Wall clock time and date at job start Fri Apr 10 2020 17:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46981 * 276.93834 * 3 2 1 5 5 C 1.36940 * 119.99946 * 264.35351 * 4 3 2 6 6 H 1.07993 * 120.00270 * 196.60259 * 5 4 3 7 7 C 1.38814 * 119.99892 * 16.60554 * 5 4 3 8 8 N 1.31622 * 119.99941 * 22.37351 * 7 5 4 9 9 Si 1.86796 * 119.99904 * 202.37895 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99543 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99898 * 9 7 5 13 13 C 1.46492 * 119.99971 * 84.35693 * 4 3 2 14 14 C 1.50698 * 109.47403 * 269.99897 * 13 4 3 15 15 O 1.21289 * 119.99413 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00530 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.21440 * 120.00387 * 359.97438 * 18 17 16 20 20 C 1.41233 * 119.99840 * 179.97438 * 18 17 16 21 21 C 1.37185 * 125.48263 * 180.02562 * 20 18 17 22 22 C 1.37198 * 113.24575 * 180.02562 * 21 20 18 23 23 C 1.34018 * 115.14982 * 0.02562 * 22 21 20 24 24 S 1.70611 * 110.99808 * 359.72328 * 23 22 21 25 25 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.46781 * 156.93912 * 3 2 1 27 27 H 1.08994 * 109.47220 * 36.94099 * 3 2 1 28 28 H 0.97003 * 119.99609 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47595 * 149.99787 * 13 4 3 30 30 H 1.08998 * 109.47203 * 29.99865 * 13 4 3 31 31 H 0.97001 * 120.00142 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47187 * 300.00100 * 17 16 14 33 33 H 1.08997 * 109.47398 * 59.99882 * 17 16 14 34 34 H 1.08001 * 123.37932 * 359.95989 * 21 20 18 35 35 H 1.08001 * 122.42961 * 180.02562 * 22 21 20 36 36 H 1.08004 * 124.50350 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1660 1.3712 5 6 3.4721 0.9324 2.1159 6 1 4.0734 0.8176 3.0056 7 6 3.0416 2.1936 1.7273 8 7 1.9884 2.3182 0.9477 9 14 3.9568 3.7138 2.3107 10 1 5.3644 3.6548 1.8412 11 1 3.3022 4.9276 1.7598 12 1 3.9319 3.7677 3.7946 13 6 3.2615 -1.5076 1.9454 14 6 1.9721 -1.8866 2.6271 15 8 1.0389 -1.1118 2.6330 16 7 1.8561 -3.0858 3.2310 17 6 0.6027 -3.4539 3.8941 18 6 0.7339 -4.8337 4.4859 19 8 1.7733 -5.4500 4.3650 20 6 -0.3520 -5.4100 5.1811 21 6 -0.3560 -6.6526 5.7625 22 6 -1.5455 -6.9611 6.3726 23 6 -2.4874 -6.0107 6.2976 24 16 -1.9146 -4.6481 5.4456 25 1 -1.0500 0.0002 0.0001 26 1 3.0089 0.9463 -0.4025 27 1 3.0097 -0.8205 -0.6176 28 1 1.6873 3.1995 0.6765 29 1 4.0732 -1.5162 2.6729 30 1 3.4772 -2.2235 1.1522 31 1 2.6028 -3.7050 3.2272 32 1 0.3873 -2.7378 4.6871 33 1 -0.2092 -3.4457 3.1669 34 1 0.4918 -7.3213 5.7411 35 1 -1.7108 -7.9017 6.8769 36 1 -3.4760 -6.0942 6.7244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491759468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:49 Heat of formation + Delta-G solvation = 62.461364 kcal Electronic energy + Delta-G solvation = -21790.472044 eV Core-core repulsion = 18370.147764 eV Total energy + Delta-G solvation = -3420.324281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12555 -38.57306 -37.59903 -35.61574 -33.74752 -31.40934 -31.27015 -30.88748 -28.47515 -26.67150 -25.81621 -24.79564 -22.07979 -21.11739 -19.85894 -19.47454 -17.83707 -17.36869 -16.55313 -16.40679 -16.13763 -15.69246 -15.33160 -14.76681 -14.54228 -14.29463 -13.92212 -13.52496 -13.33871 -13.14172 -12.97833 -12.93215 -12.52049 -12.28507 -12.17673 -11.37730 -11.21902 -11.21222 -10.83491 -10.65770 -10.24534 -10.13251 -9.94786 -9.25568 -9.10349 -8.96258 -8.71438 -8.62240 -8.47107 -8.23738 -6.96501 -5.70527 -3.12605 -0.04527 1.16610 1.56807 1.84969 2.64127 3.41108 3.47311 3.48821 3.54638 3.63170 4.07537 4.37885 4.58236 4.58571 4.69556 4.92628 4.99465 5.09599 5.39919 5.43516 5.46872 5.57759 5.68659 5.82452 5.90901 5.97027 6.04082 6.17759 6.32698 6.77088 6.90364 7.24233 7.29581 7.59493 7.78928 8.12789 8.34082 9.11196 9.19652 9.47616 9.80435 10.24593 11.31842 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.003098 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.818635 B = 9036.226092 C = 9131.714392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.094 4.094 3 C 0.269 3.731 4 N -0.558 5.558 5 C -0.268 4.268 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.130 3.870 14 C 0.467 3.533 15 O -0.495 6.495 16 N -0.743 5.743 17 C 0.074 3.926 18 C 0.421 3.579 19 O -0.449 6.449 20 C -0.308 4.308 21 C -0.043 4.043 22 C -0.160 4.160 23 C -0.228 4.228 24 S 0.245 5.755 25 H 0.184 0.816 26 H 0.098 0.902 27 H 0.036 0.964 28 H 0.254 0.746 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -18.074 8.020 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.144 3.856 4 N -0.275 5.275 5 C -0.397 4.397 6 H 0.093 0.907 7 C -0.192 4.192 8 N -0.518 5.518 9 Si 0.732 3.268 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.002 4.002 14 C 0.250 3.750 15 O -0.365 6.365 16 N -0.404 5.404 17 C -0.052 4.052 18 C 0.299 3.701 19 O -0.326 6.326 20 C -0.426 4.426 21 C -0.077 4.077 22 C -0.191 4.191 23 C -0.366 4.366 24 S 0.514 5.486 25 H 0.201 0.799 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.275 -16.139 7.460 19.211 hybrid contribution 0.407 -0.885 1.200 1.545 sum -6.868 -17.024 8.660 20.297 Atomic orbital electron populations 1.23938 0.95110 1.07385 1.04467 1.23936 0.95009 0.94399 0.96331 1.17893 0.83248 0.99645 0.84836 1.44237 1.72740 1.00246 1.10246 1.19142 1.26417 0.84431 1.09682 0.90683 1.24949 0.96103 0.98009 1.00127 1.70189 1.20968 1.22274 1.38381 0.86381 0.79558 0.82610 0.78267 1.20930 1.21747 1.21066 1.21073 0.92886 0.89339 0.96921 1.23556 0.93340 0.79635 0.78430 1.90759 1.40071 1.49104 1.56601 1.46392 1.14802 1.20174 1.59005 1.21429 0.91221 0.93662 0.98924 1.20250 0.85420 0.88198 0.76218 1.90566 1.28932 1.62499 1.50651 1.24105 1.01802 1.01947 1.14765 1.21025 0.98605 0.94457 0.93631 1.20060 0.92976 1.01613 1.04444 1.25630 1.05130 0.99685 1.06179 1.83468 1.03513 1.15026 1.46632 0.79909 0.88420 0.94657 0.93578 0.90295 0.91141 0.76397 0.88718 0.88716 0.82889 0.83730 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.27 18.79 29.55 0.56 -6.71 16 2 C -0.09 -2.44 10.03 -37.12 -0.37 -2.81 16 3 C 0.27 6.55 5.45 -6.83 -0.04 6.51 16 4 N -0.56 -13.83 2.09 -177.96 -0.37 -14.20 16 5 C -0.27 -7.31 9.66 -15.06 -0.15 -7.46 16 6 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 7 C 0.01 0.24 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -25.69 9.49 55.49 0.53 -25.17 16 9 Si 0.90 21.82 29.61 -169.99 -5.03 16.79 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.13 2.61 6.18 -5.20 -0.03 2.57 16 14 C 0.47 9.73 7.81 -10.99 -0.09 9.65 16 15 O -0.49 -12.73 14.44 5.55 0.08 -12.65 16 16 N -0.74 -12.25 5.53 -61.47 -0.34 -12.59 16 17 C 0.07 1.07 5.45 -5.19 -0.03 1.04 16 18 C 0.42 5.45 7.00 -33.17 -0.23 5.22 16 19 O -0.45 -6.62 16.04 5.42 0.09 -6.53 16 20 C -0.31 -3.32 6.23 -38.83 -0.24 -3.57 16 21 C -0.04 -0.40 9.95 -40.34 -0.40 -0.81 16 22 C -0.16 -1.19 10.14 -41.44 -0.42 -1.61 16 23 C -0.23 -1.60 10.93 29.25 0.32 -1.28 16 24 S 0.25 2.14 22.42 -107.50 -2.41 -0.27 16 25 H 0.18 4.00 7.80 -54.09 -0.42 3.58 16 26 H 0.10 2.55 6.41 -51.93 -0.33 2.22 16 27 H 0.04 0.74 7.97 -51.93 -0.41 0.32 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.08 1.44 8.02 -51.93 -0.42 1.03 16 30 H 0.07 1.20 7.95 -51.93 -0.41 0.79 16 31 H 0.40 5.83 7.44 -40.82 -0.30 5.53 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.15 1.31 8.02 -52.49 -0.42 0.89 16 35 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -35.12 335.64 -7.57 -42.69 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.96 Total: 5.97 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.21 Total: 0.90 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.18 Total: -51.96 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.41 Total: -0.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.12 -7.57 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491759468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.151 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds