Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48496 * 109.47226 * 270.00017 * 3 2 1 5 5 H 1.48503 * 109.46991 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.47366 * 149.99601 * 3 2 1 7 7 C 1.38722 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99535 * 0.02562 * 7 2 1 9 9 O 1.34775 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00328 * 185.06096 * 9 7 2 11 11 C 1.39186 * 119.89530 * 354.44459 * 10 9 7 12 12 C 1.37594 * 120.10273 * 179.74679 * 11 10 9 13 13 C 1.40026 * 119.89669 * 0.25351 * 12 11 10 14 14 C 1.46960 * 120.10276 * 180.02562 * 13 12 11 15 15 C 1.35019 * 119.99964 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99951 * 180.02562 * 15 14 13 17 17 O 1.21723 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00203 * 179.97438 * 16 15 14 19 19 O 1.41604 * 119.99906 * 179.97438 * 18 16 15 20 20 C 1.42907 * 113.99733 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47043 * 180.02562 * 20 19 18 22 22 N 1.34776 * 120.00220 * 180.02562 * 21 20 19 23 23 O 1.21289 * 119.99909 * 0.02562 * 21 20 19 24 24 C 1.40025 * 119.79857 * 359.97438 * 13 12 11 25 25 C 1.37597 * 119.89768 * 0.02562 * 24 13 12 26 26 H 0.97001 * 119.99729 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.94523 * 0.02562 * 11 10 9 28 28 H 1.07997 * 120.05578 * 180.26865 * 12 11 10 29 29 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 30 30 H 1.07994 * 120.00582 * 359.97438 * 15 14 13 31 31 H 0.97000 * 120.00437 * 359.97438 * 18 16 15 32 32 H 1.08995 * 109.47161 * 300.00626 * 20 19 18 33 33 H 1.09003 * 109.46890 * 60.00472 * 20 19 18 34 34 H 0.97001 * 119.99773 * 359.97438 * 22 21 20 35 35 H 0.97003 * 120.00184 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.05154 * 179.97438 * 24 13 12 37 37 H 1.08004 * 119.94803 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4685 -2.1367 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4047 -0.1050 11 6 3.2167 -3.5738 -0.0913 12 6 3.8366 -4.7971 -0.2039 13 6 5.2297 -4.8649 -0.3270 14 6 5.8964 -6.1690 -0.4481 15 6 7.2399 -6.2319 -0.5663 16 6 7.9034 -7.5298 -0.6874 17 8 7.2442 -8.5531 -0.6812 18 7 9.2444 -7.5927 -0.8058 19 8 9.8867 -8.8493 -0.9225 20 6 11.3084 -8.7665 -1.0413 21 6 11.8842 -10.1541 -1.1593 22 7 13.2157 -10.3230 -1.2821 23 8 11.1494 -11.1189 -1.1436 24 6 5.9857 -3.6863 -0.3355 25 6 5.3572 -2.4675 -0.2224 26 1 -0.4850 0.8401 0.0004 27 1 2.1422 -3.5205 0.0033 28 1 3.2495 -5.7036 -0.1975 29 1 5.3117 -7.0770 -0.4418 30 1 7.8247 -5.3241 -0.5722 31 1 9.7696 -6.7772 -0.8111 32 1 11.5657 -8.1899 -1.9297 33 1 11.7188 -8.2763 -0.1585 34 1 13.8033 -9.5513 -1.2950 35 1 13.5863 -11.2162 -1.3584 36 1 7.0606 -3.7338 -0.4299 37 1 5.9396 -1.5579 -0.2285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492344297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = -46.319115 kcal Electronic energy + Delta-G solvation = -22520.826011 eV Core-core repulsion = 18653.031783 eV Total energy + Delta-G solvation = -3867.794227 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10643 -39.53098 -39.21094 -37.35169 -36.92147 -34.29020 -33.34452 -32.61971 -32.28464 -30.56555 -28.75157 -27.87075 -25.66422 -23.39172 -22.33906 -21.64626 -20.97383 -19.56110 -18.61746 -18.13056 -17.92732 -17.44760 -17.14618 -16.64750 -16.64614 -15.23612 -15.05335 -14.92928 -14.59793 -14.36578 -14.10395 -14.01122 -13.92892 -13.80254 -13.15743 -12.88247 -12.67139 -12.43822 -11.95772 -11.87279 -11.60039 -11.24978 -11.04939 -10.80697 -10.59236 -10.30517 -10.30479 -9.94623 -9.72079 -9.58190 -9.13951 -8.95084 -8.50538 -7.29554 -6.63277 -4.26885 0.91339 1.44040 2.00470 2.02044 2.42671 3.01729 3.09679 3.13592 3.26444 3.45166 4.06124 4.10578 4.33197 4.38975 4.42026 4.47932 4.59094 4.78007 4.91110 5.09866 5.38771 5.43800 5.55015 5.90261 5.96360 6.15137 6.25259 6.28831 6.45665 6.48374 6.63041 6.67789 6.87868 7.04979 7.10069 7.23832 7.38207 7.59796 7.65564 7.80921 8.25724 8.69728 9.29536 10.42811 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.047628 B = 0.001873 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.751941 B =14943.111477 C =15509.739397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.201 6.201 10 C 0.174 3.826 11 C -0.230 4.230 12 C -0.034 4.034 13 C -0.193 4.193 14 C 0.047 3.953 15 C -0.273 4.273 16 C 0.568 3.432 17 O -0.531 6.531 18 N -0.602 5.602 19 O -0.119 6.119 20 C 0.010 3.990 21 C 0.525 3.475 22 N -0.850 5.850 23 O -0.513 6.513 24 C -0.044 4.044 25 C -0.200 4.200 26 H 0.284 0.716 27 H 0.138 0.862 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.409 0.591 36 H 0.120 0.880 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.792 -9.458 -1.975 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.129 0.871 9 O -0.103 6.103 10 C 0.120 3.880 11 C -0.249 4.249 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.027 3.973 15 C -0.294 4.294 16 C 0.361 3.639 17 O -0.407 6.407 18 N -0.305 5.305 19 O -0.122 6.122 20 C -0.071 4.071 21 C 0.306 3.694 22 N -0.417 5.417 23 O -0.387 6.387 24 C -0.062 4.062 25 C -0.219 4.219 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.247 0.753 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.241 0.759 36 H 0.138 0.862 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 23.376 -10.497 -1.910 25.696 hybrid contribution 1.296 1.205 -0.086 1.772 sum 24.672 -9.292 -1.996 26.439 Atomic orbital electron populations 1.69615 1.05718 1.29041 1.45659 1.24548 0.95087 0.99122 0.95170 0.86152 0.80373 0.81073 0.79197 1.19626 1.20493 1.18193 1.20893 0.76609 0.96968 1.52222 0.87130 1.83499 1.23003 1.26248 1.77575 1.19379 0.91774 0.85342 0.91551 1.21229 1.01432 0.91657 1.10613 1.21057 0.93026 0.97149 0.93963 1.18474 0.93424 0.91798 1.15664 1.22318 0.93604 0.96645 0.84686 1.22070 0.95667 0.94230 1.17445 1.18498 0.78865 0.90612 0.75942 1.90847 1.63599 1.36283 1.50000 1.47593 1.05465 0.98363 1.79095 1.90764 1.16102 1.08929 1.96448 1.22634 0.84187 0.96556 1.03723 1.19870 0.82836 0.90259 0.76389 1.43629 1.06958 1.13058 1.78080 1.90871 1.58825 1.41683 1.47271 1.20877 0.98505 0.91045 0.95751 1.20138 0.91796 0.98042 1.11955 0.90605 0.84446 0.86383 0.85440 0.85363 0.75338 0.88857 0.88853 0.76837 0.75858 0.86179 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.58 13.96 55.48 0.77 -22.81 16 2 C 0.07 1.75 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 20.24 28.62 -169.99 -4.86 15.38 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.33 9.94 30.91 0.31 -10.03 16 8 H 0.11 2.97 5.41 -52.48 -0.28 2.69 16 9 O -0.20 -4.90 8.57 0.76 0.01 -4.90 16 10 C 0.17 3.69 6.66 -38.88 -0.26 3.43 16 11 C -0.23 -4.58 9.14 -39.46 -0.36 -4.94 16 12 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 13 C -0.19 -3.00 5.87 -105.03 -0.62 -3.62 16 14 C 0.05 0.66 9.45 -37.19 -0.35 0.31 16 15 C -0.27 -3.34 9.41 -37.50 -0.35 -3.70 16 16 C 0.57 8.14 7.88 -13.04 -0.10 8.04 16 17 O -0.53 -10.21 16.64 -12.96 -0.22 -10.42 16 18 N -0.60 -6.47 6.39 30.16 0.19 -6.27 16 19 O -0.12 -1.51 10.64 -40.34 -0.43 -1.94 16 20 C 0.01 0.06 6.71 36.00 0.24 0.31 16 21 C 0.52 4.31 8.18 -10.99 -0.09 4.22 16 22 N -0.85 -2.58 8.87 31.22 0.28 -2.30 16 23 O -0.51 -7.39 17.34 -14.36 -0.25 -7.64 16 24 C -0.04 -0.65 9.40 -39.15 -0.37 -1.02 16 25 C -0.20 -3.54 9.97 -39.47 -0.39 -3.93 16 26 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.14 2.87 5.62 -52.49 -0.29 2.57 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.13 1.82 7.52 -52.48 -0.39 1.43 16 30 H 0.13 1.18 6.06 -52.49 -0.32 0.87 16 31 H 0.41 2.40 8.52 -40.82 -0.35 2.05 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.40 -0.27 8.83 -40.82 -0.36 -0.63 16 35 H 0.41 1.01 8.93 -40.82 -0.36 0.65 16 36 H 0.12 1.37 6.16 -52.49 -0.32 1.04 16 37 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -36.80 338.00 -5.75 -42.55 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.51 Total: 3.48 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.83 Total: -10.23 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 1.24 Total: -31.38 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.89 Total: -24.90 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.86 Total: 15.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.80 -5.75 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492344297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.767 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds