Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38041 * 126.29432 * 2 1 4 4 C 1.47423 * 126.41666 * 0.03051 * 3 2 1 5 5 O 1.21605 * 119.99736 * 320.34211 * 4 3 2 6 6 N 1.34774 * 120.00618 * 140.34285 * 4 3 2 7 7 C 1.47140 * 120.18004 * 354.72085 * 6 4 3 8 8 C 1.53629 * 107.51597 * 107.83884 * 7 6 4 9 9 C 1.53488 * 108.45509 * 69.76368 * 8 7 6 10 10 C 1.52460 * 109.13711 * 245.78533 * 9 8 7 11 11 C 1.53117 * 109.68653 * 43.93161 * 10 9 8 12 12 C 1.53435 * 109.32251 * 77.03661 * 11 10 9 13 13 C 1.46057 * 120.18675 * 174.69423 * 6 4 3 14 14 C 1.41291 * 107.17026 * 179.76143 * 3 2 1 15 15 N 1.30449 * 108.02376 * 0.24491 * 14 3 2 16 16 N 1.34263 * 126.28846 * 180.18720 * 2 1 3 17 17 C 1.46498 * 125.75503 * 359.97438 * 16 2 1 18 18 C 1.50699 * 109.47053 * 270.26816 * 17 16 2 19 19 H 1.08002 * 120.00309 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99632 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99546 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47283 * 89.99833 * 22 20 18 24 24 H 1.48498 * 109.47010 * 209.99977 * 22 20 18 25 25 H 1.48504 * 109.47130 * 329.99637 * 22 20 18 26 26 H 1.09004 * 109.47408 * 89.99531 * 1 2 3 27 27 H 1.08995 * 109.47792 * 209.99786 * 1 2 3 28 28 H 1.09006 * 109.46733 * 329.99825 * 1 2 3 29 29 H 1.08997 * 109.84955 * 348.33431 * 7 6 4 30 30 H 1.08999 * 109.84515 * 227.33845 * 7 6 4 31 31 H 1.08997 * 109.63446 * 310.06886 * 8 7 6 32 32 H 1.09000 * 109.63415 * 189.45568 * 8 7 6 33 33 H 1.09003 * 109.52802 * 5.68373 * 9 8 7 34 34 H 1.09001 * 109.52135 * 125.88901 * 9 8 7 35 35 H 1.08995 * 109.43761 * 164.00045 * 10 9 8 36 36 H 1.09005 * 109.43646 * 283.91231 * 10 9 8 37 37 H 1.08996 * 109.49976 * 196.99061 * 11 10 9 38 38 H 1.09002 * 109.49413 * 317.08315 * 11 10 9 39 39 H 1.09000 * 109.63314 * 47.36204 * 12 11 10 40 40 H 1.08999 * 109.63239 * 167.76127 * 12 11 10 41 41 H 1.09004 * 109.36437 * 172.88646 * 13 6 4 42 42 H 1.08998 * 109.25665 * 53.22586 * 13 6 4 43 43 H 1.08006 * 125.98872 * 180.21123 * 14 3 2 44 44 H 1.09003 * 109.47266 * 30.26953 * 17 16 2 45 45 H 1.09001 * 109.47316 * 150.26707 * 17 16 2 46 46 H 0.96996 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8859 2.5202 0.0006 5 8 0.9308 2.8600 -0.6710 6 7 2.5439 3.4306 0.7455 7 6 3.6254 3.0055 1.6480 8 6 4.9529 3.4703 1.0299 9 6 5.0225 5.0008 1.1227 10 6 4.9935 5.5887 -0.2837 11 6 3.9284 4.8737 -1.1197 12 6 2.5400 5.3954 -0.7269 13 6 2.1877 4.8445 0.6609 14 6 3.6590 0.6497 0.0056 15 7 3.6339 -0.6545 0.0034 16 7 2.3016 -1.0822 -0.0035 17 6 1.8499 -2.4758 -0.0076 18 6 1.6893 -2.9559 1.4119 19 1 1.9019 -2.2894 2.2347 20 6 1.2698 -4.2457 1.6600 21 7 1.1291 -4.6645 2.8988 22 14 0.9014 -5.3982 0.2369 23 1 2.1354 -6.1357 -0.1351 24 1 -0.1500 -6.3653 0.6426 25 1 0.4257 -4.6098 -0.9282 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 3.6220 1.9198 1.7441 30 1 3.4922 3.4651 2.6274 31 1 4.9973 3.1642 -0.0152 32 1 5.7860 3.0317 1.5790 33 1 4.1683 5.3707 1.6899 34 1 5.9466 5.2939 1.6211 35 1 4.7577 6.6513 -0.2279 36 1 5.9692 5.4577 -0.7517 37 1 4.1045 5.0690 -2.1775 38 1 3.9799 3.8009 -0.9340 39 1 2.5534 6.4849 -0.6958 40 1 1.8026 5.0589 -1.4557 41 1 2.7360 5.4015 1.4207 42 1 1.1172 4.9565 0.8331 43 1 4.5449 1.2675 0.0103 44 1 0.8934 -2.5463 -0.5255 45 1 2.5866 -3.0951 -0.5194 46 1 0.8343 -5.5720 3.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585126189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = 25.905893 kcal Electronic energy + Delta-G solvation = -26320.846031 eV Core-core repulsion = 22825.568566 eV Total energy + Delta-G solvation = -3495.277465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50927 -40.99683 -38.53494 -35.84945 -35.13025 -34.07110 -33.76508 -32.82670 -30.01853 -28.98558 -28.15735 -27.59438 -25.12727 -24.45302 -23.22696 -22.18377 -21.32175 -20.46972 -19.50301 -19.27613 -18.13976 -17.20408 -17.07160 -16.51329 -16.40432 -16.18504 -15.79853 -15.62130 -15.20731 -14.80878 -14.62530 -14.31098 -14.21347 -14.02996 -13.81335 -13.67718 -13.49060 -13.19925 -13.06502 -13.00989 -12.78849 -12.60795 -12.32340 -12.24637 -12.08876 -11.85096 -11.81062 -11.75485 -11.46391 -11.16909 -10.93017 -10.91895 -10.55274 -10.23366 -9.64292 -9.33787 -8.43060 -6.54602 0.72889 1.32518 1.33594 1.35694 1.44383 1.62758 2.09935 2.24263 2.35706 2.89433 3.60445 3.68838 3.82938 3.93109 4.02836 4.10453 4.12581 4.19616 4.28327 4.29767 4.37526 4.49057 4.52484 4.61752 4.62544 4.71097 4.73677 4.77921 4.86670 4.91941 4.95882 5.07777 5.13078 5.15899 5.17654 5.20090 5.30721 5.35320 5.41799 5.53381 5.60163 5.65532 5.80682 5.83838 6.21361 6.47230 6.48275 6.77131 7.09267 7.31846 8.73102 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003634 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.386603 B = 7703.963229 C = 8045.942068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.138 3.862 3 C -0.323 4.323 4 C 0.603 3.397 5 O -0.577 6.577 6 N -0.597 5.597 7 C 0.098 3.902 8 C -0.148 4.148 9 C -0.124 4.124 10 C -0.112 4.112 11 C -0.132 4.132 12 C -0.130 4.130 13 C 0.111 3.889 14 C 0.077 3.923 15 N -0.330 5.330 16 N -0.336 5.336 17 C 0.234 3.766 18 C -0.551 4.551 19 H 0.029 0.971 20 C 0.026 3.974 21 N -0.933 5.933 22 Si 0.946 3.054 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.237 1.237 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.117 0.883 42 H 0.053 0.947 43 H 0.212 0.788 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 20.452 -5.479 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.339 4.339 4 C 0.393 3.607 5 O -0.457 6.457 6 N -0.329 5.329 7 C -0.024 4.024 8 C -0.186 4.186 9 C -0.161 4.161 10 C -0.149 4.149 11 C -0.170 4.170 12 C -0.168 4.168 13 C -0.010 4.010 14 C -0.110 4.110 15 N -0.150 5.150 16 N -0.114 5.114 17 C 0.114 3.886 18 C -0.589 4.589 19 H 0.048 0.952 20 C -0.175 4.175 21 N -0.571 5.571 22 Si 0.768 3.232 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.160 1.160 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.071 0.929 43 H 0.228 0.772 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.101 19.254 -5.695 20.985 hybrid contribution -0.643 -0.353 -0.050 0.735 sum 5.458 18.901 -5.745 20.495 Atomic orbital electron populations 1.20496 0.85813 1.03908 1.04281 1.21863 0.95851 0.86538 0.95402 1.19971 0.93372 0.93350 1.27171 1.17239 0.81262 0.83784 0.78420 1.90683 1.29301 1.81322 1.44426 1.47835 1.36136 1.07010 1.41905 1.22329 0.86079 1.00965 0.93076 1.22528 0.96654 0.97523 1.01877 1.21872 1.02911 0.94020 0.97275 1.21500 0.98179 0.99855 0.95391 1.21953 0.94656 1.01208 0.99148 1.22036 0.97012 1.01122 0.96659 1.21768 1.00314 0.79923 0.99012 1.24387 0.97340 0.91433 0.97793 1.77081 0.98158 1.14079 1.25634 1.48702 1.03308 1.07203 1.52158 1.19899 0.96642 0.74559 0.97520 1.21174 1.48029 0.98835 0.90881 0.95222 1.25764 0.93661 0.99152 0.98905 1.70014 1.46588 1.18978 1.21544 0.85739 0.79140 0.78977 0.79377 1.18876 1.19945 1.16020 0.88486 0.90596 0.89596 0.90799 0.88815 0.90950 0.89523 0.90566 0.90677 0.90909 0.91990 0.93085 0.91763 0.89074 0.93962 0.86576 0.92877 0.77180 0.91198 0.92818 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.35 71.23 0.67 -2.39 16 2 C 0.14 5.56 7.00 42.14 0.29 5.86 16 3 C -0.32 -11.73 5.18 -20.15 -0.10 -11.83 16 4 C 0.60 19.87 6.45 86.66 0.56 20.43 16 5 O -0.58 -21.96 15.46 -4.05 -0.06 -22.02 16 6 N -0.60 -14.57 1.72 -823.16 -1.42 -15.98 16 7 C 0.10 1.96 5.26 86.47 0.45 2.42 16 8 C -0.15 -2.26 4.70 30.97 0.15 -2.12 16 9 C -0.12 -1.46 5.48 30.58 0.17 -1.29 16 10 C -0.11 -1.44 5.67 30.45 0.17 -1.26 16 11 C -0.13 -2.43 5.44 30.78 0.17 -2.26 16 12 C -0.13 -2.51 5.55 30.88 0.17 -2.34 16 13 C 0.11 2.20 5.11 86.60 0.44 2.64 16 14 C 0.08 2.64 9.63 85.65 0.82 3.47 16 15 N -0.33 -14.00 12.50 -56.27 -0.70 -14.70 16 16 N -0.34 -14.97 3.56 -336.71 -1.20 -16.17 16 17 C 0.23 10.86 4.85 85.63 0.42 11.28 16 18 C -0.55 -30.76 9.94 25.60 0.25 -30.50 16 19 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 20 C 0.03 1.41 5.47 84.66 0.46 1.87 16 21 N -0.93 -55.68 13.96 21.45 0.30 -55.38 16 22 Si 0.95 40.28 27.47 68.60 1.88 42.17 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 26 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.08 2.78 7.71 -2.39 -0.02 2.76 16 28 H 0.09 2.90 7.71 -2.38 -0.02 2.88 16 29 H 0.07 1.88 5.02 -2.39 -0.01 1.87 16 30 H 0.09 1.52 7.97 -2.39 -0.02 1.50 16 31 H 0.07 1.28 4.35 -2.39 -0.01 1.27 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 0.83 4.49 -2.39 -0.01 0.82 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.78 7.85 -2.39 -0.02 0.76 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.43 3.68 -2.39 -0.01 1.42 16 39 H 0.09 1.31 7.89 -2.39 -0.02 1.29 16 40 H 0.04 1.08 7.41 -2.39 -0.02 1.06 16 41 H 0.12 1.57 5.07 -2.38 -0.01 1.55 16 42 H 0.05 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.21 5.50 5.42 -2.91 -0.02 5.48 16 44 H 0.07 2.97 6.69 -2.39 -0.02 2.95 16 45 H 0.05 2.44 7.57 -2.39 -0.02 2.43 16 46 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -70.34 344.47 4.83 -65.50 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.94 Total: 22.63 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.10 Total: -6.04 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.02 Total: -102.24 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.17 kcal Total: -70.34 4.83 -65.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.407 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds