Wall clock time and date at job start Fri Apr 10 2020 17:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50701 * 109.46970 * 85.00357 * 3 2 1 5 5 H 1.08005 * 119.99694 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00052 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00074 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00171 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47010 * 90.00165 * 8 6 4 10 10 H 1.48496 * 109.47338 * 210.00715 * 8 6 4 11 11 H 1.48504 * 109.46968 * 330.00328 * 8 6 4 12 12 S 1.65597 * 119.99926 * 180.27960 * 2 1 3 13 13 O 1.42095 * 106.40469 * 23.26116 * 12 2 1 14 14 O 1.42098 * 106.40441 * 156.18457 * 12 2 1 15 15 N 1.65602 * 107.21619 * 269.72326 * 12 2 1 16 16 C 1.46506 * 120.00056 * 64.99965 * 15 12 2 17 17 C 1.52998 * 109.47165 * 164.99874 * 16 15 12 18 18 H 1.09009 * 109.46996 * 54.99910 * 17 16 15 19 19 C 1.53000 * 109.47051 * 295.00507 * 17 16 15 20 20 C 1.53006 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47099 * 59.99906 * 20 19 17 22 22 C 1.52997 * 109.46942 * 299.99440 * 21 20 19 23 23 H 1.09001 * 109.47422 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.47347 * 300.00667 * 22 21 20 25 25 C 1.52990 * 109.47220 * 175.00152 * 17 16 15 26 26 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 27 27 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 28 28 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 29 29 H 1.08999 * 109.46864 * 204.99706 * 3 2 1 30 30 H 1.08999 * 109.46950 * 325.00088 * 3 2 1 31 31 H 0.97000 * 120.00214 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99945 * 245.00283 * 15 12 2 33 33 H 1.09000 * 109.47125 * 285.00032 * 16 15 12 34 34 H 1.09001 * 109.46698 * 45.00125 * 16 15 12 35 35 H 1.09006 * 109.47232 * 299.99592 * 19 17 16 36 36 H 1.08995 * 109.47494 * 59.99800 * 19 17 16 37 37 H 1.08996 * 109.46968 * 299.99010 * 20 19 17 38 38 H 1.09004 * 109.46712 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46975 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.47239 * 59.99945 * 21 20 19 41 41 H 1.00897 * 110.99585 * 299.99671 * 24 22 21 42 42 H 1.00891 * 111.00220 * 63.95239 * 24 22 21 43 43 H 1.09004 * 109.47189 * 299.99850 * 25 17 16 44 44 H 1.08996 * 109.47633 * 59.99898 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9283 1.1937 2.2332 6 6 2.9997 2.9508 1.6664 7 7 3.1258 3.3842 2.9017 8 14 3.7138 3.9403 0.2521 9 1 2.6949 4.8995 -0.2450 10 1 4.9080 4.6866 0.7233 11 1 4.1061 3.0213 -0.8465 12 16 2.2930 -1.4341 -0.0070 13 8 1.4091 -2.4051 -0.5501 14 8 3.5736 -1.1554 -0.5561 15 7 2.5446 -1.8625 1.5727 16 6 1.4047 -2.1837 2.4351 17 6 1.9029 -2.8939 3.6954 18 1 2.6582 -2.2788 4.1846 19 6 2.5139 -4.2434 3.3126 20 6 3.0115 -4.9538 4.5731 21 6 1.8381 -5.1780 5.5290 22 6 1.2272 -3.8286 5.9118 23 1 0.3915 -3.9882 6.5932 24 7 2.2449 -2.9998 6.5715 25 6 0.7300 -3.1181 4.6519 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 3.1858 1.1177 -0.4343 30 1 1.6501 2.0043 -0.5894 31 1 3.5893 4.2178 3.0783 32 1 3.4468 -1.9006 1.9271 33 1 0.8906 -1.2643 2.7153 34 1 0.7159 -2.8363 1.8987 35 1 1.7586 -4.8586 2.8234 36 1 3.3495 -4.0837 2.6312 37 1 3.7667 -4.3389 5.0625 38 1 3.4464 -5.9154 4.3003 39 1 2.1925 -5.6846 6.4267 40 1 1.0830 -5.7930 5.0394 41 1 2.5896 -3.4476 7.4074 42 1 3.0008 -2.7836 5.9392 43 1 0.2947 -2.1566 4.9246 44 1 -0.0253 -3.7331 4.1628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584720082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:18 Heat of formation + Delta-G solvation = -95.321662 kcal Electronic energy + Delta-G solvation = -24738.370705 eV Core-core repulsion = 21237.447276 eV Total energy + Delta-G solvation = -3500.923429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.52488 -36.71421 -35.66025 -35.33179 -35.28459 -32.44446 -32.42884 -30.95724 -28.45894 -28.40020 -25.31358 -25.10506 -22.56551 -21.90972 -21.31800 -19.36749 -18.62288 -17.39617 -16.87968 -16.81706 -16.30713 -15.68612 -15.23807 -14.96593 -14.67668 -14.56527 -14.12820 -14.05700 -13.66507 -13.09602 -12.85904 -12.53402 -12.49758 -12.41231 -12.25868 -12.02539 -11.94260 -11.84180 -11.57087 -11.37861 -11.30722 -11.26385 -11.19586 -10.72987 -10.53056 -10.48602 -10.32702 -10.17193 -10.11623 -9.58234 -9.06673 -8.73053 -8.63783 -8.10591 -6.14208 -4.14737 1.25973 3.25835 3.33662 3.39636 3.47586 4.12114 4.36625 4.45382 4.53007 4.60145 4.70668 4.93232 5.02535 5.13744 5.17688 5.19653 5.33550 5.38963 5.44323 5.48591 5.58748 5.64322 5.77409 5.82325 5.90526 5.99191 6.01202 6.06468 6.14165 6.16791 6.22276 6.34036 6.44492 6.48180 6.82451 7.09460 7.10199 7.27438 7.37761 7.49596 7.56770 8.42413 8.89492 9.46385 10.98056 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.004834 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.651585 B = 5791.439286 C = 6824.574366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.992 5.992 3 C 0.214 3.786 4 C -0.540 4.540 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.867 3.133 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.261 1.261 12 S 2.792 3.208 13 O -0.999 6.999 14 O -0.984 6.984 15 N -1.120 6.120 16 C 0.128 3.872 17 C -0.093 4.093 18 H 0.083 0.917 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.155 4.155 22 C 0.093 3.907 23 H 0.078 0.922 24 N -0.843 5.843 25 C -0.107 4.107 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.336 0.664 42 H 0.343 0.657 43 H 0.076 0.924 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -15.015 3.995 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.833 5.833 3 C 0.091 3.909 4 C -0.579 4.579 5 H 0.099 0.901 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.694 3.306 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.185 1.185 12 S 2.799 3.201 13 O -0.982 6.982 14 O -0.968 6.968 15 N -0.880 5.880 16 C 0.002 3.998 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.195 4.195 22 C -0.019 4.019 23 H 0.097 0.903 24 N -0.374 5.374 25 C -0.146 4.146 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.095 0.905 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.357 -14.779 3.320 15.762 hybrid contribution 1.320 0.130 -0.174 1.338 sum -3.037 -14.650 3.146 15.288 Atomic orbital electron populations 1.21283 0.79781 1.02507 1.00724 1.57375 1.14296 1.22702 1.88968 1.19605 0.92123 0.80777 0.98442 1.21450 1.37114 1.07472 0.91882 0.90056 1.24855 0.95321 0.97158 0.95442 1.69894 1.42406 1.21940 1.18841 0.86971 0.79349 0.80863 0.83409 1.20024 1.20946 1.18508 1.01500 0.72795 0.72682 0.73075 1.93543 1.67452 1.59881 1.77368 1.93574 1.41207 1.85220 1.76808 1.55826 1.14790 1.85715 1.31664 1.21217 0.87945 0.99488 0.91173 1.21334 0.98557 0.96321 0.95119 0.89831 1.21638 1.00948 0.95870 0.97042 1.21544 0.97602 1.00451 0.96331 1.22373 0.98762 0.98995 0.99335 1.21388 0.94918 0.90127 0.95442 0.90344 1.58960 1.18769 1.49253 1.10461 1.21559 0.97265 1.01505 0.94259 0.93668 0.92621 0.90525 0.93507 0.95092 0.92534 0.75300 0.91292 0.91168 0.91676 0.91516 0.92241 0.92034 0.92416 0.91493 0.85178 0.84129 0.90493 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.30 59.85 0.62 2.33 16 2 N -0.99 -19.80 3.23 -123.05 -0.40 -20.20 16 3 C 0.21 5.00 4.48 -5.19 -0.02 4.97 16 4 C -0.54 -14.31 9.94 -34.44 -0.34 -14.65 16 5 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 6 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 8 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 12 S 2.79 53.55 6.11 -107.50 -0.66 52.90 16 13 O -1.00 -19.74 16.68 -57.17 -0.95 -20.69 16 14 O -0.98 -21.98 16.69 -57.17 -0.95 -22.94 16 15 N -1.12 -17.88 5.58 -10.61 -0.06 -17.94 16 16 C 0.13 1.78 5.64 -4.04 -0.02 1.75 16 17 C -0.09 -1.08 1.95 -90.63 -0.18 -1.25 16 18 H 0.08 1.05 6.57 -51.92 -0.34 0.70 16 19 C -0.12 -1.22 5.09 -26.73 -0.14 -1.36 16 20 C -0.12 -1.08 5.66 -26.73 -0.15 -1.23 16 21 C -0.16 -1.28 5.61 -26.73 -0.15 -1.42 16 22 C 0.09 0.87 3.69 -67.74 -0.25 0.62 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 24 N -0.84 -8.45 9.12 -4.69 -0.04 -8.49 16 25 C -0.11 -1.12 4.91 -26.76 -0.13 -1.25 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.05 1.15 5.97 -51.93 -0.31 0.84 16 30 H 0.03 0.70 7.54 -51.93 -0.39 0.31 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.41 6.15 8.37 -34.47 -0.29 5.86 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 37 H 0.06 0.52 6.76 -51.93 -0.35 0.17 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.34 2.79 9.04 -39.29 -0.36 2.44 16 42 H 0.34 3.54 5.44 -39.30 -0.21 3.33 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -32.29 352.82 -9.77 -42.06 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.26 Total: 8.73 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.86 Total: -9.50 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: 0.27 Total: -72.00 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.91 Total: -43.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.66 Total: 52.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.29 -9.77 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584720082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.262 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds