 84.65 0.46 1.04 16 18 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 19 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.23 4.45 8.04 -2.91 -0.02 4.42 16 27 H 0.42 18.20 7.82 -96.74 -0.76 17.44 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.02 1.02 7.73 -2.39 -0.02 1.00 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -74.53 297.94 -0.86 -75.39 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.45 Total: 12.61 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.11 Total: -17.45 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -1.51 Total: -118.58 kcal Atomic # 8 Polarization: -114.34 SS G_CDS: -4.35 Total: -118.69 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 123.47 SS G_CDS: -1.59 Total: 121.88 kcal Total: -74.53 -0.86 -75.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487357321.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.144 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds