Wall clock time and date at job start Fri Apr 10 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99994 * 2 1 4 4 O 1.20830 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99807 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46858 * 180.02562 * 5 3 2 7 7 C 1.37097 * 120.00256 * 264.07463 * 6 5 3 8 8 H 1.07993 * 120.00525 * 196.86996 * 7 6 5 9 9 C 1.38957 * 119.99523 * 16.86498 * 7 6 5 10 10 N 1.31410 * 120.00261 * 20.54964 * 9 7 6 11 11 Si 1.86802 * 119.99633 * 200.54785 * 9 7 6 12 12 H 1.48493 * 109.47400 * 60.00304 * 11 9 7 13 13 H 1.48500 * 109.46926 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47026 * 299.99885 * 11 9 7 15 15 C 1.34782 * 120.00090 * 84.07735 * 6 5 3 16 16 O 1.21290 * 120.00110 * 359.97438 * 15 6 5 17 17 C 1.50704 * 119.99893 * 180.02562 * 15 6 5 18 18 H 1.08999 * 109.34833 * 320.28099 * 17 15 6 19 19 C 1.54060 * 109.35560 * 79.99781 * 17 15 6 20 20 C 1.55600 * 104.29474 * 165.37936 * 19 17 15 21 21 S 1.83449 * 100.72348 * 322.08188 * 20 19 17 22 22 O 1.42100 * 111.24612 * 270.72073 * 21 20 19 23 23 O 1.42103 * 111.35834 * 131.51385 * 21 20 19 24 24 N 1.47066 * 109.35409 * 200.63575 * 17 15 6 25 25 H 1.09005 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47100 * 299.99832 * 1 2 3 27 27 H 1.08995 * 109.47194 * 59.99661 * 1 2 3 28 28 H 1.08997 * 109.47089 * 60.00426 * 5 3 2 29 29 H 1.09001 * 109.47603 * 299.99804 * 5 3 2 30 30 H 0.96992 * 119.99961 * 179.97438 * 10 9 7 31 31 H 1.09007 * 110.46907 * 284.08134 * 19 17 15 32 32 H 1.08999 * 110.47267 * 46.67501 * 19 17 15 33 33 H 1.09009 * 111.16860 * 79.94701 * 20 19 17 34 34 H 1.09005 * 111.17200 * 204.20820 * 20 19 17 35 35 H 0.96993 * 126.29765 * 30.75604 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2931 3.3031 -1.1805 8 1 4.8502 4.2282 -1.1722 9 6 3.8918 2.7445 -2.3879 10 7 2.9030 1.8794 -2.4154 11 14 4.7580 3.2236 -3.9722 12 1 6.1974 2.8721 -3.8752 13 1 4.1455 2.4939 -5.1113 14 1 4.6190 4.6860 -4.1896 15 6 4.0577 3.3593 1.1616 16 8 3.7818 2.8080 2.2061 17 6 4.4844 4.8047 1.1622 18 1 5.2914 4.9433 0.4427 19 6 3.2882 5.6904 0.7648 20 6 3.7258 7.1291 1.1646 21 16 4.6215 6.7909 2.7294 22 8 3.7429 6.8340 3.8454 23 8 5.8874 7.4362 2.7510 24 7 4.9613 5.1715 2.5042 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9556 0.7809 -0.8908 29 1 3.9564 0.7805 0.8891 30 1 2.6228 1.4898 -3.2582 31 1 3.1099 5.6309 -0.3090 32 1 2.3958 5.3962 1.3171 33 1 4.3904 7.5608 0.4161 34 1 2.8611 7.7701 1.3366 35 1 5.3932 4.5813 3.1413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593477906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:48 Heat of formation + Delta-G solvation = -163.682056 kcal Electronic energy + Delta-G solvation = -24579.596390 eV Core-core repulsion = 20706.323780 eV Total energy + Delta-G solvation = -3873.272609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.72794 -38.77608 -36.81608 -36.23869 -35.66428 -35.28144 -34.76191 -31.81641 -31.39079 -29.00639 -26.92320 -25.86757 -24.61663 -22.26751 -20.44862 -19.51424 -19.24229 -18.00605 -17.18168 -16.70213 -16.64273 -15.96577 -15.58376 -15.38527 -15.27530 -14.77771 -14.55238 -14.23476 -13.86107 -13.47150 -13.06489 -12.95185 -12.62087 -12.47036 -11.94272 -11.84944 -11.81379 -11.76092 -11.54052 -11.42999 -11.34441 -11.19182 -10.91227 -10.71216 -10.60810 -10.35520 -9.90527 -9.71821 -9.37053 -9.14431 -8.61092 -8.15550 -6.68598 -4.19983 0.45392 2.81773 2.95659 3.08645 3.09284 3.28503 3.57474 3.73815 3.86579 3.93045 4.22667 4.49152 4.53670 4.70759 4.93809 5.16670 5.36339 5.61014 5.63972 5.71378 5.74000 5.84395 5.87443 6.10517 6.17459 6.28231 6.35355 6.51461 7.12845 7.30219 7.42487 7.46849 8.01644 8.77812 8.98042 9.14031 9.53469 10.37891 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.005930 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.244305 B = 4720.466323 C = 5949.926857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.486 3.514 4 O -0.500 6.500 5 C 0.155 3.845 6 N -0.421 5.421 7 C -0.348 4.348 8 H 0.107 0.893 9 C 0.043 3.957 10 N -0.863 5.863 11 Si 0.925 3.075 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.469 3.531 16 O -0.586 6.586 17 C 0.111 3.889 18 H 0.104 0.896 19 C -0.108 4.108 20 C -0.593 4.593 21 S 2.576 3.424 22 O -0.965 6.965 23 O -0.968 6.968 24 N -1.082 6.082 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.276 0.724 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 2.475 -0.210 2.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.384 6.384 5 C 0.030 3.970 6 N -0.140 5.140 7 C -0.475 4.475 8 H 0.125 0.875 9 C -0.164 4.164 10 N -0.499 5.499 11 Si 0.751 3.249 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.255 3.745 16 O -0.470 6.470 17 C 0.000 4.000 18 H 0.121 0.879 19 C -0.148 4.148 20 C -0.724 4.724 21 S 2.671 3.329 22 O -0.954 6.954 23 O -0.957 6.957 24 N -0.850 5.850 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.289 3.026 0.902 3.171 hybrid contribution -0.145 -0.287 -1.520 1.554 sum 0.144 2.739 -0.618 2.811 Atomic orbital electron populations 1.22945 0.78541 1.01898 1.01680 1.86451 1.21798 1.35385 1.85631 1.23874 0.92208 0.80631 0.70616 1.90505 1.66493 1.36360 1.45090 1.20505 0.87399 0.85295 1.03826 1.43393 1.56505 1.08102 1.05993 1.19611 1.35209 1.10404 0.82235 0.87540 1.25231 0.94612 0.96794 0.99730 1.69816 1.22312 1.29455 1.28367 0.86019 0.79629 0.78956 0.80290 1.19566 1.20833 1.19645 1.19796 0.83128 0.87338 0.84197 1.90579 1.54980 1.69457 1.32007 1.21426 0.97537 0.96244 0.84786 0.87889 1.22520 0.97751 0.87341 1.07198 1.30823 1.14617 1.05652 1.21352 1.06064 0.75723 0.74312 0.76822 1.93603 1.67501 1.85668 1.48653 1.93599 1.40447 1.74750 1.86907 1.54832 1.76539 1.29605 1.24014 0.89561 0.93080 0.92575 0.85687 0.89873 0.91351 0.85513 0.88618 0.83998 0.84199 0.72510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.79 16 2 O -0.38 -7.70 10.57 -39.25 -0.41 -8.12 16 3 C 0.49 11.31 6.13 36.00 0.22 11.53 16 4 O -0.50 -12.93 15.78 -18.75 -0.30 -13.23 16 5 C 0.16 3.45 5.14 -5.19 -0.03 3.42 16 6 N -0.42 -9.49 2.18 -116.09 -0.25 -9.75 16 7 C -0.35 -7.61 8.47 -14.93 -0.13 -7.74 16 8 H 0.11 2.09 6.02 -52.49 -0.32 1.78 16 9 C 0.04 0.94 4.90 -17.47 -0.09 0.86 16 10 N -0.86 -20.32 9.23 55.50 0.51 -19.81 16 11 Si 0.93 17.34 29.60 -169.99 -5.03 12.31 16 12 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 14 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 15 C 0.47 10.30 6.65 -10.98 -0.07 10.23 16 16 O -0.59 -14.36 16.10 5.55 0.09 -14.27 16 17 C 0.11 1.95 2.62 -68.22 -0.18 1.78 16 18 H 0.10 1.63 6.53 -51.93 -0.34 1.29 16 19 C -0.11 -1.70 5.90 -24.79 -0.15 -1.84 16 20 C -0.59 -6.97 7.51 38.54 0.29 -6.68 16 21 S 2.58 38.43 6.49 -107.50 -0.70 37.74 16 22 O -0.97 -17.67 18.13 -57.43 -1.04 -18.71 16 23 O -0.97 -16.41 18.14 -57.43 -1.04 -17.45 16 24 N -1.08 -17.80 6.31 -5.08 -0.03 -17.83 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 27 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 28 H 0.13 2.74 6.36 -51.93 -0.33 2.41 16 29 H 0.08 1.74 7.61 -51.93 -0.39 1.34 16 30 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 31 H 0.13 1.99 7.61 -51.92 -0.40 1.60 16 32 H 0.10 1.64 8.10 -51.93 -0.42 1.22 16 33 H 0.14 1.32 8.14 -51.92 -0.42 0.90 16 34 H 0.14 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.43 6.96 8.76 -40.34 -0.35 6.60 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -33.42 311.71 -6.37 -39.79 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -3.80 Total: 11.26 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 0.94 Total: 13.35 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.23 Total: -47.38 kcal Atomic # 8 Polarization: -69.07 SS G_CDS: -2.70 Total: -71.77 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.70 Total: 37.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.42 -6.37 -39.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.891 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds