Wall clock time and date at job start Fri Apr 10 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99994 * 2 1 4 4 O 1.20830 * 119.99823 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99807 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46858 * 180.02562 * 5 3 2 7 7 C 1.37097 * 120.00256 * 264.07463 * 6 5 3 8 8 H 1.07993 * 120.00525 * 196.86996 * 7 6 5 9 9 C 1.38957 * 119.99523 * 16.86498 * 7 6 5 10 10 N 1.31410 * 120.00261 * 20.54964 * 9 7 6 11 11 Si 1.86802 * 119.99633 * 200.54785 * 9 7 6 12 12 H 1.48493 * 109.47400 * 60.00304 * 11 9 7 13 13 H 1.48500 * 109.46926 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47026 * 299.99885 * 11 9 7 15 15 C 1.34782 * 120.00090 * 84.07735 * 6 5 3 16 16 O 1.21290 * 120.00110 * 359.97438 * 15 6 5 17 17 C 1.50704 * 119.99893 * 180.02562 * 15 6 5 18 18 H 1.08999 * 109.34833 * 320.28099 * 17 15 6 19 19 C 1.54060 * 109.35560 * 79.99781 * 17 15 6 20 20 C 1.55600 * 104.29474 * 165.37936 * 19 17 15 21 21 S 1.83449 * 100.72348 * 322.08188 * 20 19 17 22 22 O 1.42100 * 111.24612 * 270.72073 * 21 20 19 23 23 O 1.42103 * 111.35834 * 131.51385 * 21 20 19 24 24 N 1.47066 * 109.35409 * 200.63575 * 17 15 6 25 25 H 1.09005 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47100 * 299.99832 * 1 2 3 27 27 H 1.08995 * 109.47194 * 59.99661 * 1 2 3 28 28 H 1.08997 * 109.47089 * 60.00426 * 5 3 2 29 29 H 1.09001 * 109.47603 * 299.99804 * 5 3 2 30 30 H 0.96992 * 119.99961 * 179.97438 * 10 9 7 31 31 H 1.09007 * 110.46907 * 284.08134 * 19 17 15 32 32 H 1.08999 * 110.47267 * 46.67501 * 19 17 15 33 33 H 1.09009 * 111.16860 * 79.94701 * 20 19 17 34 34 H 1.09005 * 111.17200 * 204.20820 * 20 19 17 35 35 H 0.96993 * 126.29765 * 30.75604 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2931 3.3031 -1.1805 8 1 4.8502 4.2282 -1.1722 9 6 3.8918 2.7445 -2.3879 10 7 2.9030 1.8794 -2.4154 11 14 4.7580 3.2236 -3.9722 12 1 6.1974 2.8721 -3.8752 13 1 4.1455 2.4939 -5.1113 14 1 4.6190 4.6860 -4.1896 15 6 4.0577 3.3593 1.1616 16 8 3.7818 2.8080 2.2061 17 6 4.4844 4.8047 1.1622 18 1 5.2914 4.9433 0.4427 19 6 3.2882 5.6904 0.7648 20 6 3.7258 7.1291 1.1646 21 16 4.6215 6.7909 2.7294 22 8 3.7429 6.8340 3.8454 23 8 5.8874 7.4362 2.7510 24 7 4.9613 5.1715 2.5042 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9556 0.7809 -0.8908 29 1 3.9564 0.7805 0.8891 30 1 2.6228 1.4898 -3.2582 31 1 3.1099 5.6309 -0.3090 32 1 2.3958 5.3962 1.3171 33 1 4.3904 7.5608 0.4161 34 1 2.8611 7.7701 1.3366 35 1 5.3932 4.5813 3.1413 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593477906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:47 Heat of formation + Delta-G solvation = -190.418621 kcal Electronic energy + Delta-G solvation = -24580.755774 eV Core-core repulsion = 20706.323780 eV Total energy + Delta-G solvation = -3874.431994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43192 -40.42876 -38.09851 -37.70939 -37.05245 -36.83965 -36.52456 -33.50643 -32.61271 -30.64534 -28.31751 -27.40706 -26.17771 -23.57979 -22.11244 -21.13273 -20.52508 -19.46408 -18.67852 -18.39575 -18.09922 -17.41761 -17.22949 -16.89388 -16.69495 -16.26038 -16.07895 -15.63960 -15.40559 -14.86519 -14.48619 -14.23928 -14.12467 -14.01182 -13.42436 -13.25552 -13.22246 -13.07032 -13.06188 -12.87972 -12.83743 -12.49057 -12.44524 -12.33034 -12.11405 -11.56328 -11.53995 -11.44757 -10.92019 -10.80233 -10.17779 -9.89632 -8.35825 -5.92387 -0.70526 1.43870 1.55856 1.60145 1.65874 1.68744 1.79568 2.23080 2.35631 2.62264 2.78351 3.09916 3.17336 3.43821 3.61456 3.95720 4.12706 4.27270 4.35435 4.37401 4.41436 4.44806 4.58894 4.69125 4.70743 4.76674 4.91582 5.06954 5.47713 5.61948 5.71899 6.13947 6.32226 7.08067 7.21318 7.44940 7.84504 8.70670 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.005930 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.244305 B = 4720.466323 C = 5949.926857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.485 3.515 4 O -0.533 6.533 5 C 0.151 3.849 6 N -0.429 5.429 7 C -0.358 4.358 8 H 0.130 0.870 9 C 0.003 3.997 10 N -0.892 5.892 11 Si 0.990 3.010 12 H -0.266 1.266 13 H -0.295 1.295 14 H -0.260 1.260 15 C 0.455 3.545 16 O -0.622 6.622 17 C 0.112 3.888 18 H 0.127 0.873 19 C -0.112 4.112 20 C -0.554 4.554 21 S 2.581 3.419 22 O -1.004 7.004 23 O -0.988 6.988 24 N -1.088 6.088 25 H 0.132 0.868 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 3.773 -1.729 4.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.328 3.672 4 O -0.421 6.421 5 C 0.025 3.975 6 N -0.147 5.147 7 C -0.484 4.484 8 H 0.148 0.852 9 C -0.200 4.200 10 N -0.530 5.530 11 Si 0.814 3.186 12 H -0.190 1.190 13 H -0.221 1.221 14 H -0.185 1.185 15 C 0.244 3.756 16 O -0.509 6.509 17 C 0.000 4.000 18 H 0.144 0.856 19 C -0.152 4.152 20 C -0.688 4.688 21 S 2.679 3.321 22 O -0.994 6.994 23 O -0.978 6.978 24 N -0.854 5.854 25 H 0.150 0.850 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.199 0.801 34 H 0.191 0.809 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.719 4.312 -0.587 4.411 hybrid contribution -0.359 -0.783 -1.058 1.365 sum 0.361 3.529 -1.645 3.910 Atomic orbital electron populations 1.23281 0.76188 1.04792 1.01222 1.86424 1.24110 1.33976 1.85038 1.24051 0.92624 0.80820 0.69683 1.90471 1.67268 1.37485 1.46847 1.20561 0.87152 0.85919 1.03860 1.43639 1.56274 1.08191 1.06615 1.20133 1.35112 1.11179 0.81982 0.85239 1.26037 0.94776 0.96724 1.02421 1.69929 1.23651 1.30766 1.28660 0.85011 0.78421 0.78900 0.76225 1.19042 1.22063 1.18484 1.20598 0.82522 0.89011 0.83493 1.90544 1.56516 1.70698 1.33128 1.21570 0.98939 0.93586 0.85871 0.85602 1.22500 0.96231 0.89379 1.07094 1.30709 1.15701 1.03832 1.18553 1.05869 0.75163 0.73347 0.77705 1.93556 1.68131 1.85909 1.51791 1.93570 1.41732 1.74706 1.87749 1.54917 1.76428 1.30275 1.23769 0.85006 0.93186 0.93407 0.85767 0.89454 0.91783 0.85020 0.90676 0.80113 0.80876 0.72774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -15.56 10.57 -51.38 -0.54 -16.10 16 3 C 0.49 22.96 6.13 71.23 0.44 23.39 16 4 O -0.53 -28.07 15.78 21.95 0.35 -27.72 16 5 C 0.15 6.81 5.14 85.63 0.44 7.25 16 6 N -0.43 -19.30 2.18 -639.60 -1.39 -20.69 16 7 C -0.36 -15.17 8.47 84.04 0.71 -14.46 16 8 H 0.13 4.72 6.02 -2.91 -0.02 4.70 16 9 C 0.00 0.15 4.90 84.93 0.42 0.56 16 10 N -0.89 -41.97 9.23 21.67 0.20 -41.77 16 11 Si 0.99 34.20 29.60 68.60 2.03 36.23 16 12 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 13 H -0.29 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 15 C 0.46 20.03 6.65 87.66 0.58 20.61 16 16 O -0.62 -31.17 16.10 -3.06 -0.05 -31.22 16 17 C 0.11 3.76 2.62 44.50 0.12 3.87 16 18 H 0.13 3.63 6.53 -2.39 -0.02 3.61 16 19 C -0.11 -3.26 5.90 31.85 0.19 -3.07 16 20 C -0.55 -10.77 7.51 72.88 0.55 -10.22 16 21 S 2.58 73.02 6.49 -56.49 -0.37 72.65 16 22 O -1.00 -36.39 18.13 -127.76 -2.32 -38.71 16 23 O -0.99 -31.84 18.14 -127.76 -2.32 -34.16 16 24 N -1.09 -35.07 6.31 -169.99 -1.07 -36.14 16 25 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 26 H 0.05 1.61 8.13 -2.39 -0.02 1.60 16 27 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.12 5.54 6.36 -2.39 -0.02 5.53 16 29 H 0.09 3.76 7.61 -2.39 -0.02 3.74 16 30 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 31 H 0.13 3.77 7.61 -2.38 -0.02 3.75 16 32 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 33 H 0.18 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.17 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.43 14.02 8.76 -93.02 -0.81 13.21 16 Total: -1.00 -73.16 311.71 -0.51 -73.67 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.33 Total: 33.58 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 4.64 Total: 30.38 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -2.27 Total: -98.60 kcal Atomic # 8 Polarization: -143.03 SS G_CDS: -4.88 Total: -147.91 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Atomic # 16 Polarization: 73.02 SS G_CDS: -0.37 Total: 72.65 kcal Total: -73.16 -0.51 -73.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.750 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds