Wall clock time and date at job start Fri Apr 10 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 C 1.53042 * 109.45790 * 175.00103 * 3 2 1 5 5 C 1.53192 * 109.31101 * 181.38765 * 4 3 2 6 6 N 1.46925 * 108.77561 * 305.36589 * 5 4 3 7 7 C 1.34778 * 120.62807 * 233.33762 * 6 5 4 8 8 O 1.21598 * 120.00086 * 355.62027 * 7 6 5 9 9 C 1.47425 * 119.99700 * 175.62896 * 7 6 5 10 10 C 1.41288 * 126.41792 * 50.34195 * 9 7 6 11 11 N 1.30451 * 108.02238 * 179.87668 * 10 9 7 12 12 N 1.39925 * 108.89818 * 0.38796 * 11 10 9 13 13 C 1.46499 * 125.75759 * 179.73196 * 12 11 10 14 14 C 1.50698 * 109.47146 * 270.02264 * 13 12 11 15 15 H 1.08001 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47061 * 89.99855 * 18 16 14 20 20 H 1.48492 * 109.47276 * 209.99943 * 18 16 14 21 21 H 1.48497 * 109.47095 * 330.00473 * 18 16 14 22 22 C 1.34258 * 108.49196 * 359.74817 * 12 11 10 23 23 C 1.50700 * 126.29289 * 180.02562 * 22 12 11 24 24 C 1.46924 * 118.73802 * 53.60931 * 6 5 4 25 25 C 1.53033 * 109.46099 * 295.07180 * 3 2 1 26 26 H 1.08996 * 109.46996 * 59.99827 * 1 2 3 27 27 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99492 * 1 2 3 29 29 H 1.09007 * 109.46528 * 240.00203 * 2 1 3 30 30 H 1.08996 * 109.46996 * 120.00173 * 2 1 3 31 31 H 1.09000 * 109.45633 * 55.03224 * 3 2 1 32 32 H 1.08995 * 109.49749 * 61.43640 * 4 3 2 33 33 H 1.08999 * 109.52489 * 301.35680 * 4 3 2 34 34 H 1.08996 * 109.58304 * 185.57961 * 5 4 3 35 35 H 1.08999 * 109.70214 * 65.22440 * 5 4 3 36 36 H 1.08005 * 125.98822 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.47049 * 30.01622 * 13 12 11 38 38 H 1.08999 * 109.47813 * 150.01590 * 13 12 11 39 39 H 0.96996 * 119.99985 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.46833 * 269.97535 * 23 22 12 41 41 H 1.09002 * 109.47396 * 29.96877 * 23 22 12 42 42 H 1.08993 * 109.47614 * 149.97625 * 23 22 12 43 43 H 1.08999 * 109.58671 * 66.18014 * 24 6 5 44 44 H 1.08998 * 109.58559 * 186.60850 * 24 6 5 45 45 H 1.09006 * 109.49471 * 298.56194 * 25 3 2 46 46 H 1.09003 * 109.50345 * 58.66188 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5653 1.4440 0.1257 5 6 4.0694 2.8902 0.1603 6 7 3.5608 3.5967 -1.0233 7 6 4.4032 4.2513 -1.8469 8 8 5.5850 4.3287 -1.5715 9 6 3.8916 4.8738 -3.0815 10 6 2.7812 5.7411 -3.1858 11 7 2.6500 6.0800 -4.4386 12 7 3.6498 5.4480 -5.1862 13 6 3.8409 5.5672 -6.6337 14 6 3.0485 4.4944 -7.3351 15 1 2.4615 3.7935 -6.7601 16 6 3.0727 4.4075 -8.7110 17 7 3.7871 5.2613 -9.4112 18 14 2.0910 3.0771 -9.5803 19 1 0.7293 3.5857 -9.8845 20 1 2.7741 2.7045 -10.8450 21 1 1.9890 1.8838 -8.7025 22 6 4.4043 4.7135 -4.3532 23 6 5.5928 3.8697 -4.7360 24 6 2.1158 3.5810 -1.2886 25 6 1.6336 2.1270 -1.3069 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6058 1.9812 0.8422 32 1 4.0013 0.9271 -0.7291 33 1 3.8555 0.9355 1.0451 34 1 5.1593 2.8975 0.1499 35 1 3.7092 3.3834 1.0631 36 1 2.1523 6.0677 -2.3707 37 1 3.4986 6.5474 -6.9659 38 1 4.8984 5.4519 -6.8715 39 1 3.8044 5.2000 -10.3791 40 1 5.2592 2.8602 -4.9767 41 1 6.0840 4.3070 -5.6053 42 1 6.2946 3.8314 -3.9030 43 1 1.5942 4.1291 -0.5040 44 1 1.9167 4.0441 -2.2551 45 1 2.0879 1.6036 -2.1483 46 1 0.5484 2.1049 -1.4071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585129156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:36 Heat of formation + Delta-G solvation = 13.402474 kcal Electronic energy + Delta-G solvation = -25667.527836 eV Core-core repulsion = 22171.708182 eV Total energy + Delta-G solvation = -3495.819654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90318 -39.56582 -37.61139 -34.63335 -33.87206 -32.17415 -31.73237 -30.80527 -30.40099 -27.50528 -26.71582 -25.45703 -23.67547 -23.23311 -22.48804 -21.07546 -20.30679 -19.52280 -18.36768 -17.03267 -16.67069 -15.90952 -15.44424 -15.14353 -14.88261 -14.54404 -14.42743 -14.19719 -14.08467 -13.77627 -13.48088 -13.27416 -12.92348 -12.54117 -12.43518 -12.31663 -12.24880 -11.97792 -11.91959 -11.74144 -11.50067 -11.32843 -11.25204 -11.13277 -10.90859 -10.80674 -10.46525 -10.39399 -10.38258 -10.21437 -9.90740 -9.40302 -8.71818 -8.55610 -8.50565 -7.82426 -6.33998 -4.41956 2.35254 2.83435 3.07909 3.16794 3.23391 3.26249 3.42931 3.62332 4.23054 4.52615 4.58864 4.61813 4.95982 5.01089 5.04252 5.10705 5.18581 5.23049 5.25636 5.34299 5.41630 5.46039 5.55264 5.65084 5.67660 5.72321 5.76419 5.84850 5.87583 5.96109 5.96638 5.98739 5.99791 6.03387 6.14353 6.31859 6.34621 6.50865 6.70112 6.82286 6.92520 7.18837 7.55960 7.63921 7.77460 7.80999 8.40914 8.55194 8.63647 9.24810 10.74192 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.004029 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.997501 B = 6947.185592 C = 8107.906884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.129 4.129 5 C 0.114 3.886 6 N -0.611 5.611 7 C 0.609 3.391 8 O -0.552 6.552 9 C -0.324 4.324 10 C 0.053 3.947 11 N -0.294 5.294 12 N -0.312 5.312 13 C 0.252 3.748 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.150 3.850 23 C -0.095 4.095 24 C 0.103 3.897 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.176 0.824 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -8.156 17.990 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.106 4.106 4 C -0.167 4.167 5 C -0.009 4.009 6 N -0.344 5.344 7 C 0.399 3.601 8 O -0.430 6.430 9 C -0.340 4.340 10 C -0.132 4.132 11 N -0.115 5.115 12 N -0.090 5.090 13 C 0.134 3.866 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.013 3.987 23 C -0.153 4.153 24 C -0.020 4.020 25 C -0.169 4.169 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.193 0.807 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.351 -7.321 16.905 18.724 hybrid contribution -0.297 -1.115 -0.012 1.153 sum -3.648 -8.435 16.893 19.231 Atomic orbital electron populations 1.21825 0.95917 1.01444 1.01977 1.21565 0.95895 0.96311 1.01893 1.21180 0.95280 0.96006 0.98104 1.21972 0.95639 0.96658 1.02430 1.21496 1.00726 0.91363 0.87277 1.47931 1.07508 1.52721 1.26268 1.17463 0.84736 0.76290 0.81590 1.90693 1.16706 1.60956 1.74666 1.19590 1.05921 1.15330 0.93125 1.23670 0.96503 0.98033 0.95032 1.77130 1.10791 1.20212 1.03371 1.49276 1.19178 1.30996 1.09529 1.19830 0.98735 1.00008 0.67991 1.21241 1.30054 1.14778 0.91673 0.91695 1.24922 0.95325 0.96440 0.96962 1.69912 1.39523 1.35945 1.07301 0.86335 0.79973 0.81391 0.78885 1.20232 1.20803 1.19662 1.21271 0.94318 0.93916 0.89151 1.20508 0.93453 0.98394 1.02919 1.21904 0.80127 0.97002 1.03014 1.22026 1.01242 0.95799 0.97858 0.92291 0.93017 0.92864 0.91977 0.92168 0.91155 0.91448 0.91037 0.89139 0.92031 0.80723 0.92551 0.92664 0.92112 0.90150 0.90326 0.89602 0.91837 0.88238 0.91329 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.08 16 3 C -0.09 -0.75 2.15 -90.58 -0.19 -0.94 16 4 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 5 C 0.11 1.28 6.42 -3.71 -0.02 1.26 16 6 N -0.61 -8.28 2.97 -174.04 -0.52 -8.80 16 7 C 0.61 10.55 7.32 -12.52 -0.09 10.46 16 8 O -0.55 -10.95 15.61 5.28 0.08 -10.87 16 9 C -0.32 -6.03 5.12 -105.07 -0.54 -6.57 16 10 C 0.05 0.96 9.66 -16.98 -0.16 0.79 16 11 N -0.29 -6.36 12.50 30.86 0.39 -5.97 16 12 N -0.31 -7.06 3.56 -57.77 -0.21 -7.27 16 13 C 0.25 6.25 5.97 -5.20 -0.03 6.22 16 14 C -0.54 -14.34 9.39 -34.44 -0.32 -14.66 16 15 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 18 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.15 3.04 7.01 -81.60 -0.57 2.47 16 23 C -0.09 -1.68 9.93 36.01 0.36 -1.33 16 24 C 0.10 1.18 5.91 -3.71 -0.02 1.16 16 25 C -0.13 -1.33 5.14 -26.61 -0.14 -1.47 16 26 H 0.06 0.46 6.53 -51.93 -0.34 0.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.15 7.03 -51.93 -0.37 0.78 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.18 2.42 7.65 -52.48 -0.40 2.02 16 37 H 0.06 1.50 8.14 -51.92 -0.42 1.07 16 38 H 0.06 1.37 7.02 -51.93 -0.36 1.01 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 41 H 0.08 1.38 7.05 -51.93 -0.37 1.02 16 42 H 0.09 1.46 7.14 -51.93 -0.37 1.09 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 1.32 4.57 -51.93 -0.24 1.08 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.68 6.50 -51.93 -0.34 0.34 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -30.18 366.00 -8.19 -38.37 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.40 Total: 1.37 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.76 Total: -4.12 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.40 Total: -45.79 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.18 -8.19 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.771 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds