Wall clock time and date at job start Fri Apr 10 2020 17:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50701 * 109.46970 * 85.00357 * 3 2 1 5 5 H 1.08005 * 119.99694 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00052 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00074 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00171 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47010 * 90.00165 * 8 6 4 10 10 H 1.48496 * 109.47338 * 210.00715 * 8 6 4 11 11 H 1.48504 * 109.46968 * 330.00328 * 8 6 4 12 12 S 1.65597 * 119.99926 * 180.27960 * 2 1 3 13 13 O 1.42095 * 106.40469 * 23.26116 * 12 2 1 14 14 O 1.42098 * 106.40441 * 156.18457 * 12 2 1 15 15 N 1.65602 * 107.21619 * 269.72326 * 12 2 1 16 16 C 1.46506 * 120.00056 * 64.99965 * 15 12 2 17 17 C 1.52998 * 109.47165 * 164.99874 * 16 15 12 18 18 H 1.09009 * 109.46996 * 54.99910 * 17 16 15 19 19 C 1.53000 * 109.47051 * 295.00507 * 17 16 15 20 20 C 1.53006 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.53001 * 109.47099 * 59.99906 * 20 19 17 22 22 C 1.52997 * 109.46942 * 299.99440 * 21 20 19 23 23 H 1.09001 * 109.47422 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.47347 * 300.00667 * 22 21 20 25 25 C 1.52990 * 109.47220 * 175.00152 * 17 16 15 26 26 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 27 27 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 28 28 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 29 29 H 1.08999 * 109.46864 * 204.99706 * 3 2 1 30 30 H 1.08999 * 109.46950 * 325.00088 * 3 2 1 31 31 H 0.97000 * 120.00214 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99945 * 245.00283 * 15 12 2 33 33 H 1.09000 * 109.47125 * 285.00032 * 16 15 12 34 34 H 1.09001 * 109.46698 * 45.00125 * 16 15 12 35 35 H 1.09006 * 109.47232 * 299.99592 * 19 17 16 36 36 H 1.08995 * 109.47494 * 59.99800 * 19 17 16 37 37 H 1.08996 * 109.46968 * 299.99010 * 20 19 17 38 38 H 1.09004 * 109.46712 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46975 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.47239 * 59.99945 * 21 20 19 41 41 H 1.00897 * 110.99585 * 299.99671 * 24 22 21 42 42 H 1.00891 * 111.00220 * 63.95239 * 24 22 21 43 43 H 1.09004 * 109.47189 * 299.99850 * 25 17 16 44 44 H 1.08996 * 109.47633 * 59.99898 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7657 1.4154 5 1 1.9283 1.1937 2.2332 6 6 2.9997 2.9508 1.6664 7 7 3.1258 3.3842 2.9017 8 14 3.7138 3.9403 0.2521 9 1 2.6949 4.8995 -0.2450 10 1 4.9080 4.6866 0.7233 11 1 4.1061 3.0213 -0.8465 12 16 2.2930 -1.4341 -0.0070 13 8 1.4091 -2.4051 -0.5501 14 8 3.5736 -1.1554 -0.5561 15 7 2.5446 -1.8625 1.5727 16 6 1.4047 -2.1837 2.4351 17 6 1.9029 -2.8939 3.6954 18 1 2.6582 -2.2788 4.1846 19 6 2.5139 -4.2434 3.3126 20 6 3.0115 -4.9538 4.5731 21 6 1.8381 -5.1780 5.5290 22 6 1.2272 -3.8286 5.9118 23 1 0.3915 -3.9882 6.5932 24 7 2.2449 -2.9998 6.5715 25 6 0.7300 -3.1181 4.6519 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 3.1858 1.1177 -0.4343 30 1 1.6501 2.0043 -0.5894 31 1 3.5893 4.2178 3.0783 32 1 3.4468 -1.9006 1.9271 33 1 0.8906 -1.2643 2.7153 34 1 0.7159 -2.8363 1.8987 35 1 1.7586 -4.8586 2.8234 36 1 3.3495 -4.0837 2.6312 37 1 3.7667 -4.3389 5.0625 38 1 3.4464 -5.9154 4.3003 39 1 2.1925 -5.6846 6.4267 40 1 1.0830 -5.7930 5.0394 41 1 2.5896 -3.4476 7.4074 42 1 3.0008 -2.7836 5.9392 43 1 0.2947 -2.1566 4.9246 44 1 -0.0253 -3.7331 4.1628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584720082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:17 Heat of formation + Delta-G solvation = -120.713095 kcal Electronic energy + Delta-G solvation = -24739.471760 eV Core-core repulsion = 21237.447276 eV Total energy + Delta-G solvation = -3502.024484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36590 -38.32457 -37.29882 -36.91343 -36.47780 -34.47390 -33.31656 -31.89297 -30.24506 -29.25287 -26.79574 -26.27674 -23.80770 -23.32493 -22.25954 -20.51271 -19.81520 -19.13916 -18.58330 -18.33920 -17.57755 -16.99287 -16.37952 -16.13021 -15.90690 -15.53239 -15.45043 -15.26112 -14.92668 -14.61523 -14.36799 -14.16191 -13.73127 -13.61864 -13.47868 -13.24779 -13.16734 -13.09647 -12.98413 -12.86150 -12.74390 -12.58607 -12.39538 -12.24778 -11.98180 -11.97302 -11.64905 -11.37711 -11.18638 -10.96838 -10.75235 -10.35714 -9.76048 -9.48318 -8.26463 -6.30637 -0.27303 1.36981 1.41321 1.50871 1.97734 2.36568 2.61195 3.08033 3.41560 3.67293 3.71407 3.81917 3.88336 4.01047 4.23388 4.26285 4.28243 4.46926 4.54461 4.63726 4.66441 4.70529 4.75456 4.78253 4.81807 4.94572 4.96519 5.03941 5.08086 5.17236 5.22265 5.25049 5.37052 5.38256 5.45905 5.48859 5.55084 5.72115 6.15112 6.33475 6.36016 6.65763 6.75018 7.33680 8.88460 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015283 B = 0.004834 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.651585 B = 5791.439286 C = 6824.574366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.999 5.999 3 C 0.220 3.780 4 C -0.534 4.534 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.937 5.937 8 Si 0.925 3.075 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.253 1.253 12 S 2.805 3.195 13 O -1.002 7.002 14 O -1.016 7.016 15 N -1.115 6.115 16 C 0.124 3.876 17 C -0.086 4.086 18 H 0.071 0.929 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.148 4.148 22 C 0.094 3.906 23 H 0.085 0.915 24 N -0.857 5.857 25 C -0.106 4.106 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.418 0.582 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.345 0.655 42 H 0.340 0.660 43 H 0.059 0.941 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -16.095 3.494 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.840 5.840 3 C 0.095 3.905 4 C -0.574 4.574 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.577 5.577 8 Si 0.749 3.251 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.177 1.177 12 S 2.812 3.188 13 O -0.986 6.986 14 O -1.001 7.001 15 N -0.876 5.876 16 C -0.002 4.002 17 C -0.107 4.107 18 H 0.089 0.911 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.187 4.187 22 C -0.017 4.017 23 H 0.103 0.897 24 N -0.388 5.388 25 C -0.144 4.144 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.253 0.747 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.078 0.922 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.922 -15.880 2.810 16.861 hybrid contribution 1.423 0.400 0.051 1.479 sum -3.499 -15.480 2.861 16.126 Atomic orbital electron populations 1.21537 0.77821 1.03425 1.02334 1.57352 1.15735 1.21597 1.89299 1.19359 0.92371 0.82423 0.96334 1.21646 1.35918 1.06904 0.92890 0.92693 1.25641 0.95980 0.98507 0.97695 1.70022 1.43968 1.22725 1.20954 0.86048 0.78874 0.79675 0.80544 1.18470 1.20944 1.17669 1.01008 0.71916 0.72396 0.73459 1.93532 1.67387 1.59712 1.77947 1.93524 1.42848 1.85646 1.78068 1.55623 1.15751 1.85267 1.30993 1.21394 0.87398 0.99405 0.91993 1.21261 0.98758 0.96589 0.94045 0.91111 1.21624 1.00705 0.95222 0.97827 1.21526 0.97906 1.00618 0.95623 1.22303 0.98488 0.98269 0.99661 1.21388 0.95008 0.90477 0.94843 0.89722 1.58967 1.18912 1.49984 1.10987 1.21553 0.97004 1.01147 0.94723 0.91675 0.90657 0.90785 0.94568 0.93689 0.92489 0.74732 0.92626 0.90015 0.91280 0.92285 0.92340 0.91103 0.91238 0.90839 0.84116 0.84506 0.92178 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.96 10.30 127.77 1.32 4.28 16 2 N -1.00 -38.98 3.23 -543.21 -1.75 -40.74 16 3 C 0.22 10.09 4.48 85.63 0.38 10.48 16 4 C -0.53 -28.47 9.94 25.60 0.25 -28.22 16 5 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 6 C 0.02 1.16 5.47 84.65 0.46 1.62 16 7 N -0.94 -55.70 13.96 21.44 0.30 -55.40 16 8 Si 0.92 42.41 27.47 68.60 1.88 44.29 16 9 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 12 S 2.80 105.71 6.11 -56.49 -0.35 105.37 16 13 O -1.00 -38.12 16.68 -128.00 -2.13 -40.25 16 14 O -1.02 -45.17 16.69 -128.00 -2.14 -47.31 16 15 N -1.11 -35.37 5.58 -187.48 -1.05 -36.42 16 16 C 0.12 3.38 5.64 86.38 0.49 3.87 16 17 C -0.09 -1.95 1.95 -10.80 -0.02 -1.97 16 18 H 0.07 1.79 6.57 -2.38 -0.02 1.77 16 19 C -0.12 -2.28 5.09 30.60 0.16 -2.12 16 20 C -0.12 -1.90 5.66 30.60 0.17 -1.72 16 21 C -0.15 -2.09 5.61 30.59 0.17 -1.92 16 22 C 0.09 1.62 3.69 44.90 0.17 1.78 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 N -0.86 -16.48 9.12 -168.75 -1.54 -18.01 16 25 C -0.11 -2.11 4.91 30.58 0.15 -1.95 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 28 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 29 H 0.04 1.76 5.97 -2.39 -0.01 1.74 16 30 H 0.05 1.94 7.54 -2.39 -0.02 1.93 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.42 12.54 8.37 -96.74 -0.81 11.73 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.04 7.75 -2.39 -0.02 2.02 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 36 H 0.06 1.24 7.54 -2.39 -0.02 1.22 16 37 H 0.06 0.95 6.76 -2.39 -0.02 0.93 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.35 5.35 9.04 -89.70 -0.81 4.53 16 42 H 0.34 6.89 5.44 -89.70 -0.49 6.40 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.92 352.82 -4.22 -72.14 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -1.15 Total: 32.20 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 3.70 Total: -15.88 kcal Atomic # 7 Polarization: -146.53 SS G_CDS: -4.04 Total: -150.57 kcal Atomic # 8 Polarization: -83.29 SS G_CDS: -4.27 Total: -87.56 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Atomic # 16 Polarization: 105.71 SS G_CDS: -0.35 Total: 105.37 kcal Total: -67.92 -4.22 -72.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584720082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.570 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds