Wall clock time and date at job start Fri Apr 10 2020 17:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46981 * 276.93834 * 3 2 1 5 5 C 1.36940 * 119.99946 * 264.35351 * 4 3 2 6 6 H 1.07993 * 120.00270 * 196.60259 * 5 4 3 7 7 C 1.38814 * 119.99892 * 16.60554 * 5 4 3 8 8 N 1.31622 * 119.99941 * 22.37351 * 7 5 4 9 9 Si 1.86796 * 119.99904 * 202.37895 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99543 * 9 7 5 11 11 H 1.48500 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47101 * 299.99898 * 9 7 5 13 13 C 1.46492 * 119.99971 * 84.35693 * 4 3 2 14 14 C 1.50698 * 109.47403 * 269.99897 * 13 4 3 15 15 O 1.21289 * 119.99413 * 359.97438 * 14 13 4 16 16 N 1.34771 * 120.00530 * 180.02562 * 14 13 4 17 17 C 1.46499 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46939 * 180.02562 * 17 16 14 19 19 O 1.21440 * 120.00387 * 359.97438 * 18 17 16 20 20 C 1.41233 * 119.99840 * 179.97438 * 18 17 16 21 21 C 1.37185 * 125.48263 * 180.02562 * 20 18 17 22 22 C 1.37198 * 113.24575 * 180.02562 * 21 20 18 23 23 C 1.34018 * 115.14982 * 0.02562 * 22 21 20 24 24 S 1.70611 * 110.99808 * 359.72328 * 23 22 21 25 25 H 4.40643 * 5.51471 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.46781 * 156.93912 * 3 2 1 27 27 H 1.08994 * 109.47220 * 36.94099 * 3 2 1 28 28 H 0.97003 * 119.99609 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47595 * 149.99787 * 13 4 3 30 30 H 1.08998 * 109.47203 * 29.99865 * 13 4 3 31 31 H 0.97001 * 120.00142 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47187 * 300.00100 * 17 16 14 33 33 H 1.08997 * 109.47398 * 59.99882 * 17 16 14 34 34 H 1.08001 * 123.37932 * 359.95989 * 21 20 18 35 35 H 1.08001 * 122.42961 * 180.02562 * 22 21 20 36 36 H 1.08004 * 124.50350 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1660 1.3712 5 6 3.4721 0.9324 2.1159 6 1 4.0734 0.8176 3.0056 7 6 3.0416 2.1936 1.7273 8 7 1.9884 2.3182 0.9477 9 14 3.9568 3.7138 2.3107 10 1 5.3644 3.6548 1.8412 11 1 3.3022 4.9276 1.7598 12 1 3.9319 3.7677 3.7946 13 6 3.2615 -1.5076 1.9454 14 6 1.9721 -1.8866 2.6271 15 8 1.0389 -1.1118 2.6330 16 7 1.8561 -3.0858 3.2310 17 6 0.6027 -3.4539 3.8941 18 6 0.7339 -4.8337 4.4859 19 8 1.7733 -5.4500 4.3650 20 6 -0.3520 -5.4100 5.1811 21 6 -0.3560 -6.6526 5.7625 22 6 -1.5455 -6.9611 6.3726 23 6 -2.4874 -6.0107 6.2976 24 16 -1.9146 -4.6481 5.4456 25 1 -1.0500 0.0002 0.0001 26 1 3.0089 0.9463 -0.4025 27 1 3.0097 -0.8205 -0.6176 28 1 1.6873 3.1995 0.6765 29 1 4.0732 -1.5162 2.6729 30 1 3.4772 -2.2235 1.1522 31 1 2.6028 -3.7050 3.2272 32 1 0.3873 -2.7378 4.6871 33 1 -0.2092 -3.4457 3.1669 34 1 0.4918 -7.3213 5.7411 35 1 -1.7108 -7.9017 6.8769 36 1 -3.4760 -6.0942 6.7244 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491759468.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:49 Heat of formation + Delta-G solvation = 39.522153 kcal Electronic energy + Delta-G solvation = -21791.466763 eV Core-core repulsion = 18370.147764 eV Total energy + Delta-G solvation = -3421.318999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22197 -40.07348 -38.38013 -37.45323 -35.24969 -33.41813 -33.05928 -31.90487 -29.80185 -28.15582 -27.69047 -25.72541 -23.78772 -22.14805 -21.34129 -20.22968 -19.37151 -18.88683 -18.26678 -17.73896 -17.22820 -16.87995 -16.84633 -16.35327 -15.85664 -15.58705 -15.36276 -15.02856 -14.91261 -14.54507 -14.00799 -13.90629 -13.74209 -13.57463 -13.29048 -13.18453 -13.11119 -12.64738 -12.43903 -12.24040 -11.93189 -11.87239 -11.18265 -10.94398 -10.64367 -10.53343 -10.18870 -10.05153 -9.93175 -9.60817 -8.92891 -7.77934 -5.20904 -0.80225 0.47448 0.92474 1.07629 1.50327 1.52041 1.58979 1.84624 2.00234 2.20454 2.45649 2.61290 2.71509 2.97625 3.34979 3.84174 3.99224 4.14110 4.18939 4.22898 4.23773 4.29505 4.44542 4.52101 4.64972 4.76690 4.95491 4.97787 5.17424 5.31497 5.33846 5.52187 5.65984 5.73823 6.22929 6.27633 6.72318 7.11320 7.52696 7.56713 7.85242 8.24179 9.22739 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.003098 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.818635 B = 9036.226092 C = 9131.714392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.115 4.115 3 C 0.267 3.733 4 N -0.572 5.572 5 C -0.272 4.272 6 H 0.078 0.922 7 C -0.045 4.045 8 N -0.907 5.907 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.285 1.285 13 C 0.124 3.876 14 C 0.469 3.531 15 O -0.549 6.549 16 N -0.728 5.728 17 C 0.072 3.928 18 C 0.432 3.568 19 O -0.475 6.475 20 C -0.344 4.344 21 C -0.034 4.034 22 C -0.167 4.167 23 C -0.206 4.206 24 S 0.236 5.764 25 H 0.205 0.795 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.244 0.756 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.412 0.588 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -20.136 9.336 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.117 4.117 3 C 0.142 3.858 4 N -0.290 5.290 5 C -0.401 4.401 6 H 0.095 0.905 7 C -0.242 4.242 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.227 1.227 12 H -0.211 1.211 13 C -0.007 4.007 14 C 0.254 3.746 15 O -0.424 6.424 16 N -0.387 5.387 17 C -0.053 4.053 18 C 0.313 3.687 19 O -0.355 6.355 20 C -0.462 4.462 21 C -0.069 4.069 22 C -0.197 4.197 23 C -0.344 4.344 24 S 0.504 5.496 25 H 0.222 0.778 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.191 0.809 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.470 -18.273 8.804 21.615 hybrid contribution 0.400 -0.433 0.891 1.068 sum -7.070 -18.707 9.695 22.224 Atomic orbital electron populations 1.24626 0.96143 1.07156 1.04261 1.24497 0.95964 0.94665 0.96611 1.17943 0.82620 0.99860 0.85389 1.44318 1.72880 1.01313 1.10467 1.19459 1.25700 0.85562 1.09420 0.90459 1.25649 0.96943 1.00565 1.01056 1.70370 1.22549 1.21856 1.40326 0.85399 0.78739 0.79069 0.77452 1.19678 1.22692 1.21108 1.21317 0.92854 0.88008 0.98512 1.23417 0.92812 0.80109 0.78252 1.90746 1.41756 1.50996 1.58942 1.46060 1.15953 1.19016 1.57630 1.21518 0.90025 0.95038 0.98765 1.20048 0.85808 0.87047 0.75778 1.90552 1.29950 1.62801 1.52177 1.23921 1.02215 1.03201 1.16898 1.21294 0.99510 0.93667 0.92397 1.20335 0.92068 1.02880 1.04387 1.26050 1.06178 0.98113 1.04047 1.83556 1.02694 1.16092 1.47246 0.77777 0.90823 0.91014 0.94666 0.88318 0.87605 0.75033 0.89046 0.88799 0.82490 0.80894 0.78133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -15.33 18.79 74.32 1.40 -13.94 16 2 C -0.11 -6.00 10.03 31.13 0.31 -5.68 16 3 C 0.27 13.00 5.45 84.57 0.46 13.46 16 4 N -0.57 -28.10 2.09 -716.94 -1.50 -29.60 16 5 C -0.27 -14.82 9.66 84.03 0.81 -14.01 16 6 H 0.08 4.08 7.90 -2.91 -0.02 4.05 16 7 C -0.05 -2.55 4.85 84.86 0.41 -2.14 16 8 N -0.91 -54.38 9.49 21.65 0.21 -54.18 16 9 Si 0.96 45.53 29.61 68.60 2.03 47.56 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C 0.12 4.77 6.18 85.63 0.53 5.30 16 14 C 0.47 19.32 7.81 87.66 0.68 20.00 16 15 O -0.55 -28.55 14.44 -3.06 -0.04 -28.60 16 16 N -0.73 -23.44 5.53 -466.79 -2.58 -26.02 16 17 C 0.07 2.09 5.45 85.63 0.47 2.55 16 18 C 0.43 11.00 7.00 26.42 0.19 11.18 16 19 O -0.48 -13.71 16.04 -3.53 -0.06 -13.77 16 20 C -0.34 -7.08 6.23 22.76 0.14 -6.94 16 21 C -0.03 -0.56 9.95 21.78 0.22 -0.35 16 22 C -0.17 -1.93 10.14 21.06 0.21 -1.72 16 23 C -0.21 -2.22 10.93 66.86 0.73 -1.49 16 24 S 0.24 3.78 22.42 -56.49 -1.27 2.52 16 25 H 0.21 8.96 7.80 -4.42 -0.03 8.92 16 26 H 0.07 3.93 6.41 -2.39 -0.02 3.91 16 27 H 0.07 2.89 7.97 -2.39 -0.02 2.87 16 28 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.10 3.40 8.02 -2.39 -0.02 3.38 16 30 H 0.11 3.31 7.95 -2.39 -0.02 3.30 16 31 H 0.41 11.48 7.44 -92.71 -0.69 10.79 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.16 2.42 8.02 -2.91 -0.02 2.40 16 35 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -76.73 335.64 3.77 -72.96 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.42 Total: 22.89 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 6.56 Total: 6.24 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.87 Total: -109.80 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.10 Total: -42.36 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.27 Total: 2.52 kcal Total: -76.73 3.77 -72.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491759468.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.483 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds