Wall clock time and date at job start Fri Apr 10 2020 17:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00075 * 2 1 4 4 C 1.50696 * 109.47476 * 274.99928 * 3 2 1 5 5 H 1.08004 * 119.99672 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00561 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00402 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99642 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47230 * 90.00070 * 8 6 4 10 10 H 1.48503 * 109.46766 * 210.00107 * 8 6 4 11 11 H 1.48501 * 109.47184 * 329.99429 * 8 6 4 12 12 S 1.65600 * 120.00046 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40523 * 156.45882 * 12 2 1 14 14 O 1.42102 * 106.40262 * 23.53682 * 12 2 1 15 15 N 1.65601 * 107.21530 * 270.00009 * 12 2 1 16 16 C 1.46506 * 120.00293 * 64.99981 * 15 12 2 17 17 C 1.52998 * 109.47089 * 164.99972 * 16 15 12 18 18 H 1.08999 * 109.47398 * 304.99960 * 17 16 15 19 19 C 1.53008 * 109.47164 * 64.99936 * 17 16 15 20 20 C 1.52998 * 109.46761 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47505 * 299.99950 * 20 19 17 22 22 C 1.52998 * 109.47034 * 60.00110 * 21 20 19 23 23 H 1.09002 * 109.46981 * 180.02562 * 22 21 20 24 24 N 1.46905 * 109.47034 * 60.00154 * 22 21 20 25 25 C 1.52998 * 109.47005 * 184.99827 * 17 16 15 26 26 H 1.09005 * 109.46963 * 270.00069 * 1 2 3 27 27 H 1.09003 * 109.46991 * 29.99578 * 1 2 3 28 28 H 1.08997 * 109.47190 * 149.99858 * 1 2 3 29 29 H 1.08996 * 109.47329 * 35.00159 * 3 2 1 30 30 H 1.09007 * 109.46897 * 155.00216 * 3 2 1 31 31 H 0.97003 * 120.00189 * 180.02562 * 7 6 4 32 32 H 0.97006 * 119.99965 * 244.99945 * 15 12 2 33 33 H 1.08999 * 109.46831 * 44.99909 * 16 15 12 34 34 H 1.09000 * 109.46515 * 284.99681 * 16 15 12 35 35 H 1.08994 * 109.47141 * 300.00004 * 19 17 16 36 36 H 1.08999 * 109.46943 * 59.99746 * 19 17 16 37 37 H 1.08999 * 109.47301 * 60.00330 * 20 19 17 38 38 H 1.09004 * 109.46604 * 180.02562 * 20 19 17 39 39 H 1.08999 * 109.47151 * 300.00472 * 21 20 19 40 40 H 1.09001 * 109.47396 * 180.02562 * 21 20 19 41 41 H 1.00901 * 110.99869 * 60.00199 * 24 22 21 42 42 H 1.00896 * 110.99543 * 183.95322 * 24 22 21 43 43 H 1.08996 * 109.47495 * 59.99804 * 25 17 16 44 44 H 1.09006 * 109.47488 * 300.00297 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.1250 3.3848 -2.9015 8 14 3.7139 3.9402 -0.2518 9 1 5.1112 3.5055 0.0006 10 1 3.6999 5.3836 -0.6007 11 1 2.8981 3.7182 0.9690 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8593 1.5810 16 6 1.3946 -2.1788 2.4393 17 6 1.8875 -2.8864 3.7031 18 1 2.4787 -3.7587 3.4241 19 6 2.7519 -1.9252 4.5216 20 6 3.2443 -2.6326 5.7857 21 6 2.0429 -3.0766 6.6225 22 6 1.1786 -4.0378 5.8041 23 1 0.3224 -4.3538 6.4001 24 7 1.9751 -5.2136 5.4284 25 6 0.6864 -3.3308 4.5401 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6502 2.0043 0.5894 30 1 3.1859 1.1176 0.4343 31 1 3.5885 4.2185 -3.0781 32 1 3.4388 -1.8968 1.9392 33 1 0.7080 -2.8324 1.9013 34 1 0.8794 -1.2588 2.7155 35 1 3.6076 -1.6085 3.9253 36 1 2.1608 -1.0529 4.8006 37 1 3.8353 -3.5051 5.5070 38 1 3.8597 -1.9477 6.3690 39 1 1.4519 -2.2042 6.9012 40 1 2.3937 -3.5802 7.5233 41 1 2.3121 -5.6985 6.2466 42 1 1.4463 -5.8333 4.8331 43 1 0.0706 -4.0156 3.9571 44 1 0.0952 -2.4586 4.8192 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584720084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:21 Heat of formation + Delta-G solvation = -121.520238 kcal Electronic energy + Delta-G solvation = -24396.484248 eV Core-core repulsion = 20894.424763 eV Total energy + Delta-G solvation = -3502.059485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08132 -38.30103 -37.28779 -36.85845 -36.45768 -34.49965 -33.50595 -31.82859 -30.26673 -29.14841 -26.81754 -26.24685 -23.83131 -23.21343 -22.00492 -20.43964 -19.93055 -19.16312 -18.65162 -18.22455 -17.47453 -16.71576 -16.60048 -16.27733 -15.94339 -15.50747 -15.25128 -15.18371 -14.74402 -14.58971 -14.48108 -14.10907 -13.74971 -13.62584 -13.40134 -13.17061 -13.16066 -13.11663 -12.97402 -12.67818 -12.59627 -12.46430 -12.35625 -12.24070 -11.96619 -11.79262 -11.70025 -11.40205 -11.13110 -10.85713 -10.77889 -10.40745 -9.76209 -9.38851 -8.28462 -6.34585 -0.33422 1.37544 1.42084 1.50300 2.06227 2.36351 2.65407 3.05506 3.43272 3.68744 3.77411 3.85392 4.03430 4.07545 4.24014 4.36817 4.42986 4.52673 4.60418 4.67061 4.72451 4.73922 4.78519 4.82998 4.89887 4.92727 5.01082 5.09730 5.12982 5.18975 5.34610 5.38568 5.41265 5.47771 5.48870 5.50625 5.72449 5.73051 6.14612 6.32276 6.39241 6.68518 6.71728 7.28496 8.89265 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.003952 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.287538 B = 7083.670743 C = 7746.761598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.999 5.999 3 C 0.236 3.764 4 C -0.546 4.546 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.227 1.227 12 S 2.797 3.203 13 O -1.014 7.014 14 O -1.012 7.012 15 N -1.115 6.115 16 C 0.114 3.886 17 C -0.076 4.076 18 H 0.081 0.919 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.111 4.111 22 C 0.094 3.906 23 H 0.042 0.958 24 N -0.850 5.850 25 C -0.108 4.108 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.268 0.732 32 H 0.420 0.580 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.345 0.655 42 H 0.344 0.656 43 H 0.067 0.933 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -13.829 24.784 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.840 5.840 3 C 0.111 3.889 4 C -0.585 4.585 5 H 0.044 0.956 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.149 1.149 12 S 2.805 3.195 13 O -0.998 6.998 14 O -0.995 6.995 15 N -0.879 5.879 16 C -0.012 4.012 17 C -0.096 4.096 18 H 0.099 0.901 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.017 4.017 23 H 0.060 0.940 24 N -0.382 5.382 25 C -0.146 4.146 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.086 0.914 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.261 -13.645 23.484 27.665 hybrid contribution 0.061 0.256 0.410 0.488 sum -5.200 -13.389 23.895 27.879 Atomic orbital electron populations 1.21638 0.77854 1.03488 1.02928 1.57294 1.15808 1.21415 1.89502 1.19199 0.91967 0.82489 0.95273 1.21745 1.36392 1.06824 0.93520 0.95555 1.25975 0.95764 0.98657 0.98858 1.70079 1.44113 1.22923 1.21880 0.85749 0.79804 0.77528 0.80145 1.19489 1.20451 1.14939 1.01205 0.71989 0.72579 0.73717 1.93573 1.43035 1.85432 1.77726 1.93495 1.67812 1.60198 1.77998 1.55750 1.16143 1.85363 1.30654 1.21620 0.87068 1.00511 0.91997 1.21149 0.97557 0.98363 0.92502 0.90064 1.21594 0.99225 0.97996 0.96563 1.21353 0.97649 0.99949 0.95606 1.21565 0.96895 0.98801 0.97629 1.21259 0.94019 0.91419 0.95031 0.94038 1.58704 1.44130 1.11614 1.23766 1.21592 0.96518 1.00707 0.95804 0.89750 0.91316 0.91162 0.92439 0.94798 0.92348 0.74358 0.90872 0.90620 0.92775 0.91748 0.91637 0.92598 0.91315 0.91820 0.84180 0.84243 0.91424 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.74 10.68 127.77 1.36 4.10 16 2 N -1.00 -39.52 3.23 -543.22 -1.75 -41.27 16 3 C 0.24 10.84 4.15 85.63 0.36 11.19 16 4 C -0.55 -32.14 9.94 25.60 0.25 -31.89 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.30 5.47 84.65 0.46 0.76 16 7 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 8 Si 0.95 42.93 27.47 68.60 1.88 44.81 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.23 -8.84 6.54 99.48 0.65 -8.19 16 12 S 2.80 108.82 6.10 -56.49 -0.34 108.47 16 13 O -1.01 -49.32 17.11 -128.00 -2.19 -51.51 16 14 O -1.01 -42.03 16.21 -128.00 -2.07 -44.11 16 15 N -1.11 -30.05 5.93 -187.48 -1.11 -31.16 16 16 C 0.11 2.35 5.64 86.38 0.49 2.84 16 17 C -0.08 -1.26 2.14 -10.79 -0.02 -1.28 16 18 H 0.08 1.55 7.60 -2.39 -0.02 1.53 16 19 C -0.12 -1.91 5.08 30.60 0.16 -1.75 16 20 C -0.11 -1.56 5.77 30.59 0.18 -1.39 16 21 C -0.11 -1.28 5.61 30.59 0.17 -1.10 16 22 C 0.09 1.03 3.57 44.90 0.16 1.19 16 23 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 24 N -0.85 -9.13 7.72 -168.73 -1.30 -10.44 16 25 C -0.11 -1.36 4.85 30.58 0.15 -1.21 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 27 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 28 H 0.07 2.20 7.02 -2.39 -0.02 2.18 16 29 H 0.06 2.38 7.17 -2.39 -0.02 2.36 16 30 H 0.03 1.54 7.04 -2.38 -0.02 1.52 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 32 H 0.42 10.16 7.41 -96.74 -0.72 9.44 16 33 H 0.07 1.55 7.75 -2.39 -0.02 1.53 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 0.98 6.90 -2.39 -0.02 0.96 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.08 7.60 -2.39 -0.02 1.06 16 38 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.35 2.86 9.04 -89.69 -0.81 2.05 16 42 H 0.34 3.27 8.99 -89.70 -0.81 2.47 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -78.54 355.59 -4.26 -82.80 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -1.38 Total: 21.45 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 3.71 Total: -18.54 kcal Atomic # 7 Polarization: -139.50 SS G_CDS: -3.87 Total: -143.37 kcal Atomic # 8 Polarization: -91.35 SS G_CDS: -4.26 Total: -95.61 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: 108.82 SS G_CDS: -0.34 Total: 108.47 kcal Total: -78.54 -4.26 -82.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584720084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.724 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds