Wall clock time and date at job start Fri Apr 10 2020 17:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47118 * 2 1 4 4 C 1.53042 * 109.45790 * 175.00103 * 3 2 1 5 5 C 1.53192 * 109.31101 * 181.38765 * 4 3 2 6 6 N 1.46925 * 108.77561 * 305.36589 * 5 4 3 7 7 C 1.34778 * 120.62807 * 233.33762 * 6 5 4 8 8 O 1.21598 * 120.00086 * 355.62027 * 7 6 5 9 9 C 1.47425 * 119.99700 * 175.62896 * 7 6 5 10 10 C 1.41288 * 126.41792 * 50.34195 * 9 7 6 11 11 N 1.30451 * 108.02238 * 179.87668 * 10 9 7 12 12 N 1.39925 * 108.89818 * 0.38796 * 11 10 9 13 13 C 1.46499 * 125.75759 * 179.73196 * 12 11 10 14 14 C 1.50698 * 109.47146 * 270.02264 * 13 12 11 15 15 H 1.08001 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00062 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47061 * 89.99855 * 18 16 14 20 20 H 1.48492 * 109.47276 * 209.99943 * 18 16 14 21 21 H 1.48497 * 109.47095 * 330.00473 * 18 16 14 22 22 C 1.34258 * 108.49196 * 359.74817 * 12 11 10 23 23 C 1.50700 * 126.29289 * 180.02562 * 22 12 11 24 24 C 1.46924 * 118.73802 * 53.60931 * 6 5 4 25 25 C 1.53033 * 109.46099 * 295.07180 * 3 2 1 26 26 H 1.08996 * 109.46996 * 59.99827 * 1 2 3 27 27 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99492 * 1 2 3 29 29 H 1.09007 * 109.46528 * 240.00203 * 2 1 3 30 30 H 1.08996 * 109.46996 * 120.00173 * 2 1 3 31 31 H 1.09000 * 109.45633 * 55.03224 * 3 2 1 32 32 H 1.08995 * 109.49749 * 61.43640 * 4 3 2 33 33 H 1.08999 * 109.52489 * 301.35680 * 4 3 2 34 34 H 1.08996 * 109.58304 * 185.57961 * 5 4 3 35 35 H 1.08999 * 109.70214 * 65.22440 * 5 4 3 36 36 H 1.08005 * 125.98822 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.47049 * 30.01622 * 13 12 11 38 38 H 1.08999 * 109.47813 * 150.01590 * 13 12 11 39 39 H 0.96996 * 119.99985 * 179.97438 * 17 16 14 40 40 H 1.09008 * 109.46833 * 269.97535 * 23 22 12 41 41 H 1.09002 * 109.47396 * 29.96877 * 23 22 12 42 42 H 1.08993 * 109.47614 * 149.97625 * 23 22 12 43 43 H 1.08999 * 109.58671 * 66.18014 * 24 6 5 44 44 H 1.08998 * 109.58559 * 186.60850 * 24 6 5 45 45 H 1.09006 * 109.49471 * 298.56194 * 25 3 2 46 46 H 1.09003 * 109.50345 * 58.66188 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5653 1.4440 0.1257 5 6 4.0694 2.8902 0.1603 6 7 3.5608 3.5967 -1.0233 7 6 4.4032 4.2513 -1.8469 8 8 5.5850 4.3287 -1.5715 9 6 3.8916 4.8738 -3.0815 10 6 2.7812 5.7411 -3.1858 11 7 2.6500 6.0800 -4.4386 12 7 3.6498 5.4480 -5.1862 13 6 3.8409 5.5672 -6.6337 14 6 3.0485 4.4944 -7.3351 15 1 2.4615 3.7935 -6.7601 16 6 3.0727 4.4075 -8.7110 17 7 3.7871 5.2613 -9.4112 18 14 2.0910 3.0771 -9.5803 19 1 0.7293 3.5857 -9.8845 20 1 2.7741 2.7045 -10.8450 21 1 1.9890 1.8838 -8.7025 22 6 4.4043 4.7135 -4.3532 23 6 5.5928 3.8697 -4.7360 24 6 2.1158 3.5810 -1.2886 25 6 1.6336 2.1270 -1.3069 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6058 1.9812 0.8422 32 1 4.0013 0.9271 -0.7291 33 1 3.8555 0.9355 1.0451 34 1 5.1593 2.8975 0.1499 35 1 3.7092 3.3834 1.0631 36 1 2.1523 6.0677 -2.3707 37 1 3.4986 6.5474 -6.9659 38 1 4.8984 5.4519 -6.8715 39 1 3.8044 5.2000 -10.3791 40 1 5.2592 2.8602 -4.9767 41 1 6.0840 4.3070 -5.6053 42 1 6.2946 3.8314 -3.9030 43 1 1.5942 4.1291 -0.5040 44 1 1.9167 4.0441 -2.2551 45 1 2.0879 1.6036 -2.1483 46 1 0.5484 2.1049 -1.4071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585129156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:35 Heat of formation + Delta-G solvation = -3.273318 kcal Electronic energy + Delta-G solvation = -25668.250953 eV Core-core repulsion = 22171.708182 eV Total energy + Delta-G solvation = -3496.542770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40649 -40.73200 -38.70587 -35.87281 -35.50328 -33.87970 -33.01927 -32.06347 -31.24241 -29.20527 -28.27799 -26.43521 -25.38556 -24.26300 -23.59719 -22.16817 -21.41575 -20.78140 -19.68599 -18.86658 -18.22969 -17.25096 -16.85578 -16.49416 -16.13480 -15.83234 -15.57276 -15.30580 -15.06642 -14.80395 -14.77752 -14.46388 -14.35026 -14.04162 -13.71360 -13.65791 -13.52821 -13.22523 -13.09437 -12.97141 -12.85832 -12.71301 -12.64878 -12.30111 -12.14932 -11.97000 -11.84141 -11.77408 -11.50222 -11.24008 -11.13892 -10.80317 -10.75910 -10.22239 -9.64952 -9.35110 -8.36959 -6.53631 0.80463 1.35409 1.37947 1.39832 1.49169 1.66080 1.96218 2.30308 2.34670 2.95195 3.62851 3.71539 3.82182 3.84864 3.90054 4.10164 4.15446 4.22951 4.36309 4.41281 4.48113 4.52669 4.56674 4.60965 4.70307 4.71652 4.75773 4.89294 4.90306 4.93369 4.96021 5.02006 5.09692 5.15352 5.16149 5.19320 5.28366 5.29522 5.49281 5.50013 5.60631 5.63010 5.73482 5.75382 6.06132 6.43200 6.55648 6.83840 7.17510 7.24542 8.71015 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.004029 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.997501 B = 6947.185592 C = 8107.906884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.123 4.123 5 C 0.110 3.890 6 N -0.601 5.601 7 C 0.607 3.393 8 O -0.584 6.584 9 C -0.321 4.321 10 C 0.075 3.925 11 N -0.332 5.332 12 N -0.336 5.336 13 C 0.268 3.732 14 C -0.553 4.553 15 H 0.054 0.946 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.268 1.268 22 C 0.132 3.868 23 C -0.088 4.088 24 C 0.099 3.901 25 C -0.128 4.128 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.218 0.782 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.274 0.726 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -9.579 20.166 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.099 4.099 4 C -0.161 4.161 5 C -0.011 4.011 6 N -0.333 5.333 7 C 0.396 3.604 8 O -0.465 6.465 9 C -0.337 4.337 10 C -0.111 4.111 11 N -0.152 5.152 12 N -0.114 5.114 13 C 0.149 3.851 14 C -0.591 4.591 15 H 0.073 0.927 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.192 1.192 22 C -0.003 4.003 23 C -0.146 4.146 24 C -0.023 4.023 25 C -0.166 4.166 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.234 0.766 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.909 -8.765 19.115 21.594 hybrid contribution 0.159 -0.673 -0.551 0.885 sum -4.749 -9.438 18.564 21.360 Atomic orbital electron populations 1.21820 0.95404 1.01760 1.02122 1.21536 0.96296 0.95703 1.01889 1.21157 0.94638 0.96540 0.97606 1.21943 0.96094 0.95186 1.02862 1.21714 0.99924 0.92551 0.86957 1.47998 1.08089 1.51254 1.25978 1.17301 0.84660 0.76797 0.81637 1.90678 1.17968 1.62459 1.75404 1.19851 1.05666 1.14997 0.93176 1.24310 0.95946 0.96088 0.94723 1.77079 1.11603 1.21692 1.04868 1.49016 1.20628 1.32837 1.08886 1.19355 0.97865 0.98115 0.69758 1.21386 1.30373 1.15095 0.92235 0.92738 1.25742 0.96096 0.98456 0.97491 1.70003 1.40527 1.37344 1.07770 0.85339 0.78524 0.78660 0.77904 1.19801 1.19776 1.19218 1.21773 0.94769 0.94004 0.89752 1.20506 0.92857 0.98306 1.02980 1.22080 0.78920 0.98258 1.03079 1.22002 1.01903 0.94695 0.98006 0.92912 0.92728 0.91891 0.93228 0.90983 0.89386 0.93317 0.88645 0.90867 0.89493 0.76593 0.95259 0.93385 0.91697 0.89468 0.90687 0.88878 0.88689 0.90171 0.93760 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.14 16 2 C -0.12 -1.52 5.40 30.60 0.17 -1.36 16 3 C -0.08 -1.14 2.15 -10.77 -0.02 -1.16 16 4 C -0.12 -1.97 5.36 30.67 0.16 -1.80 16 5 C 0.11 2.21 6.42 86.36 0.55 2.77 16 6 N -0.60 -15.18 2.97 -822.80 -2.45 -17.62 16 7 C 0.61 20.55 7.32 86.66 0.63 21.18 16 8 O -0.58 -23.07 15.61 -4.02 -0.06 -23.13 16 9 C -0.32 -11.88 5.12 -20.15 -0.10 -11.98 16 10 C 0.08 2.62 9.66 85.65 0.83 3.45 16 11 N -0.33 -14.51 12.50 -56.27 -0.70 -15.21 16 12 N -0.34 -15.67 3.56 -336.70 -1.20 -16.87 16 13 C 0.27 13.91 5.97 85.63 0.51 14.42 16 14 C -0.55 -30.18 9.39 25.60 0.24 -29.94 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 16 C 0.02 1.25 5.46 84.66 0.46 1.72 16 17 N -0.92 -51.40 13.29 21.45 0.28 -51.12 16 18 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.13 5.47 7.01 42.14 0.30 5.77 16 23 C -0.09 -3.23 9.93 71.24 0.71 -2.52 16 24 C 0.10 2.01 5.91 86.36 0.51 2.52 16 25 C -0.13 -2.31 5.14 30.67 0.16 -2.15 16 26 H 0.05 0.69 6.53 -2.39 -0.02 0.68 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.76 7.03 -2.39 -0.02 1.75 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.22 5.41 7.65 -2.91 -0.02 5.39 16 37 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 2.51 7.02 -2.39 -0.02 2.50 16 39 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.07 2.75 7.05 -2.39 -0.02 2.73 16 42 H 0.09 3.23 7.14 -2.39 -0.02 3.21 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.98 4.57 -2.39 -0.01 1.97 16 45 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.09 1.38 6.50 -2.39 -0.02 1.37 16 Total: -1.00 -66.55 366.00 4.66 -61.89 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.96 Total: 18.15 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.80 Total: -0.23 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -4.06 Total: -100.82 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.55 4.66 -61.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.612 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds