Wall clock time and date at job start Fri Apr 10 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99742 * 2 1 4 4 C 1.50704 * 109.46887 * 274.99499 * 3 2 1 5 5 H 1.07997 * 119.99814 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99679 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00172 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99670 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47541 * 59.99940 * 8 6 4 10 10 H 1.48500 * 109.47151 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47258 * 299.99974 * 8 6 4 12 12 S 1.65599 * 120.00381 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39905 * 336.46012 * 12 2 1 14 14 O 1.42095 * 106.40452 * 203.54281 * 12 2 1 15 15 N 1.65602 * 107.21657 * 89.99744 * 12 2 1 16 16 C 1.46498 * 119.99612 * 65.28266 * 15 12 2 17 17 C 1.53001 * 109.47089 * 164.71987 * 16 15 12 18 18 C 1.53003 * 109.47264 * 179.97438 * 17 16 15 19 19 C 1.52991 * 109.47050 * 180.02562 * 18 17 16 20 20 H 1.09001 * 109.88253 * 305.41683 * 19 18 17 21 21 C 1.54324 * 109.89006 * 184.22373 * 19 18 17 22 22 C 1.55134 * 103.02327 * 218.30932 * 21 19 18 23 23 C 1.54911 * 101.65384 * 35.64966 * 22 21 19 24 24 N 1.47449 * 109.89287 * 66.45536 * 19 18 17 25 25 H 1.09006 * 109.47452 * 270.00183 * 1 2 3 26 26 H 1.09002 * 109.47670 * 30.00345 * 1 2 3 27 27 H 1.09002 * 109.47109 * 150.00174 * 1 2 3 28 28 H 1.08994 * 109.47518 * 34.99789 * 3 2 1 29 29 H 1.09000 * 109.47078 * 155.00216 * 3 2 1 30 30 H 0.96999 * 119.99728 * 180.02562 * 7 6 4 31 31 H 0.97001 * 119.99942 * 244.99790 * 15 12 2 32 32 H 1.08996 * 109.46882 * 284.72133 * 16 15 12 33 33 H 1.08999 * 109.47498 * 44.72066 * 16 15 12 34 34 H 1.08996 * 109.47377 * 299.99842 * 17 16 15 35 35 H 1.09005 * 109.46627 * 60.00018 * 17 16 15 36 36 H 1.09005 * 109.46872 * 300.00206 * 18 17 16 37 37 H 1.08999 * 109.46674 * 59.99980 * 18 17 16 38 38 H 1.09001 * 110.70242 * 336.69364 * 21 19 18 39 39 H 1.08996 * 110.70719 * 99.92270 * 21 19 18 40 40 H 1.08998 * 110.99102 * 277.56683 * 22 21 19 41 41 H 1.08996 * 111.02388 * 153.75200 * 22 21 19 42 42 H 1.08991 * 110.37853 * 204.09886 * 23 22 21 43 43 H 1.08999 * 110.46458 * 81.80594 * 23 22 21 44 44 H 1.00894 * 110.99782 * 240.68758 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1937 -2.2331 6 6 3.0006 2.9503 -1.6665 7 7 3.5041 3.6465 -0.6708 8 14 3.1784 3.5666 -3.4209 9 1 1.8319 3.7730 -4.0120 10 1 3.9220 4.8520 -3.4211 11 1 3.9233 2.5643 -4.2245 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5381 -1.8593 -1.5810 16 6 3.3911 -1.0323 -2.4380 17 6 3.7607 -1.8165 -3.6987 18 6 4.6511 -0.9525 -4.5941 19 6 5.0201 -1.7365 -5.8550 20 1 5.4716 -2.6898 -5.5800 21 6 6.0034 -0.9150 -6.7151 22 6 5.5352 -1.2143 -8.1635 23 6 3.9998 -1.3108 -7.9824 24 7 3.8148 -1.9694 -6.6717 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6501 2.0044 0.5894 29 1 3.1857 1.1178 0.4343 30 1 3.9675 4.4801 -0.8474 31 1 2.1201 -2.6582 -1.9388 32 1 2.8546 -0.1258 -2.7182 33 1 4.2990 -0.7647 -1.8974 34 1 4.2972 -2.7230 -3.4185 35 1 2.8528 -2.0840 -4.2394 36 1 4.1142 -0.0462 -4.8743 37 1 5.5589 -0.6847 -4.0536 38 1 5.9138 0.1484 -6.4932 39 1 7.0271 -1.2566 -6.5626 40 1 5.9464 -2.1590 -8.5194 41 1 5.7984 -0.3981 -8.8361 42 1 3.5612 -1.9155 -8.7762 43 1 3.5538 -0.3163 -7.9736 44 1 3.6397 -2.9566 -6.7846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592392630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:45 Heat of formation + Delta-G solvation = -113.633560 kcal Electronic energy + Delta-G solvation = -24384.310149 eV Core-core repulsion = 20882.592656 eV Total energy + Delta-G solvation = -3501.717493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72550 -38.30517 -37.29559 -36.88904 -36.86691 -34.45088 -33.54526 -30.95753 -29.69926 -29.45956 -26.75285 -25.69526 -24.20310 -22.93320 -21.74751 -20.91203 -20.19520 -18.79507 -18.58105 -18.16875 -17.90029 -17.22006 -16.66934 -16.32988 -15.91865 -15.73773 -15.09233 -14.93401 -14.49478 -14.30183 -14.05835 -13.97091 -13.92105 -13.72755 -13.36578 -13.19059 -12.99393 -12.96643 -12.86398 -12.83642 -12.61396 -12.45260 -12.35885 -12.09657 -11.97637 -11.85580 -11.65578 -11.63354 -11.50992 -11.34985 -10.53989 -10.24116 -9.75096 -9.36416 -8.13947 -6.26766 -0.23525 1.45888 1.46820 1.53800 2.05650 2.44808 2.66387 3.18160 3.29755 3.47684 3.74240 3.80547 4.08818 4.15047 4.15655 4.24357 4.35700 4.45404 4.56488 4.68672 4.73175 4.75298 4.81169 4.89088 4.91273 4.99413 5.03023 5.07261 5.08939 5.12753 5.22863 5.30684 5.35978 5.46688 5.52661 5.54864 5.80120 5.89642 6.01420 6.12864 6.31674 6.61405 6.84485 7.42561 8.94181 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.005313 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.927211 B = 5268.649843 C = 6902.063450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.004 6.004 3 C 0.256 3.744 4 C -0.538 4.538 5 H 0.080 0.920 6 C 0.016 3.984 7 N -0.928 5.928 8 Si 0.949 3.051 9 H -0.269 1.269 10 H -0.291 1.291 11 H -0.258 1.258 12 S 2.804 3.196 13 O -1.009 7.009 14 O -1.019 7.019 15 N -1.112 6.112 16 C 0.111 3.889 17 C -0.104 4.104 18 C -0.106 4.106 19 C 0.083 3.917 20 H 0.075 0.925 21 C -0.143 4.143 22 C -0.147 4.147 23 C 0.046 3.954 24 N -0.691 5.691 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.264 0.736 31 H 0.422 0.578 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -11.819 -14.595 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.846 5.846 3 C 0.132 3.868 4 C -0.577 4.577 5 H 0.098 0.902 6 C -0.184 4.184 7 N -0.568 5.568 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.217 1.217 11 H -0.182 1.182 12 S 2.811 3.189 13 O -0.994 6.994 14 O -1.003 7.003 15 N -0.875 5.875 16 C -0.015 4.015 17 C -0.143 4.143 18 C -0.145 4.145 19 C -0.027 4.027 20 H 0.093 0.907 21 C -0.181 4.181 22 C -0.186 4.186 23 C -0.083 4.083 24 N -0.321 5.321 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.258 0.742 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.567 -11.453 -13.382 17.623 hybrid contribution 0.579 0.311 -1.176 1.348 sum 1.146 -11.142 -14.559 18.369 Atomic orbital electron populations 1.21442 0.78003 1.03372 1.01832 1.57511 1.15650 1.22108 1.89298 1.18796 0.90852 0.80183 0.96942 1.21848 1.35804 1.06674 0.93409 0.90245 1.25734 0.95022 0.96841 1.00802 1.70062 1.37883 1.15699 1.33174 0.85739 0.78649 0.77766 0.80454 1.19409 1.21667 1.18214 1.00980 0.72335 0.71970 0.73565 1.93522 1.67098 1.60713 1.78021 1.93520 1.42967 1.85534 1.78240 1.55517 1.63190 1.37777 1.30968 1.21578 0.93459 0.94400 0.92071 1.21606 1.01082 0.98198 0.93407 1.21563 0.99078 0.98451 0.95391 1.22120 0.89162 0.98329 0.93106 0.90671 1.22875 0.99598 1.00325 0.95339 1.23108 0.96542 1.02639 0.96330 1.22874 0.95004 0.99975 0.90483 1.61462 1.37893 1.18120 1.14598 0.92653 0.90751 0.90379 0.96248 0.96335 0.92658 0.74241 0.90862 0.93163 0.90834 0.89797 0.93389 0.92254 0.92358 0.90031 0.90274 0.90363 0.89847 0.92168 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.31 127.77 1.32 4.66 16 2 N -1.00 -41.92 3.23 -543.22 -1.75 -43.67 16 3 C 0.26 13.01 5.41 85.63 0.46 13.47 16 4 C -0.54 -27.58 8.07 25.60 0.21 -27.38 16 5 H 0.08 3.82 5.83 -2.91 -0.02 3.80 16 6 C 0.02 0.83 5.46 84.66 0.46 1.30 16 7 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 8 Si 0.95 41.51 29.54 68.60 2.03 43.53 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 S 2.80 112.24 6.11 -56.49 -0.35 111.89 16 13 O -1.01 -40.74 17.21 -128.00 -2.20 -42.94 16 14 O -1.02 -49.17 16.15 -128.00 -2.07 -51.23 16 15 N -1.11 -35.82 6.05 -187.50 -1.14 -36.95 16 16 C 0.11 3.79 5.90 86.38 0.51 4.30 16 17 C -0.10 -2.68 5.26 30.60 0.16 -2.52 16 18 C -0.11 -2.77 4.76 30.59 0.15 -2.62 16 19 C 0.08 1.65 3.34 45.26 0.15 1.80 16 20 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.14 -2.66 6.47 31.77 0.21 -2.46 16 22 C -0.15 -2.19 7.08 31.98 0.23 -1.96 16 23 C 0.05 0.76 7.57 86.77 0.66 1.42 16 24 N -0.69 -12.93 6.56 -482.36 -3.17 -16.10 16 25 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.07 2.48 8.07 -2.39 -0.02 2.47 16 27 H 0.08 2.23 7.79 -2.39 -0.02 2.22 16 28 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 29 H 0.02 1.06 6.91 -2.39 -0.02 1.05 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.42 10.62 8.65 -96.74 -0.84 9.78 16 32 H 0.07 2.82 4.86 -2.39 -0.01 2.81 16 33 H 0.05 1.96 7.74 -2.39 -0.02 1.94 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.00 7.82 -2.38 -0.02 1.98 16 36 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.35 5.08 8.91 -89.70 -0.80 4.29 16 Total: -1.00 -67.45 361.36 -4.49 -71.94 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.64 Total: 26.86 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 4.51 Total: -9.99 kcal Atomic # 7 Polarization: -144.29 SS G_CDS: -5.77 Total: -150.05 kcal Atomic # 8 Polarization: -89.91 SS G_CDS: -4.27 Total: -94.18 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.35 Total: 111.89 kcal Total: -67.45 -4.49 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592392630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.698 kcal (2) G-P(sol) polarization free energy of solvation -67.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds