Wall clock time and date at job start Fri Apr 10 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48496 * 109.47226 * 270.00017 * 3 2 1 5 5 H 1.48503 * 109.46991 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.47366 * 149.99601 * 3 2 1 7 7 C 1.38722 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99535 * 0.02562 * 7 2 1 9 9 O 1.34775 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00328 * 185.06096 * 9 7 2 11 11 C 1.39186 * 119.89530 * 354.44459 * 10 9 7 12 12 C 1.37594 * 120.10273 * 179.74679 * 11 10 9 13 13 C 1.40026 * 119.89669 * 0.25351 * 12 11 10 14 14 C 1.46960 * 120.10276 * 180.02562 * 13 12 11 15 15 C 1.35019 * 119.99964 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99951 * 180.02562 * 15 14 13 17 17 O 1.21723 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00203 * 179.97438 * 16 15 14 19 19 O 1.41604 * 119.99906 * 179.97438 * 18 16 15 20 20 C 1.42907 * 113.99733 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47043 * 180.02562 * 20 19 18 22 22 N 1.34776 * 120.00220 * 180.02562 * 21 20 19 23 23 O 1.21289 * 119.99909 * 0.02562 * 21 20 19 24 24 C 1.40025 * 119.79857 * 359.97438 * 13 12 11 25 25 C 1.37597 * 119.89768 * 0.02562 * 24 13 12 26 26 H 0.97001 * 119.99729 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.94523 * 0.02562 * 11 10 9 28 28 H 1.07997 * 120.05578 * 180.26865 * 12 11 10 29 29 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 30 30 H 1.07994 * 120.00582 * 359.97438 * 15 14 13 31 31 H 0.97000 * 120.00437 * 359.97438 * 18 16 15 32 32 H 1.08995 * 109.47161 * 300.00626 * 20 19 18 33 33 H 1.09003 * 109.46890 * 60.00472 * 20 19 18 34 34 H 0.97001 * 119.99773 * 359.97438 * 22 21 20 35 35 H 0.97003 * 120.00184 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.05154 * 179.97438 * 24 13 12 37 37 H 1.08004 * 119.94803 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4685 -2.1367 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4047 -0.1050 11 6 3.2167 -3.5738 -0.0913 12 6 3.8366 -4.7971 -0.2039 13 6 5.2297 -4.8649 -0.3270 14 6 5.8964 -6.1690 -0.4481 15 6 7.2399 -6.2319 -0.5663 16 6 7.9034 -7.5298 -0.6874 17 8 7.2442 -8.5531 -0.6812 18 7 9.2444 -7.5927 -0.8058 19 8 9.8867 -8.8493 -0.9225 20 6 11.3084 -8.7665 -1.0413 21 6 11.8842 -10.1541 -1.1593 22 7 13.2157 -10.3230 -1.2821 23 8 11.1494 -11.1189 -1.1436 24 6 5.9857 -3.6863 -0.3355 25 6 5.3572 -2.4675 -0.2224 26 1 -0.4850 0.8401 0.0004 27 1 2.1422 -3.5205 0.0033 28 1 3.2495 -5.7036 -0.1975 29 1 5.3117 -7.0770 -0.4418 30 1 7.8247 -5.3241 -0.5722 31 1 9.7696 -6.7772 -0.8111 32 1 11.5657 -8.1899 -1.9297 33 1 11.7188 -8.2763 -0.1585 34 1 13.8033 -9.5513 -1.2950 35 1 13.5863 -11.2162 -1.3584 36 1 7.0606 -3.7338 -0.4299 37 1 5.9396 -1.5579 -0.2285 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492344297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:53 Heat of formation + Delta-G solvation = -75.629219 kcal Electronic energy + Delta-G solvation = -22522.096992 eV Core-core repulsion = 18653.031783 eV Total energy + Delta-G solvation = -3869.065209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99668 -40.79926 -40.34829 -38.63590 -38.01608 -34.83300 -34.77961 -34.25473 -33.34642 -31.97421 -29.91189 -28.68566 -27.38776 -24.67256 -23.76907 -22.45305 -22.02032 -20.73616 -19.84263 -19.29376 -18.98362 -18.67254 -18.07043 -17.37492 -17.26293 -16.68375 -16.42307 -15.90934 -15.81336 -15.71628 -15.62220 -15.23366 -15.09562 -14.78612 -14.38504 -14.24089 -14.07096 -13.85744 -13.37890 -13.19391 -12.71730 -12.63301 -12.34918 -12.28590 -11.92558 -11.40058 -11.28468 -11.15865 -11.05368 -10.78630 -10.67966 -10.03479 -9.88566 -8.73856 -8.52277 -6.24187 -0.29982 0.58606 0.64254 1.09626 1.34183 1.38883 1.44767 1.53943 2.27589 2.30247 2.53346 2.81626 3.02500 3.17438 3.48359 3.64489 3.93640 3.97978 4.07516 4.10167 4.14714 4.25730 4.33941 4.48359 4.64025 4.86770 5.10716 5.21536 5.29247 5.38599 5.57080 5.60164 5.72157 5.80059 5.81893 5.85685 6.16732 6.31486 6.40639 6.80854 7.23681 7.27660 7.52077 8.58537 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.047628 B = 0.001873 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.751941 B =14943.111477 C =15509.739397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.404 4.404 8 H 0.083 0.917 9 O -0.232 6.232 10 C 0.137 3.863 11 C -0.246 4.246 12 C -0.045 4.045 13 C -0.161 4.161 14 C 0.020 3.980 15 C -0.224 4.224 16 C 0.560 3.440 17 O -0.588 6.588 18 N -0.576 5.576 19 O -0.165 6.165 20 C 0.005 3.995 21 C 0.519 3.481 22 N -0.821 5.821 23 O -0.590 6.590 24 C -0.035 4.035 25 C -0.193 4.193 26 H 0.286 0.714 27 H 0.111 0.889 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.175 0.825 31 H 0.433 0.567 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.425 0.575 35 H 0.414 0.586 36 H 0.175 0.825 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.548 -9.318 -2.392 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.480 4.480 8 H 0.100 0.900 9 O -0.138 6.138 10 C 0.086 3.914 11 C -0.265 4.265 12 C -0.063 4.063 13 C -0.161 4.161 14 C 0.000 4.000 15 C -0.245 4.245 16 C 0.352 3.648 17 O -0.469 6.469 18 N -0.280 5.280 19 O -0.170 6.170 20 C -0.074 4.074 21 C 0.302 3.698 22 N -0.389 5.389 23 O -0.469 6.469 24 C -0.052 4.052 25 C -0.212 4.212 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.154 0.846 29 H 0.138 0.862 30 H 0.192 0.808 31 H 0.278 0.722 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.257 0.743 35 H 0.247 0.753 36 H 0.192 0.808 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 29.304 -10.341 -2.338 31.163 hybrid contribution 0.091 0.609 -0.020 0.616 sum 29.394 -9.732 -2.358 31.053 Atomic orbital electron populations 1.69709 1.07110 1.29843 1.49076 1.25349 0.95877 1.02381 0.95178 0.85187 0.78944 0.77059 0.79378 1.18967 1.19433 1.18147 1.20753 0.77998 0.96262 1.52985 0.89955 1.83455 1.21356 1.27602 1.81433 1.19992 0.93522 0.84841 0.93040 1.21215 1.00509 0.93029 1.11723 1.21290 0.94404 0.96583 0.94065 1.18737 0.92713 0.93054 1.11630 1.22163 0.94590 0.95463 0.87773 1.22399 0.95070 0.94890 1.12102 1.18862 0.79893 0.90484 0.75563 1.90846 1.65253 1.38301 1.52458 1.47227 1.04885 0.99225 1.76668 1.90756 1.19684 1.09793 1.96724 1.23014 0.81178 0.95914 1.07340 1.20364 0.83746 0.90300 0.75356 1.43445 1.05591 1.14432 1.75388 1.90848 1.60828 1.43965 1.51289 1.21409 1.00989 0.89209 0.93610 1.20527 0.90125 1.00212 1.10363 0.90415 0.87102 0.84595 0.86249 0.80775 0.72222 0.84978 0.84958 0.74258 0.75330 0.80773 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.28 13.96 21.62 0.30 -52.98 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 0.97 43.15 28.62 68.60 1.96 45.11 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.40 -22.83 9.94 67.94 0.68 -22.16 16 8 H 0.08 4.91 5.41 -2.91 -0.02 4.89 16 9 O -0.23 -11.83 8.57 -20.20 -0.17 -12.00 16 10 C 0.14 5.88 6.66 22.72 0.15 6.03 16 11 C -0.25 -10.21 9.14 22.35 0.20 -10.00 16 12 C -0.05 -1.50 9.78 22.55 0.22 -1.28 16 13 C -0.16 -4.44 5.87 -20.13 -0.12 -4.56 16 14 C 0.02 0.49 9.45 23.82 0.23 0.71 16 15 C -0.22 -4.21 9.41 23.62 0.22 -3.98 16 16 C 0.56 13.87 7.88 86.33 0.68 14.55 16 17 O -0.59 -21.75 16.64 12.91 0.21 -21.53 16 18 N -0.58 -9.65 6.39 -176.69 -1.13 -10.78 16 19 O -0.17 -3.68 10.64 -11.20 -0.12 -3.80 16 20 C 0.01 0.04 6.71 71.23 0.48 0.52 16 21 C 0.52 7.33 8.18 87.66 0.72 8.05 16 22 N -0.82 -2.38 8.87 -173.53 -1.54 -3.92 16 23 O -0.59 -16.97 17.34 15.98 0.28 -16.69 16 24 C -0.03 -0.86 9.40 22.55 0.21 -0.65 16 25 C -0.19 -6.30 9.97 22.34 0.22 -6.08 16 26 H 0.29 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.11 5.14 5.62 -2.91 -0.02 5.12 16 28 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.12 3.18 7.52 -2.91 -0.02 3.16 16 30 H 0.18 1.65 6.06 -2.91 -0.02 1.63 16 31 H 0.43 2.23 8.52 -92.71 -0.79 1.44 16 32 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.42 -2.44 8.83 -92.71 -0.82 -3.26 16 35 H 0.41 1.04 8.93 -92.71 -0.83 0.22 16 36 H 0.18 2.45 6.16 -2.91 -0.02 2.43 16 37 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -90.77 338.00 2.89 -87.88 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -1.26 Total: 6.44 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.36 Total: -17.73 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -2.37 Total: -67.68 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: 0.20 Total: -54.02 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.96 Total: 45.11 kcal Total: -90.77 2.89 -87.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492344297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.251 kcal (2) G-P(sol) polarization free energy of solvation -90.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds