Wall clock time and date at job start Fri Apr 10 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47344 * 2 1 4 4 O 1.42904 * 109.47414 * 119.99856 * 2 1 3 5 5 C 1.35899 * 117.00195 * 155.15720 * 4 2 1 6 6 C 1.38734 * 120.05454 * 4.89539 * 5 4 2 7 7 C 1.38139 * 119.94372 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.05448 * 0.02763 * 7 6 5 9 9 C 1.50701 * 119.94415 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47147 * 89.99947 * 9 8 7 11 11 N 1.46499 * 109.46983 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99585 * 179.97438 * 11 10 9 13 13 O 1.21272 * 119.99999 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99749 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.47039 * 60.00133 * 14 12 11 16 16 C 1.53007 * 109.47180 * 300.00458 * 14 12 11 17 17 C 1.50693 * 109.47271 * 180.02562 * 14 12 11 18 18 H 1.08003 * 119.99634 * 5.45388 * 17 14 12 19 19 C 1.37877 * 120.00228 * 185.45005 * 17 14 12 20 20 N 1.31509 * 119.99821 * 9.35684 * 19 17 14 21 21 Si 1.86797 * 119.99887 * 189.35577 * 19 17 14 22 22 H 1.48498 * 109.47294 * 84.99657 * 21 19 17 23 23 H 1.48504 * 109.47219 * 204.99649 * 21 19 17 24 24 H 1.48501 * 109.47465 * 324.99588 * 21 19 17 25 25 C 1.38260 * 120.11399 * 0.25097 * 8 7 6 26 26 C 1.38146 * 120.05425 * 359.44806 * 25 8 7 27 27 H 1.09002 * 109.47190 * 299.99836 * 1 2 3 28 28 H 1.08997 * 109.47070 * 60.00190 * 1 2 3 29 29 H 1.09002 * 109.46730 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47228 * 239.99650 * 2 1 3 31 31 H 1.09000 * 109.46830 * 300.00453 * 3 2 1 32 32 H 1.09002 * 109.46843 * 59.99952 * 3 2 1 33 33 H 1.08993 * 109.47566 * 180.02562 * 3 2 1 34 34 H 1.08004 * 120.02761 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.97572 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47266 * 209.99912 * 9 8 7 37 37 H 1.09008 * 109.46833 * 330.00188 * 9 8 7 38 38 H 1.09003 * 109.46910 * 299.99954 * 10 9 8 39 39 H 1.08995 * 109.46845 * 60.00097 * 10 9 8 40 40 H 0.96993 * 120.00143 * 0.02562 * 11 10 9 41 41 H 1.08994 * 109.46722 * 303.72564 * 16 14 12 42 42 H 1.08998 * 109.46915 * 63.72848 * 16 14 12 43 43 H 1.08996 * 109.47072 * 183.72881 * 16 14 12 44 44 H 0.97000 * 120.00002 * 180.02562 * 20 19 17 45 45 H 1.07995 * 119.97350 * 179.70273 * 25 8 7 46 46 H 1.08000 * 120.03153 * 180.25514 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2480 -1.2219 1.0990 6 6 4.0328 -1.0275 -0.0284 7 6 5.2943 -1.5863 -0.0951 8 6 5.7749 -2.3393 0.9603 9 6 7.1513 -2.9482 0.8846 10 6 8.1761 -1.9646 1.4533 11 7 9.5142 -2.5564 1.3792 12 6 10.5821 -1.8658 1.8256 13 8 10.4351 -0.7548 2.2891 14 6 11.9585 -2.4747 1.7499 15 1 12.2023 -2.6935 0.7103 16 6 11.9889 -3.7697 2.5643 17 6 12.9679 -1.5059 2.3099 18 1 12.6369 -0.5833 2.7634 19 6 14.3138 -1.7975 2.2434 20 7 14.7301 -2.8234 1.5337 21 14 15.5460 -0.7351 3.1613 22 1 15.6583 -1.2074 4.5647 23 1 16.8719 -0.8306 2.4993 24 1 15.0875 0.6773 3.1496 25 6 4.9925 -2.5393 2.0826 26 6 3.7327 -1.9775 2.1568 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 3.6577 -0.4397 -0.8532 35 1 5.9056 -1.4356 -0.9728 36 1 7.1728 -3.8709 1.4644 37 1 7.3953 -3.1666 -0.1551 38 1 8.1547 -1.0419 0.8735 39 1 7.9321 -1.7463 2.4929 40 1 9.6318 -3.4448 1.0081 41 1 11.6808 -3.5617 3.5889 42 1 11.3068 -4.4944 2.1198 43 1 13.0005 -4.1753 2.5643 44 1 15.6770 -3.0287 1.4872 45 1 5.3683 -3.1318 2.9036 46 1 3.1235 -2.1305 3.0354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585100269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:29 Heat of formation + Delta-G solvation = -74.306438 kcal Electronic energy + Delta-G solvation = -23907.792407 eV Core-core repulsion = 20375.876658 eV Total energy + Delta-G solvation = -3531.915749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.55500 -38.86569 -38.14911 -34.91888 -33.64616 -33.56195 -31.78486 -31.12868 -30.39141 -27.91982 -27.45074 -25.06953 -23.97965 -23.44147 -22.15731 -21.58509 -20.70658 -19.28203 -18.55218 -16.38755 -16.29664 -15.96632 -15.76932 -15.69850 -14.99444 -14.93804 -14.55215 -14.33266 -14.25900 -13.69527 -13.57802 -13.24688 -13.12264 -12.85511 -12.74583 -12.60485 -12.41709 -12.28274 -11.75079 -11.65924 -11.55666 -11.50306 -11.18831 -10.97677 -10.92109 -10.82426 -10.77950 -10.60883 -10.24831 -9.91892 -9.16356 -8.99363 -8.51062 -8.38825 -8.32313 -8.20477 -6.02833 -4.01097 1.17546 1.24303 2.89617 3.36959 3.42008 3.48361 3.55142 3.80212 3.99080 4.33355 4.46275 4.51026 4.58267 4.66230 4.72055 4.88908 5.02308 5.09782 5.12776 5.18726 5.23023 5.29547 5.32067 5.32682 5.43441 5.52321 5.64114 5.68380 5.74714 5.84545 6.04250 6.05797 6.12836 6.18536 6.37383 6.52648 6.57833 6.60826 6.81708 6.90260 7.13961 7.21957 7.47359 7.68535 8.00695 8.15021 8.50876 9.08009 9.30615 9.62977 11.07782 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.032568 B = 0.002115 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.522757 B =13237.838142 C =13627.677415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.182 4.182 4 O -0.313 6.313 5 C 0.125 3.875 6 C -0.209 4.209 7 C -0.073 4.073 8 C -0.113 4.113 9 C -0.087 4.087 10 C 0.126 3.874 11 N -0.749 5.749 12 C 0.518 3.482 13 O -0.546 6.546 14 C 0.027 3.973 15 H 0.059 0.941 16 C -0.125 4.125 17 C -0.502 4.502 18 H 0.074 0.926 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.273 1.273 25 C -0.073 4.073 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.395 0.605 41 H 0.032 0.968 42 H 0.017 0.983 43 H 0.075 0.925 44 H 0.260 0.740 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.186 -0.474 -5.413 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.227 6.227 5 C 0.080 3.920 6 C -0.227 4.227 7 C -0.092 4.092 8 C -0.114 4.114 9 C -0.125 4.125 10 C 0.002 3.998 11 N -0.403 5.403 12 C 0.308 3.692 13 O -0.422 6.422 14 C 0.006 3.994 15 H 0.076 0.924 16 C -0.184 4.184 17 C -0.540 4.540 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.198 1.198 25 C -0.092 4.092 26 C -0.170 4.170 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.229 0.771 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.260 0.282 -4.963 27.710 hybrid contribution 0.798 0.183 0.032 0.820 sum -26.462 0.464 -4.931 26.921 Atomic orbital electron populations 1.21853 0.92497 1.03134 1.03074 1.22430 0.95347 0.92707 0.87487 1.22397 1.02448 0.95909 1.03159 1.86111 1.29425 1.68346 1.38822 1.18992 0.84616 0.93746 0.94620 1.21246 0.96404 1.06263 0.98815 1.20883 0.94620 0.95359 0.98288 1.19655 0.96228 1.00597 0.94874 1.20745 0.90767 0.98536 1.02460 1.21148 0.81968 0.95862 1.00862 1.46314 1.06470 1.20808 1.66754 1.21949 0.87119 0.85320 0.74813 1.90530 1.86426 1.20475 1.44786 1.18884 0.87015 0.94620 0.98927 0.92363 1.21668 1.01910 0.96441 0.98337 1.21104 0.89855 1.05071 1.37968 0.90834 1.24950 0.98339 0.95654 0.95220 1.69957 1.15233 1.28987 1.39256 0.86523 0.80021 0.81030 0.79981 1.20581 1.21424 1.19810 1.20909 0.92750 0.98131 0.97363 1.20414 0.97119 1.00938 0.98554 0.91445 0.90523 0.91672 0.90887 0.91015 0.91376 0.91618 0.85434 0.85657 0.90386 0.90460 0.92227 0.92161 0.77115 0.94866 0.96411 0.90622 0.92995 0.85199 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.56 37.16 0.36 -0.46 16 2 C 0.08 0.56 2.85 -26.73 -0.08 0.48 16 3 C -0.18 -1.22 9.18 37.16 0.34 -0.88 16 4 O -0.31 -3.21 9.80 -19.42 -0.19 -3.40 16 5 C 0.13 1.36 6.60 -39.21 -0.26 1.10 16 6 C -0.21 -2.10 8.25 -39.43 -0.33 -2.42 16 7 C -0.07 -0.77 9.69 -39.61 -0.38 -1.15 16 8 C -0.11 -1.23 5.13 -104.60 -0.54 -1.77 16 9 C -0.09 -0.95 5.46 -27.88 -0.15 -1.10 16 10 C 0.13 1.88 5.66 -4.04 -0.02 1.86 16 11 N -0.75 -12.98 5.46 -60.29 -0.33 -13.31 16 12 C 0.52 12.00 7.15 -10.98 -0.08 11.92 16 13 O -0.55 -14.65 15.47 5.56 0.09 -14.57 16 14 C 0.03 0.67 2.50 -92.92 -0.23 0.44 16 15 H 0.06 1.52 8.09 -51.93 -0.42 1.10 16 16 C -0.13 -2.83 8.94 37.16 0.33 -2.50 16 17 C -0.50 -14.43 8.28 -34.44 -0.29 -14.71 16 18 H 0.07 2.24 6.79 -52.48 -0.36 1.89 16 19 C 0.06 1.67 5.17 -17.82 -0.09 1.58 16 20 N -0.90 -25.51 12.15 55.43 0.67 -24.84 16 21 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.07 -0.77 9.69 -39.61 -0.38 -1.16 16 26 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.49 6.29 -51.93 -0.33 0.16 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.51 6.94 -51.93 -0.36 0.15 16 34 H 0.13 1.04 5.44 -52.48 -0.29 0.76 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.08 0.76 8.08 -51.92 -0.42 0.34 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 5.78 7.96 -40.82 -0.32 5.45 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.32 7.67 -51.93 -0.40 -0.08 16 43 H 0.07 1.87 6.82 -51.93 -0.35 1.52 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -33.00 377.63 -8.74 -41.74 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.45 Total: 2.44 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.19 Total: -10.79 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.34 Total: -38.15 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.10 Total: -17.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.00 -8.74 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585100269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.569 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds