Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47154 * 243.11552 * 3 2 1 5 5 C 1.46848 * 111.00178 * 190.00038 * 4 3 2 6 6 C 1.53038 * 109.52224 * 185.84082 * 5 4 3 7 7 C 1.53123 * 109.27984 * 300.81957 * 6 5 4 8 8 C 1.50701 * 109.52172 * 177.55991 * 7 6 5 9 9 O 1.21283 * 120.00242 * 333.20782 * 8 7 6 10 10 N 1.34774 * 119.99770 * 153.47771 * 8 7 6 11 11 C 1.46968 * 120.59404 * 4.36507 * 10 8 7 12 12 C 1.53807 * 108.39990 * 124.75431 * 11 10 8 13 13 N 1.46969 * 108.57662 * 49.63987 * 12 11 10 14 14 C 1.36937 * 120.59601 * 124.62792 * 13 12 11 15 15 H 1.07998 * 119.99893 * 214.09275 * 14 13 12 16 16 C 1.38811 * 119.99834 * 34.08614 * 14 13 12 17 17 N 1.31617 * 120.00302 * 15.66064 * 16 14 13 18 18 Si 1.86802 * 119.99622 * 195.65840 * 16 14 13 19 19 H 1.48497 * 109.47219 * 60.00752 * 18 16 14 20 20 H 1.48503 * 109.46998 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47620 * 300.00054 * 18 16 14 22 22 C 1.46961 * 118.81108 * 304.64280 * 13 12 11 23 23 C 1.46969 * 120.59511 * 184.64419 * 10 8 7 24 24 C 1.53113 * 109.20830 * 57.62586 * 7 6 5 25 25 C 1.46852 * 111.00143 * 314.21164 * 4 3 2 26 26 H 4.40879 * 5.52142 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.46921 * 123.11671 * 3 2 1 28 28 H 1.08999 * 109.47110 * 3.12100 * 3 2 1 29 29 H 1.09005 * 109.46140 * 65.82668 * 5 4 3 30 30 H 1.08999 * 109.45143 * 305.85185 * 5 4 3 31 31 H 1.09000 * 109.49972 * 180.88025 * 6 5 4 32 32 H 1.08999 * 109.53720 * 60.78258 * 6 5 4 33 33 H 1.09000 * 109.52078 * 297.68873 * 7 6 5 34 34 H 1.08999 * 109.60875 * 244.53831 * 11 10 8 35 35 H 1.09005 * 109.61072 * 5.04995 * 11 10 8 36 36 H 1.08999 * 109.74280 * 289.85324 * 12 11 10 37 37 H 1.09001 * 109.67478 * 169.38266 * 12 11 10 38 38 H 0.97001 * 120.00070 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.61440 * 295.48663 * 22 13 12 40 40 H 1.09002 * 109.75312 * 175.05665 * 22 13 12 41 41 H 1.09000 * 109.60758 * 354.94615 * 23 10 8 42 42 H 1.08992 * 109.61122 * 115.28658 * 23 10 8 43 43 H 1.09000 * 109.50803 * 62.31925 * 24 7 6 44 44 H 1.09011 * 109.50147 * 182.43969 * 24 7 6 45 45 H 1.08998 * 109.46090 * 294.17674 * 25 4 3 46 46 H 1.09002 * 109.45800 * 54.15318 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.6271 1.2352 5 6 4.5836 0.8610 1.1688 6 6 5.0808 1.3775 2.5208 7 6 4.3501 2.6784 2.8649 8 6 4.7920 3.1602 4.2227 9 8 5.1934 2.3661 5.0469 10 7 4.7358 4.4728 4.5231 11 6 4.1576 5.4335 3.5730 12 6 3.0399 6.2110 4.2883 13 7 3.5612 6.7082 5.5693 14 6 3.5049 8.0420 5.8742 15 1 4.2920 8.4962 6.4578 16 6 2.4363 8.8103 5.4329 17 7 1.3402 8.2253 4.9985 18 14 2.5540 10.6744 5.4558 19 1 3.6863 11.1095 4.5992 20 1 1.2895 11.2566 4.9387 21 1 2.7793 11.1393 6.8480 22 6 4.1444 5.7483 6.5171 23 6 5.2572 4.9700 5.8041 24 6 2.8411 2.4198 2.8797 25 6 2.4089 1.8718 1.5177 26 1 -1.0501 0.0001 -0.0003 27 1 3.0090 0.5623 -0.8607 28 1 3.0098 -1.0253 -0.0560 29 1 4.7970 1.6004 0.3968 30 1 5.0914 -0.0729 0.9276 31 1 6.1530 1.5657 2.4664 32 1 4.8807 0.6329 3.2914 33 1 4.5827 3.4357 2.1162 34 1 4.9301 6.1249 3.2362 35 1 3.7439 4.8986 2.7180 36 1 2.1910 5.5518 4.4700 37 1 2.7245 7.0519 3.6706 38 1 0.5934 8.7622 4.6905 39 1 3.3742 5.0562 6.8574 40 1 4.5608 6.2813 7.3719 41 1 5.5697 4.1289 6.4230 42 1 6.1079 5.6267 5.6226 43 1 2.6041 1.6920 3.6557 44 1 2.3140 3.3525 3.0815 45 1 2.6325 2.6063 0.7441 46 1 1.3374 1.6720 1.5301 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490688052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = 32.934643 kcal Electronic energy + Delta-G solvation = -25839.781467 eV Core-core repulsion = 22344.808791 eV Total energy + Delta-G solvation = -3494.972675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.52728 -39.70749 -38.38335 -35.70448 -35.49633 -33.48184 -32.85804 -31.85146 -31.75065 -29.06076 -28.05679 -25.71196 -24.82247 -24.21349 -24.07753 -22.22421 -20.98584 -19.92976 -18.98378 -18.77023 -17.78207 -17.37295 -16.79323 -16.46138 -16.31477 -16.02380 -15.73734 -15.54410 -15.29600 -15.05191 -14.94756 -14.69481 -14.44397 -13.99214 -13.85061 -13.60525 -13.32280 -13.18174 -12.97421 -12.64976 -12.57369 -12.47428 -12.26454 -12.18484 -12.04313 -11.96780 -11.69744 -11.64032 -11.57710 -11.29183 -11.05250 -10.66783 -10.55016 -9.80947 -9.27816 -8.60284 -7.90272 -5.44691 1.49191 1.50103 1.57493 1.60409 1.76312 1.93276 2.05049 2.50407 3.07673 3.24849 3.43488 3.47818 3.58286 3.76085 3.81517 4.08078 4.20972 4.22412 4.27349 4.34593 4.36463 4.41482 4.52997 4.55614 4.60199 4.62682 4.69127 4.73683 4.74725 4.81076 4.86583 4.93068 5.01500 5.09429 5.12517 5.14654 5.21184 5.35486 5.50714 5.60414 5.64355 6.01760 6.10459 6.37173 6.50197 6.70998 7.10601 7.18059 7.75725 8.33509 9.14421 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.003595 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.084422 B = 7786.099689 C = 8935.305119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.551 5.551 5 C 0.063 3.937 6 C -0.092 4.092 7 C -0.100 4.100 8 C 0.514 3.486 9 O -0.587 6.587 10 N -0.602 5.602 11 C 0.096 3.904 12 C 0.170 3.830 13 N -0.607 5.607 14 C -0.274 4.274 15 H 0.065 0.935 16 C -0.037 4.037 17 N -0.930 5.930 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.133 3.867 23 C 0.105 3.895 24 C -0.100 4.100 25 C 0.065 3.935 26 H 0.240 0.760 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.104 0.896 36 H -0.001 1.001 37 H 0.066 0.934 38 H 0.253 0.747 39 H 0.003 0.997 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -13.640 -13.216 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.215 4.215 3 C 0.037 3.963 4 N -0.276 5.276 5 C -0.064 4.064 6 C -0.131 4.131 7 C -0.121 4.121 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.334 5.334 11 C -0.028 4.028 12 C 0.043 3.957 13 N -0.330 5.330 14 C -0.404 4.404 15 H 0.083 0.917 16 C -0.234 4.234 17 N -0.574 5.574 18 Si 0.796 3.204 19 H -0.199 1.199 20 H -0.220 1.220 21 H -0.204 1.204 22 C 0.007 3.993 23 C -0.019 4.019 24 C -0.138 4.138 25 C -0.063 4.063 26 H 0.257 0.743 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.018 0.982 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.627 -14.275 -12.441 19.493 hybrid contribution -0.574 1.704 -0.052 1.799 sum 4.052 -12.571 -12.493 18.181 Atomic orbital electron populations 1.25683 0.96915 0.99962 0.98965 1.23333 0.95212 1.01355 1.01629 1.19182 0.84235 1.01712 0.91199 1.62018 1.04896 1.26012 1.34706 1.22130 0.86462 1.01871 0.95932 1.21391 0.99305 0.94652 0.97723 1.21408 0.97366 1.00059 0.93254 1.21188 0.76911 0.81213 0.90349 1.90610 1.49923 1.54564 1.51709 1.48166 1.59442 1.06952 1.18802 1.22582 0.97028 0.91487 0.91729 1.20980 0.91791 0.95760 0.87153 1.44165 1.70959 1.03289 1.14610 1.19407 1.02825 0.84857 1.33316 0.91735 1.25933 0.94012 1.02498 1.00954 1.70151 1.04045 1.35845 1.47372 0.85346 0.76680 0.80273 0.78102 1.19931 1.21958 1.20396 1.21335 0.93659 0.91533 0.92810 1.21995 0.96587 0.98093 0.85268 1.21470 0.92998 1.00932 0.98418 1.22009 0.98715 0.90241 0.95293 0.74342 0.90927 0.86976 0.92827 0.88119 0.90315 0.92081 0.87352 0.90974 0.87772 0.98242 0.91566 0.93814 0.97851 0.91085 0.89872 0.90929 0.92629 0.91423 0.93371 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.41 19.01 74.32 1.41 -1.99 16 2 C -0.21 -4.09 11.51 31.12 0.36 -3.73 16 3 C 0.16 2.53 5.77 84.50 0.49 3.02 16 4 N -0.55 -10.68 4.79 -907.45 -4.35 -15.03 16 5 C 0.06 1.02 5.42 86.33 0.47 1.49 16 6 C -0.09 -2.04 4.98 30.65 0.15 -1.89 16 7 C -0.10 -2.53 1.72 -11.46 -0.02 -2.55 16 8 C 0.51 17.42 6.79 87.66 0.59 18.01 16 9 O -0.59 -23.62 15.49 -3.04 -0.05 -23.66 16 10 N -0.60 -21.23 2.94 -817.14 -2.40 -23.63 16 11 C 0.10 3.24 6.25 86.56 0.54 3.78 16 12 C 0.17 7.65 5.49 86.56 0.48 8.13 16 13 N -0.61 -29.83 2.93 -697.35 -2.04 -31.88 16 14 C -0.27 -14.61 9.52 84.03 0.80 -13.81 16 15 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 16 C -0.04 -1.99 4.90 84.86 0.42 -1.58 16 17 N -0.93 -52.99 11.54 21.65 0.25 -52.74 16 18 Si 0.97 43.05 29.58 68.60 2.03 45.08 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.13 5.72 6.67 86.42 0.58 6.30 16 23 C 0.10 3.85 6.60 86.42 0.57 4.42 16 24 C -0.10 -2.61 5.18 30.65 0.16 -2.45 16 25 C 0.07 1.40 5.07 86.33 0.44 1.84 16 26 H 0.24 2.54 7.80 -4.41 -0.03 2.51 16 27 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 33 H 0.11 2.32 6.58 -2.39 -0.02 2.30 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.10 2.86 4.90 -2.38 -0.01 2.85 16 36 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.07 3.29 6.39 -2.39 -0.02 3.28 16 38 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.07 2.92 7.94 -2.39 -0.02 2.90 16 41 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 1.91 7.34 -2.38 -0.02 1.89 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.75 6.36 -2.39 -0.02 1.73 16 Total: -1.00 -67.55 361.23 1.82 -65.74 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.95 Total: 17.12 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 7.43 Total: 19.00 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -8.55 Total: -123.27 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -67.55 1.82 -65.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490688052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.672 kcal (2) G-P(sol) polarization free energy of solvation -67.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds