Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38041 * 126.29432 * 2 1 4 4 C 1.47423 * 126.41666 * 0.03051 * 3 2 1 5 5 O 1.21605 * 119.99736 * 320.34211 * 4 3 2 6 6 N 1.34774 * 120.00618 * 140.34285 * 4 3 2 7 7 C 1.47140 * 120.18004 * 354.72085 * 6 4 3 8 8 C 1.53629 * 107.51597 * 107.83884 * 7 6 4 9 9 C 1.53488 * 108.45509 * 69.76368 * 8 7 6 10 10 C 1.52460 * 109.13711 * 245.78533 * 9 8 7 11 11 C 1.53117 * 109.68653 * 43.93161 * 10 9 8 12 12 C 1.53435 * 109.32251 * 77.03661 * 11 10 9 13 13 C 1.46057 * 120.18675 * 174.69423 * 6 4 3 14 14 C 1.41291 * 107.17026 * 179.76143 * 3 2 1 15 15 N 1.30449 * 108.02376 * 0.24491 * 14 3 2 16 16 N 1.34263 * 126.28846 * 180.18720 * 2 1 3 17 17 C 1.46498 * 125.75503 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47053 * 270.26816 * 17 16 2 19 19 H 1.08002 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99632 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99546 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47283 * 89.99833 * 22 20 18 24 24 H 1.48498 * 109.47010 * 209.99977 * 22 20 18 25 25 H 1.48504 * 109.47130 * 329.99637 * 22 20 18 26 26 H 1.09004 * 109.47408 * 89.99531 * 1 2 3 27 27 H 1.08995 * 109.47792 * 209.99786 * 1 2 3 28 28 H 1.09006 * 109.46733 * 329.99825 * 1 2 3 29 29 H 1.08997 * 109.84955 * 348.33431 * 7 6 4 30 30 H 1.08999 * 109.84515 * 227.33845 * 7 6 4 31 31 H 1.08997 * 109.63446 * 310.06886 * 8 7 6 32 32 H 1.09000 * 109.63415 * 189.45568 * 8 7 6 33 33 H 1.09003 * 109.52802 * 5.68373 * 9 8 7 34 34 H 1.09001 * 109.52135 * 125.88901 * 9 8 7 35 35 H 1.08995 * 109.43761 * 164.00045 * 10 9 8 36 36 H 1.09005 * 109.43646 * 283.91231 * 10 9 8 37 37 H 1.08996 * 109.49976 * 196.99061 * 11 10 9 38 38 H 1.09002 * 109.49413 * 317.08315 * 11 10 9 39 39 H 1.09000 * 109.63314 * 47.36204 * 12 11 10 40 40 H 1.08999 * 109.63239 * 167.76127 * 12 11 10 41 41 H 1.09004 * 109.36437 * 172.88646 * 13 6 4 42 42 H 1.08998 * 109.25665 * 53.22586 * 13 6 4 43 43 H 1.08006 * 125.98872 * 180.21123 * 14 3 2 44 44 H 1.09003 * 109.47266 * 30.26953 * 17 16 2 45 45 H 1.09001 * 109.47316 * 150.26707 * 17 16 2 46 46 H 0.96996 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8859 2.5202 0.0006 5 8 0.9308 2.8600 -0.6710 6 7 2.5439 3.4306 0.7455 7 6 3.6254 3.0055 1.6480 8 6 4.9529 3.4703 1.0299 9 6 5.0225 5.0008 1.1227 10 6 4.9935 5.5887 -0.2837 11 6 3.9284 4.8737 -1.1197 12 6 2.5400 5.3954 -0.7269 13 6 2.1877 4.8445 0.6609 14 6 3.6590 0.6497 0.0056 15 7 3.6339 -0.6545 0.0034 16 7 2.3016 -1.0822 -0.0035 17 6 1.8499 -2.4758 -0.0076 18 6 1.6893 -2.9559 1.4119 19 1 1.9019 -2.2894 2.2347 20 6 1.2698 -4.2457 1.6600 21 7 1.1291 -4.6645 2.8988 22 14 0.9014 -5.3982 0.2369 23 1 2.1354 -6.1357 -0.1351 24 1 -0.1500 -6.3653 0.6426 25 1 0.4257 -4.6098 -0.9282 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.6220 1.9198 1.7441 30 1 3.4922 3.4651 2.6274 31 1 4.9973 3.1642 -0.0152 32 1 5.7860 3.0317 1.5790 33 1 4.1683 5.3707 1.6899 34 1 5.9466 5.2939 1.6211 35 1 4.7577 6.6513 -0.2279 36 1 5.9692 5.4577 -0.7517 37 1 4.1045 5.0690 -2.1775 38 1 3.9799 3.8009 -0.9340 39 1 2.5534 6.4849 -0.6958 40 1 1.8026 5.0589 -1.4557 41 1 2.7360 5.4015 1.4207 42 1 1.1172 4.9565 0.8331 43 1 4.5449 1.2675 0.0103 44 1 0.8934 -2.5463 -0.5255 45 1 2.5866 -3.0951 -0.5194 46 1 0.8343 -5.5720 3.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = 44.048984 kcal Electronic energy + Delta-G solvation = -26320.059287 eV Core-core repulsion = 22825.568566 eV Total energy + Delta-G solvation = -3494.490721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09819 -39.84649 -37.42145 -34.34906 -33.78201 -33.03249 -32.16382 -31.27719 -28.59196 -27.73841 -26.99198 -26.44626 -23.77517 -22.97095 -22.14936 -21.01889 -20.32187 -19.14581 -18.25664 -17.22690 -16.94938 -15.95726 -15.90969 -15.49990 -15.11770 -14.74914 -14.44753 -14.28201 -13.89307 -13.71512 -13.30042 -13.21253 -12.80885 -12.60164 -12.34885 -12.30868 -12.22319 -12.14788 -11.89607 -11.65387 -11.46820 -11.45716 -11.21364 -10.99452 -10.86052 -10.74436 -10.41624 -10.36561 -10.27186 -10.03814 -9.79481 -9.34260 -8.86105 -8.62926 -8.48958 -7.89145 -6.34473 -4.39101 2.22841 2.76069 3.05737 3.11902 3.17041 3.20066 3.35390 3.66573 4.14771 4.55410 4.71378 4.75414 4.90218 4.93408 4.96957 5.08438 5.12458 5.15314 5.23534 5.39025 5.41060 5.55305 5.60226 5.61694 5.66225 5.73013 5.86803 5.87221 5.90591 5.92560 6.00388 6.08210 6.10660 6.14340 6.26026 6.28542 6.38574 6.40965 6.43764 6.59516 6.77084 7.05230 7.17560 7.58310 7.64369 8.18909 8.29963 8.58464 8.68509 9.19824 10.77665 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003634 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386603 B = 7703.963229 C = 8045.942068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.158 3.842 3 C -0.324 4.324 4 C 0.606 3.394 5 O -0.548 6.548 6 N -0.609 5.609 7 C 0.102 3.898 8 C -0.152 4.152 9 C -0.128 4.128 10 C -0.117 4.117 11 C -0.132 4.132 12 C -0.135 4.135 13 C 0.115 3.885 14 C 0.055 3.945 15 N -0.292 5.292 16 N -0.313 5.313 17 C 0.225 3.775 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.883 5.883 22 Si 0.873 3.127 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.178 0.822 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 18.728 -4.460 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.022 3.978 3 C -0.339 4.339 4 C 0.396 3.604 5 O -0.426 6.426 6 N -0.342 5.342 7 C -0.021 4.021 8 C -0.190 4.190 9 C -0.165 4.165 10 C -0.155 4.155 11 C -0.170 4.170 12 C -0.173 4.173 13 C -0.007 4.007 14 C -0.131 4.131 15 N -0.112 5.112 16 N -0.090 5.090 17 C 0.106 3.894 18 C -0.583 4.583 19 H 0.100 0.900 20 C -0.123 4.123 21 N -0.519 5.519 22 Si 0.699 3.301 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.159 17.481 -4.689 18.820 hybrid contribution -0.423 0.013 -0.472 0.634 sum 4.736 17.494 -5.161 18.844 Atomic orbital electron populations 1.20492 0.87066 1.04252 1.03315 1.21337 0.94724 0.86391 0.95378 1.19678 0.93275 0.92662 1.28302 1.17373 0.81162 0.83919 0.77956 1.90700 1.27990 1.81012 1.42869 1.47808 1.36652 1.06615 1.43116 1.22175 0.85549 1.02171 0.92248 1.22570 0.97724 0.96200 1.02515 1.21896 1.01872 0.95432 0.97334 1.21539 0.98862 0.99402 0.95691 1.21971 0.94164 1.02055 0.98760 1.22079 0.97629 0.99708 0.97883 1.21544 1.00390 0.81110 0.97700 1.23882 0.96410 0.92331 1.00472 1.77142 0.98116 1.12321 1.23669 1.48839 1.02683 1.07398 1.50096 1.20144 0.95722 0.73427 1.00130 1.21100 1.48002 0.99184 0.90056 0.90023 1.24792 0.94274 0.97418 0.95862 1.69863 1.45166 1.18153 1.18767 0.86896 0.79088 0.81499 0.82612 1.19521 1.20421 1.18828 0.90176 0.89631 0.90034 0.88371 0.90944 0.90040 0.90907 0.91044 0.92268 0.92286 0.92433 0.92732 0.89960 0.91540 0.90922 0.89757 0.91746 0.80494 0.93042 0.93170 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.35 36.00 0.34 -1.28 16 2 C 0.16 3.13 7.00 -81.60 -0.57 2.56 16 3 C -0.32 -5.86 5.18 -105.07 -0.54 -6.40 16 4 C 0.61 10.05 6.45 -12.52 -0.08 9.97 16 5 O -0.55 -10.39 15.46 5.27 0.08 -10.31 16 6 N -0.61 -7.82 1.72 -174.16 -0.30 -8.12 16 7 C 0.10 1.12 5.26 -3.37 -0.02 1.10 16 8 C -0.15 -1.37 4.70 -26.15 -0.12 -1.50 16 9 C -0.13 -1.01 5.48 -26.75 -0.15 -1.15 16 10 C -0.12 -0.96 5.67 -26.95 -0.15 -1.11 16 11 C -0.13 -1.35 5.44 -26.45 -0.14 -1.49 16 12 C -0.13 -1.42 5.55 -26.29 -0.15 -1.56 16 13 C 0.12 1.25 5.11 -4.07 -0.02 1.23 16 14 C 0.06 0.96 9.63 -16.98 -0.16 0.80 16 15 N -0.29 -6.14 12.50 30.86 0.39 -5.75 16 16 N -0.31 -6.86 3.56 -57.78 -0.21 -7.06 16 17 C 0.22 5.19 4.85 -5.19 -0.03 5.17 16 18 C -0.55 -14.70 9.94 -34.44 -0.34 -15.05 16 19 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 21 N -0.88 -25.54 13.96 55.43 0.77 -24.77 16 22 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 28 H 0.08 1.36 7.71 -51.93 -0.40 0.96 16 29 H 0.10 1.29 5.02 -51.93 -0.26 1.03 16 30 H 0.07 0.69 7.97 -51.93 -0.41 0.28 16 31 H 0.08 0.81 4.35 -51.93 -0.23 0.59 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.55 4.49 -51.93 -0.23 0.31 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.44 7.85 -51.93 -0.41 0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.98 3.68 -51.93 -0.19 0.79 16 39 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 40 H 0.07 0.94 7.41 -51.93 -0.38 0.56 16 41 H 0.08 0.72 5.07 -51.93 -0.26 0.46 16 42 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.18 2.42 5.42 -52.48 -0.28 2.14 16 44 H 0.05 1.12 6.69 -51.93 -0.35 0.77 16 45 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -30.93 344.47 -7.72 -38.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.74 Total: 3.79 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.24 Total: -6.61 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.65 Total: -45.71 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.93 -7.72 -38.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.695 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds