Wall clock time and date at job start Fri Apr 10 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99742 * 2 1 4 4 C 1.50704 * 109.46887 * 274.99499 * 3 2 1 5 5 H 1.07997 * 119.99814 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99679 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00172 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99670 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47541 * 59.99940 * 8 6 4 10 10 H 1.48500 * 109.47151 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47258 * 299.99974 * 8 6 4 12 12 S 1.65599 * 120.00381 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39905 * 336.46012 * 12 2 1 14 14 O 1.42095 * 106.40452 * 203.54281 * 12 2 1 15 15 N 1.65602 * 107.21657 * 89.99744 * 12 2 1 16 16 C 1.46498 * 119.99612 * 65.28266 * 15 12 2 17 17 C 1.53001 * 109.47089 * 164.71987 * 16 15 12 18 18 C 1.53003 * 109.47264 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47050 * 180.02562 * 18 17 16 20 20 H 1.09001 * 109.88253 * 305.41683 * 19 18 17 21 21 C 1.54324 * 109.89006 * 184.22373 * 19 18 17 22 22 C 1.55134 * 103.02327 * 218.30932 * 21 19 18 23 23 C 1.54911 * 101.65384 * 35.64966 * 22 21 19 24 24 N 1.47449 * 109.89287 * 66.45536 * 19 18 17 25 25 H 1.09006 * 109.47452 * 270.00183 * 1 2 3 26 26 H 1.09002 * 109.47670 * 30.00345 * 1 2 3 27 27 H 1.09002 * 109.47109 * 150.00174 * 1 2 3 28 28 H 1.08994 * 109.47518 * 34.99789 * 3 2 1 29 29 H 1.09000 * 109.47078 * 155.00216 * 3 2 1 30 30 H 0.96999 * 119.99728 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99942 * 244.99790 * 15 12 2 32 32 H 1.08996 * 109.46882 * 284.72133 * 16 15 12 33 33 H 1.08999 * 109.47498 * 44.72066 * 16 15 12 34 34 H 1.08996 * 109.47377 * 299.99842 * 17 16 15 35 35 H 1.09005 * 109.46627 * 60.00018 * 17 16 15 36 36 H 1.09005 * 109.46872 * 300.00206 * 18 17 16 37 37 H 1.08999 * 109.46674 * 59.99980 * 18 17 16 38 38 H 1.09001 * 110.70242 * 336.69364 * 21 19 18 39 39 H 1.08996 * 110.70719 * 99.92270 * 21 19 18 40 40 H 1.08998 * 110.99102 * 277.56683 * 22 21 19 41 41 H 1.08996 * 111.02388 * 153.75200 * 22 21 19 42 42 H 1.08991 * 110.37853 * 204.09886 * 23 22 21 43 43 H 1.08999 * 110.46458 * 81.80594 * 23 22 21 44 44 H 1.00894 * 110.99782 * 240.68758 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1937 -2.2331 6 6 3.0006 2.9503 -1.6665 7 7 3.5041 3.6465 -0.6708 8 14 3.1784 3.5666 -3.4209 9 1 1.8319 3.7730 -4.0120 10 1 3.9220 4.8520 -3.4211 11 1 3.9233 2.5643 -4.2245 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5381 -1.8593 -1.5810 16 6 3.3911 -1.0323 -2.4380 17 6 3.7607 -1.8165 -3.6987 18 6 4.6511 -0.9525 -4.5941 19 6 5.0201 -1.7365 -5.8550 20 1 5.4716 -2.6898 -5.5800 21 6 6.0034 -0.9150 -6.7151 22 6 5.5352 -1.2143 -8.1635 23 6 3.9998 -1.3108 -7.9824 24 7 3.8148 -1.9694 -6.6717 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6501 2.0044 0.5894 29 1 3.1857 1.1178 0.4343 30 1 3.9675 4.4801 -0.8474 31 1 2.1201 -2.6582 -1.9388 32 1 2.8546 -0.1258 -2.7182 33 1 4.2990 -0.7647 -1.8974 34 1 4.2972 -2.7230 -3.4185 35 1 2.8528 -2.0840 -4.2394 36 1 4.1142 -0.0462 -4.8743 37 1 5.5589 -0.6847 -4.0536 38 1 5.9138 0.1484 -6.4932 39 1 7.0271 -1.2566 -6.5626 40 1 5.9464 -2.1590 -8.5194 41 1 5.7984 -0.3981 -8.8361 42 1 3.5612 -1.9155 -8.7762 43 1 3.5538 -0.3163 -7.9736 44 1 3.6397 -2.9566 -6.7846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592392630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:46 Heat of formation + Delta-G solvation = -89.480806 kcal Electronic energy + Delta-G solvation = -24383.262806 eV Core-core repulsion = 20882.592656 eV Total energy + Delta-G solvation = -3500.670151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.90339 -36.59110 -35.75402 -35.33735 -35.11537 -32.48082 -32.39491 -30.19482 -28.50979 -27.76594 -25.04700 -24.55701 -22.32342 -21.86722 -20.85050 -19.96009 -18.61636 -17.19458 -17.03065 -16.72608 -16.43102 -15.68609 -15.29339 -14.98579 -14.60649 -14.23756 -13.69357 -13.48613 -13.31261 -13.21771 -12.95506 -12.52272 -12.28790 -12.14461 -11.91150 -11.72435 -11.63248 -11.56302 -11.35892 -11.29635 -11.16775 -11.08159 -10.99276 -10.80722 -10.65495 -10.53553 -10.45278 -10.28671 -10.02074 -9.76382 -8.74045 -8.57136 -8.48646 -7.99238 -6.10405 -4.17010 1.41514 3.26325 3.32103 3.33494 3.66496 4.05982 4.27615 4.36411 4.52677 4.57944 4.86157 5.08116 5.16780 5.23058 5.25845 5.30815 5.44836 5.46770 5.58143 5.64101 5.73047 5.73597 5.78006 5.90439 6.06398 6.12598 6.13739 6.19873 6.24023 6.37515 6.48878 6.58555 6.68227 6.80769 6.84417 7.29642 7.34535 7.44483 7.53738 7.72449 7.87801 8.16319 8.86836 9.48225 10.97387 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.005313 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.927211 B = 5268.649843 C = 6902.063450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.998 5.998 3 C 0.243 3.757 4 C -0.542 4.542 5 H 0.068 0.932 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.889 3.111 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.271 1.271 12 S 2.790 3.210 13 O -1.006 7.006 14 O -0.982 6.982 15 N -1.129 6.129 16 C 0.109 3.891 17 C -0.116 4.116 18 C -0.105 4.105 19 C 0.079 3.921 20 H 0.060 0.940 21 C -0.139 4.139 22 C -0.155 4.155 23 C 0.048 3.952 24 N -0.678 5.678 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -10.111 -12.168 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.840 5.840 3 C 0.121 3.879 4 C -0.581 4.581 5 H 0.086 0.914 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.196 1.196 12 S 2.797 3.203 13 O -0.990 6.990 14 O -0.965 6.965 15 N -0.888 5.888 16 C -0.016 4.016 17 C -0.155 4.155 18 C -0.144 4.144 19 C -0.031 4.031 20 H 0.078 0.922 21 C -0.177 4.177 22 C -0.194 4.194 23 C -0.082 4.082 24 N -0.307 5.307 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.113 -9.702 -10.948 14.671 hybrid contribution 0.469 -0.173 -1.978 2.040 sum 1.582 -9.876 -12.926 16.344 Atomic orbital electron populations 1.21189 0.80132 1.02042 1.00501 1.57599 1.14174 1.23426 1.88838 1.19219 0.92235 0.79016 0.97478 1.21578 1.36682 1.06867 0.92962 0.91438 1.24935 0.95207 0.96471 0.97083 1.69926 1.36571 1.15145 1.30972 0.86706 0.78376 0.78347 0.84943 1.20239 1.21337 1.19585 1.01554 0.73246 0.72408 0.73054 1.93534 1.67214 1.60894 1.77391 1.93564 1.40957 1.85058 1.76930 1.55913 1.63366 1.37266 1.32263 1.21645 0.94811 0.94283 0.90884 1.21683 1.00332 0.98196 0.95335 1.21564 0.99784 0.98998 0.94013 1.22214 0.88691 0.98055 0.94134 0.92220 1.22861 0.99056 1.01527 0.94285 1.23140 0.97243 1.01690 0.97336 1.22867 0.94369 1.00511 0.90413 1.61579 1.38033 1.17108 1.13954 0.93890 0.90896 0.92906 0.94512 0.93069 0.92545 0.76374 0.88850 0.90803 0.92678 0.90916 0.90886 0.91583 0.90517 0.91132 0.91744 0.90901 0.91795 0.90494 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.90 10.31 59.84 0.62 2.52 16 2 N -1.00 -20.90 3.23 -123.05 -0.40 -21.29 16 3 C 0.24 6.01 5.41 -5.19 -0.03 5.98 16 4 C -0.54 -13.75 8.07 -34.44 -0.28 -14.03 16 5 H 0.07 1.64 5.83 -52.49 -0.31 1.33 16 6 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 8 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 S 2.79 56.47 6.11 -107.50 -0.66 55.81 16 13 O -1.01 -21.07 17.21 -57.17 -0.98 -22.06 16 14 O -0.98 -23.25 16.15 -57.17 -0.92 -24.17 16 15 N -1.13 -18.96 6.05 -10.61 -0.06 -19.03 16 16 C 0.11 1.90 5.90 -4.04 -0.02 1.88 16 17 C -0.12 -1.61 5.26 -26.73 -0.14 -1.75 16 18 C -0.10 -1.43 4.76 -26.73 -0.13 -1.56 16 19 C 0.08 0.87 3.34 -66.72 -0.22 0.65 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.14 -1.42 6.47 -24.91 -0.16 -1.58 16 22 C -0.16 -1.35 7.08 -24.59 -0.17 -1.53 16 23 C 0.05 0.45 7.57 -2.30 -0.02 0.43 16 24 N -0.68 -7.20 6.56 -103.81 -0.68 -7.88 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 28 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.40 5.60 8.65 -34.47 -0.30 5.30 16 32 H 0.09 1.82 4.86 -51.93 -0.25 1.56 16 33 H 0.07 1.42 7.74 -51.93 -0.40 1.02 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.34 2.99 8.91 -39.29 -0.35 2.64 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -31.20 361.36 -10.59 -41.79 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.39 Total: 7.86 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.65 Total: -7.32 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -0.41 Total: -72.48 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.91 Total: -46.23 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 56.47 SS G_CDS: -0.66 Total: 55.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.20 -10.59 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592392630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.694 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds