Wall clock time and date at job start Fri Apr 10 2020 17:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34736 * 117.00057 * 2 1 4 4 O 1.21477 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.47658 * 119.99934 * 179.97438 * 3 2 1 6 6 C 1.39445 * 120.75137 * 0.02562 * 5 3 2 7 7 N 1.34009 * 121.74451 * 180.02562 * 6 5 3 8 8 N 1.40096 * 118.68576 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00177 * 142.97246 * 8 7 6 10 10 O 1.22105 * 119.99897 * 4.76980 * 9 8 7 11 11 C 1.39049 * 120.00015 * 184.49643 * 9 8 7 12 12 H 1.08000 * 120.00223 * 353.87696 * 11 9 8 13 13 C 1.39458 * 120.00027 * 173.87464 * 11 9 8 14 14 N 1.31033 * 119.99709 * 6.38648 * 13 11 9 15 15 Si 1.86794 * 120.00001 * 186.38386 * 13 11 9 16 16 H 1.48493 * 109.47109 * 84.99195 * 15 13 11 17 17 H 1.48505 * 109.47159 * 204.99088 * 15 13 11 18 18 H 1.48497 * 109.47195 * 324.98859 * 15 13 11 19 19 C 1.34705 * 122.62210 * 0.24923 * 7 6 5 20 20 C 1.37220 * 120.19482 * 359.49565 * 19 7 6 21 21 C 1.46276 * 137.24819 * 180.14259 * 20 19 7 22 22 O 1.34822 * 127.09161 * 0.28946 * 21 20 19 23 23 N 1.34317 * 105.80745 * 180.31255 * 21 20 19 24 24 N 1.28326 * 112.64692 * 359.97438 * 23 21 20 25 25 C 1.33954 * 112.21525 * 0.02562 * 24 23 21 26 26 H 1.08998 * 109.46831 * 300.00025 * 1 2 3 27 27 H 1.09000 * 109.47255 * 59.99719 * 1 2 3 28 28 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.12998 * 0.04000 * 6 5 3 30 30 H 0.97001 * 119.99839 * 322.96548 * 8 7 6 31 31 H 0.97001 * 119.99699 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.90531 * 179.71848 * 19 7 6 33 33 H 0.96696 * 117.00233 * 90.00387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5383 1.2777 0.0006 6 6 4.3130 0.1183 0.0006 7 7 5.6523 0.1652 0.0016 8 7 6.3673 -1.0395 0.0021 9 6 7.5132 -1.1434 -0.6999 10 8 7.9738 -0.1639 -1.2650 11 6 8.1737 -2.3646 -0.7759 12 1 7.8245 -3.2046 -0.1937 13 6 9.2869 -2.5049 -1.6041 14 7 9.7863 -1.4578 -2.2133 15 14 10.0662 -4.1854 -1.8447 16 1 9.3500 -4.9133 -2.9227 17 1 11.4928 -4.0201 -2.2223 18 1 9.9753 -4.9588 -0.5802 19 6 6.3383 1.3245 0.0076 20 6 5.6691 2.5224 0.0026 21 6 6.0122 3.9444 0.0034 22 8 7.2483 4.4826 0.0049 23 7 4.8417 4.6032 0.0029 24 7 3.8302 3.8135 0.0013 25 6 4.1942 2.5243 0.0012 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.8207 -0.8429 -0.0005 30 1 6.0378 -1.7989 0.5078 31 1 10.5609 -1.5553 -2.7890 32 1 7.4182 1.3110 0.0128 33 1 7.6518 4.6582 -0.8561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524733095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:59 Heat of formation + Delta-G solvation = -36.763617 kcal Electronic energy + Delta-G solvation = -24403.263697 eV Core-core repulsion = 20432.343484 eV Total energy + Delta-G solvation = -3970.920213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.084 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.06181 -41.34204 -41.25410 -39.06740 -38.16001 -37.46288 -35.48840 -34.71298 -33.48811 -31.84975 -29.71249 -28.96712 -28.47998 -26.40766 -24.80803 -23.56256 -22.52273 -21.67833 -20.29871 -19.70631 -19.34215 -18.76291 -18.35666 -17.84487 -17.60744 -17.42534 -17.16344 -16.58825 -16.15203 -15.66057 -15.47782 -14.97899 -14.79474 -14.54712 -14.32499 -14.25892 -14.00316 -13.37506 -13.06391 -12.94578 -12.88111 -12.74258 -12.11768 -12.03583 -11.78702 -11.73473 -11.54175 -11.15085 -10.94341 -10.59725 -10.22221 -9.95938 -8.83874 -8.54956 -7.25572 -1.08886 -0.47711 0.14602 1.24010 1.41088 1.48359 1.50245 1.63048 1.70600 2.16863 2.21477 2.35543 2.55715 2.68064 2.91689 3.21769 3.39329 3.49036 3.75351 3.98113 4.12691 4.37965 4.40747 4.45797 4.57574 4.79763 4.93636 5.11483 5.14544 5.21455 5.29890 5.68502 5.86786 5.89083 6.59940 6.64879 6.81329 6.95164 7.81227 8.05366 8.34819 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.004464 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.020527 B = 6270.915344 C = 8060.998773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.527 3.473 4 O -0.512 6.512 5 C -0.123 4.123 6 C 0.163 3.837 7 N -0.195 5.195 8 N -0.552 5.552 9 C 0.528 3.472 10 O -0.611 6.611 11 C -0.525 4.525 12 H 0.114 0.886 13 C 0.039 3.961 14 N -0.785 5.785 15 Si 1.002 2.998 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.242 1.242 19 C 0.264 3.736 20 C -0.259 4.259 21 C 0.199 3.801 22 O -0.463 6.463 23 N -0.302 5.302 24 N -0.333 5.333 25 C 0.080 3.920 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.144 0.856 29 H 0.245 0.755 30 H 0.445 0.555 31 H 0.284 0.716 32 H 0.192 0.808 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -10.605 3.533 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.371 3.629 4 O -0.400 6.400 5 C -0.133 4.133 6 C 0.026 3.974 7 N 0.051 4.949 8 N -0.312 5.312 9 C 0.342 3.658 10 O -0.497 6.497 11 C -0.561 4.561 12 H 0.131 0.869 13 C -0.183 4.183 14 N -0.412 5.412 15 Si 0.822 3.178 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.165 1.165 19 C 0.120 3.880 20 C -0.273 4.273 21 C -0.002 4.002 22 O -0.270 6.270 23 N -0.147 5.147 24 N -0.176 5.176 25 C -0.068 4.068 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.261 0.739 30 H 0.292 0.708 31 H 0.095 0.905 32 H 0.208 0.792 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -8.500 -8.344 3.595 12.442 hybrid contribution 1.222 -1.096 -0.633 1.759 sum -7.278 -9.439 2.962 12.282 Atomic orbital electron populations 1.23649 0.73702 1.06265 1.02629 1.86480 1.25596 1.30191 1.84225 1.20275 0.87282 0.82230 0.73155 1.90912 1.66194 1.37197 1.45678 1.17866 0.90262 0.89448 1.15697 1.23219 0.79796 1.01897 0.92486 1.41706 1.04088 1.01920 1.47147 1.47202 1.24654 1.01328 1.57983 1.17187 0.78480 0.91174 0.78956 1.90804 1.67041 1.39530 1.52311 1.19709 1.12157 0.96823 1.27408 0.86854 1.26889 0.96007 1.02570 0.92824 1.70288 1.18046 1.33032 1.19808 0.84903 0.76910 0.75550 0.80458 1.18585 1.20546 1.16460 1.22199 0.99913 0.81765 0.84173 1.21445 0.95068 0.93957 1.16790 1.22066 0.86382 0.85200 1.06525 1.84054 1.23848 1.82487 1.36638 1.74438 0.95706 1.29174 1.15431 1.74554 1.21043 0.98394 1.23658 1.21649 0.90496 0.94303 1.00359 0.91878 0.92177 0.83794 0.73870 0.70822 0.90545 0.79155 0.72372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.35 -7.33 9.84 -56.46 -0.56 -7.89 16 3 C 0.53 16.14 7.91 70.31 0.56 16.70 16 4 O -0.51 -19.80 16.09 19.91 0.32 -19.48 16 5 C -0.12 -3.96 5.91 -19.86 -0.12 -4.07 16 6 C 0.16 3.91 10.24 84.65 0.87 4.78 16 7 N -0.20 -5.77 3.38 -192.20 -0.65 -6.42 16 8 N -0.55 -15.90 5.98 -181.51 -1.08 -16.98 16 9 C 0.53 21.71 7.34 84.44 0.62 22.33 16 10 O -0.61 -30.76 12.34 -5.66 -0.07 -30.83 16 11 C -0.53 -20.97 9.14 22.76 0.21 -20.77 16 12 H 0.11 3.65 7.85 -2.91 -0.02 3.62 16 13 C 0.04 1.63 5.47 85.11 0.47 2.09 16 14 N -0.78 -38.07 11.70 21.74 0.25 -37.81 16 15 Si 1.00 30.64 29.56 68.60 2.03 32.67 16 16 H -0.26 -7.76 7.11 99.48 0.71 -7.06 16 17 H -0.28 -8.76 7.11 99.48 0.71 -8.06 16 18 H -0.24 -6.63 7.11 99.48 0.71 -5.93 16 19 C 0.26 9.50 9.31 84.01 0.78 10.28 16 20 C -0.26 -10.40 6.67 -18.99 -0.13 -10.53 16 21 C 0.20 8.50 8.98 86.40 0.78 9.28 16 22 O -0.46 -16.67 13.49 -80.89 -1.09 -17.76 16 23 N -0.30 -14.43 12.18 -164.25 -2.00 -16.43 16 24 N -0.33 -16.10 11.76 -47.66 -0.56 -16.66 16 25 C 0.08 3.33 7.15 41.90 0.30 3.63 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.25 3.13 7.60 -2.91 -0.02 3.11 16 30 H 0.44 8.49 8.76 -213.32 -1.87 6.62 16 31 H 0.28 12.60 8.30 -92.71 -0.77 11.83 16 32 H 0.19 7.48 6.16 -2.91 -0.02 7.47 16 33 H 0.42 10.63 9.15 -74.06 -0.68 9.95 16 Total: -1.00 -78.60 308.55 0.80 -77.80 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -1.32 Total: 24.42 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 5.53 Total: 35.37 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -4.04 Total: -94.31 kcal Atomic # 8 Polarization: -74.56 SS G_CDS: -1.40 Total: -75.96 kcal Atomic # 14 Polarization: 30.64 SS G_CDS: 2.03 Total: 32.67 kcal Total: -78.60 0.80 -77.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524733095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.035 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds