Wall clock time and date at job start Fri Apr 10 2020 17:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31746 * 123.76441 * 2 1 4 4 N 1.27571 * 118.27105 * 180.02562 * 3 2 1 5 5 S 1.56508 * 109.22644 * 0.02562 * 4 3 2 6 6 C 1.35346 * 123.77028 * 180.02562 * 2 1 3 7 7 C 1.50702 * 127.92020 * 0.23867 * 6 2 1 8 8 N 1.46497 * 109.47335 * 89.70371 * 7 6 2 9 9 S 1.65595 * 120.00000 * 164.99808 * 8 7 6 10 10 O 1.42102 * 106.40027 * 178.54092 * 9 8 7 11 11 O 1.42099 * 106.40397 * 311.46044 * 9 8 7 12 12 N 1.65596 * 107.21944 * 64.99970 * 9 8 7 13 13 C 1.46493 * 120.00083 * 270.00115 * 12 9 8 14 14 C 1.46506 * 120.00019 * 89.99761 * 12 9 8 15 15 C 1.50700 * 109.47050 * 95.00178 * 14 12 9 16 16 H 1.08008 * 119.99913 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00362 * 180.02562 * 15 14 12 18 18 N 1.31509 * 120.00187 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99322 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46911 * 90.00526 * 19 17 15 21 21 H 1.48499 * 109.46691 * 210.00148 * 19 17 15 22 22 H 1.48491 * 109.47327 * 330.00034 * 19 17 15 23 23 H 1.08997 * 109.46820 * 269.97187 * 1 2 3 24 24 H 1.08998 * 109.47135 * 29.97367 * 1 2 3 25 25 H 1.09002 * 109.46588 * 149.97453 * 1 2 3 26 26 H 1.09003 * 109.46558 * 209.70395 * 7 6 2 27 27 H 1.09004 * 109.47153 * 329.70026 * 7 6 2 28 28 H 0.97001 * 119.99883 * 344.99791 * 8 7 6 29 29 H 1.08996 * 109.47369 * 90.00161 * 13 12 9 30 30 H 1.09002 * 109.47187 * 209.99799 * 13 12 9 31 31 H 1.08999 * 109.47357 * 329.99346 * 13 12 9 32 32 H 1.09000 * 109.47388 * 215.00075 * 14 12 9 33 33 H 1.08997 * 109.46904 * 335.00391 * 14 12 9 34 34 H 0.97001 * 119.99591 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0005 5 16 3.8806 -0.5472 -0.0017 6 6 2.2594 -1.1251 -0.0005 7 6 1.7859 -2.5558 -0.0061 8 7 1.6305 -3.0134 -1.3891 9 16 1.4855 -4.6305 -1.7148 10 8 1.3178 -4.7430 -3.1214 11 8 2.5303 -5.2786 -1.0023 12 7 0.0664 -5.1427 -1.0322 13 6 0.0541 -5.6411 0.3453 14 6 -1.1769 -5.0974 -1.8059 15 6 -1.4189 -6.4397 -2.4468 16 1 -0.7166 -7.2458 -2.2935 17 6 -2.5363 -6.6385 -3.2298 18 7 -2.7478 -7.8100 -3.7886 19 14 -3.7505 -5.2440 -3.4954 20 1 -3.3539 -4.4642 -4.6954 21 1 -5.1111 -5.8040 -3.6965 22 1 -3.7519 -4.3554 -2.3058 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3632 -0.8898 -0.5143 26 1 2.5176 -3.1825 0.5040 27 1 0.8276 -2.6234 0.5089 28 1 1.6126 -2.3691 -2.1140 29 1 -0.1277 -4.8126 1.0298 30 1 -0.7360 -6.3838 0.4559 31 1 1.0167 -6.0978 0.5751 32 1 -2.0083 -4.8557 -1.1438 33 1 -1.0954 -4.3345 -2.5802 34 1 -3.5341 -7.9499 -4.3391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490423209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:33 Heat of formation + Delta-G solvation = -0.364639 kcal Electronic energy + Delta-G solvation = -21212.500533 eV Core-core repulsion = 17821.355520 eV Total energy + Delta-G solvation = -3391.145013 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.061 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24073 -36.89036 -36.16858 -35.72843 -35.36752 -33.08528 -32.44691 -29.11384 -28.48097 -27.19179 -25.30168 -24.92595 -22.01603 -20.75792 -19.28477 -18.92923 -17.53729 -17.08691 -16.88230 -16.49378 -15.92973 -15.41253 -14.93847 -14.32125 -14.17215 -13.76965 -13.68984 -13.30872 -13.23495 -12.92696 -12.61844 -12.53785 -12.44056 -11.86546 -11.80650 -11.74127 -11.59156 -11.43778 -11.32555 -10.76866 -10.54087 -10.40374 -10.31612 -10.02719 -9.87974 -9.71230 -9.59229 -8.65093 -8.24811 -6.13624 -4.13722 -0.16378 0.76555 0.99095 1.39758 1.88583 3.21719 3.26392 3.27983 3.33984 3.73113 3.90488 4.19322 4.32792 4.34285 4.79974 4.96297 5.10297 5.14504 5.17762 5.25633 5.39403 5.40900 5.62771 5.76421 5.80231 6.10350 6.36248 6.61669 6.79402 6.99572 7.27862 7.44920 7.51045 8.42485 8.90919 9.44874 10.99871 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.021503 B = 0.004405 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.822755 B = 6354.989637 C = 7063.606611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 N -0.242 5.242 4 N -0.288 5.288 5 S 0.443 5.557 6 C -0.274 4.274 7 C 0.207 3.793 8 N -1.134 6.134 9 S 2.781 3.219 10 O -0.955 6.955 11 O -0.989 6.989 12 N -0.989 5.989 13 C 0.091 3.909 14 C 0.227 3.773 15 C -0.535 4.535 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.265 1.265 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.415 0.585 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 14.150 11.083 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.109 5.109 4 N -0.267 5.267 5 S 0.579 5.421 6 C -0.414 4.414 7 C 0.078 3.922 8 N -0.893 5.893 9 S 2.788 3.212 10 O -0.938 6.938 11 O -0.972 6.972 12 N -0.831 5.831 13 C -0.055 4.055 14 C 0.104 3.896 15 C -0.574 4.574 16 H 0.096 0.904 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.699 3.301 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.189 1.189 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.248 0.752 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.248 14.487 10.647 20.694 hybrid contribution -2.457 0.572 -0.388 2.552 sum 7.791 15.058 10.259 19.816 Atomic orbital electron populations 1.20399 0.84651 1.04677 1.03960 1.22356 1.00475 0.86458 1.01186 1.71270 0.96712 1.27672 1.15216 1.78831 1.10546 1.15338 1.21982 1.81609 1.09019 1.00894 1.50545 1.27015 0.99738 1.01963 1.12646 1.19383 1.01950 0.86807 0.84091 1.56520 1.91263 1.28715 1.12800 1.02062 0.73212 0.72414 0.73478 1.93673 1.86116 1.84671 1.29386 1.93544 1.55054 1.73315 1.75284 1.57370 1.25695 1.76964 1.23071 1.21441 1.03771 0.99180 0.81136 1.19455 0.81286 0.98386 0.90462 1.21369 1.09081 0.96813 1.30142 0.90396 1.24875 0.97599 0.95536 0.94919 1.69891 1.28212 1.22521 1.32533 0.86921 0.80982 0.82828 0.79356 1.19810 1.20939 1.18939 0.89629 0.89778 0.89365 0.88473 0.89102 0.75202 0.94144 0.89933 0.91127 0.94745 0.95275 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.02 36.01 0.36 -0.24 16 2 C 0.04 0.42 6.89 -83.66 -0.58 -0.16 16 3 N -0.24 -2.96 11.68 32.45 0.38 -2.58 16 4 N -0.29 -3.42 12.54 60.35 0.76 -2.66 16 5 S 0.44 4.04 23.40 -107.50 -2.52 1.53 16 6 C -0.27 -2.60 6.06 -35.34 -0.21 -2.81 16 7 C 0.21 1.95 6.35 -5.19 -0.03 1.92 16 8 N -1.13 -13.66 6.05 -11.65 -0.07 -13.73 16 9 S 2.78 48.24 6.10 -107.50 -0.66 47.59 16 10 O -0.95 -20.95 17.11 -57.17 -0.98 -21.93 16 11 O -0.99 -18.18 16.21 -57.17 -0.93 -19.11 16 12 N -0.99 -17.84 3.23 -123.06 -0.40 -18.24 16 13 C 0.09 1.32 10.68 59.84 0.64 1.96 16 14 C 0.23 4.95 4.15 -5.19 -0.02 4.93 16 15 C -0.54 -14.63 9.94 -34.44 -0.34 -14.97 16 16 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 19 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.10 0.84 7.75 -51.93 -0.40 0.44 16 27 H 0.09 0.70 7.77 -51.93 -0.40 0.30 16 28 H 0.41 4.49 8.64 -34.47 -0.30 4.20 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 32 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 33 H 0.03 0.63 7.04 -51.93 -0.37 0.27 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -35.23 319.97 -7.65 -42.88 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.88 Total: -0.70 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.28 Total: -7.40 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: 1.44 Total: -63.28 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.90 Total: -41.04 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -3.17 Total: 49.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.23 -7.65 -42.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490423209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.514 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds