Wall clock time and date at job start Fri Apr 10 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99857 * 2 1 4 4 O 1.20824 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99672 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46751 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99866 * 96.10592 * 6 5 3 8 8 H 1.08006 * 119.99915 * 161.68654 * 7 6 5 9 9 C 1.38945 * 119.99994 * 341.96023 * 7 6 5 10 10 N 1.31416 * 120.00000 * 337.45221 * 9 7 6 11 11 Si 1.86797 * 120.00038 * 157.45181 * 9 7 6 12 12 H 1.48497 * 109.47437 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47311 * 120.00072 * 11 9 7 14 14 H 1.48506 * 109.47151 * 239.99665 * 11 9 7 15 15 C 1.34780 * 119.99912 * 276.10193 * 6 5 3 16 16 O 1.21289 * 120.00401 * 0.02562 * 15 6 5 17 17 C 1.50703 * 119.99829 * 180.02562 * 15 6 5 18 18 H 1.09000 * 108.58071 * 43.45392 * 17 15 6 19 19 C 1.53201 * 108.64401 * 285.62529 * 17 15 6 20 20 C 1.55558 * 106.24009 * 211.33762 * 19 17 15 21 21 S 1.83903 * 99.63896 * 36.99056 * 20 19 17 22 22 O 1.42106 * 111.46615 * 215.91316 * 21 20 19 23 23 O 1.42095 * 111.61715 * 75.89908 * 21 20 19 24 24 N 1.46443 * 108.64700 * 161.45514 * 17 15 6 25 25 H 1.08991 * 109.47399 * 300.00402 * 1 2 3 26 26 H 1.09002 * 109.46670 * 60.00009 * 1 2 3 27 27 H 1.08997 * 109.46703 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47169 * 60.00351 * 5 3 2 29 29 H 1.08993 * 109.47698 * 299.99854 * 5 3 2 30 30 H 0.97001 * 119.99606 * 180.02562 * 10 9 7 31 31 H 1.08994 * 110.10508 * 330.53394 * 19 17 15 32 32 H 1.09001 * 110.10102 * 92.14825 * 19 17 15 33 33 H 1.08998 * 111.37098 * 279.38947 * 20 19 17 34 34 H 1.08995 * 111.41524 * 154.60997 * 20 19 17 35 35 H 0.97007 * 126.08629 * 302.86044 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2966 3.3021 1.1802 8 1 4.8739 4.2149 1.1721 9 6 3.8781 2.7554 2.3870 10 7 2.8491 1.9384 2.4166 11 14 4.7779 3.1817 3.9675 12 1 5.8924 4.1157 3.6662 13 1 3.8346 3.8270 4.9156 14 1 5.3217 1.9417 4.5774 15 6 4.0542 3.3605 -1.1612 16 8 3.7752 2.8101 -2.2054 17 6 4.4820 4.8055 -1.1620 18 1 5.3344 4.9157 -0.4917 19 6 3.3279 5.6582 -0.6254 20 6 3.4310 7.0329 -1.3461 21 16 3.9709 6.4680 -3.0109 22 8 4.8836 7.3840 -3.6002 23 8 2.8945 5.9031 -3.7466 24 7 4.9019 5.1688 -2.5171 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9564 0.7806 -0.8891 29 1 3.9558 0.7810 0.8907 30 1 2.5568 1.5571 3.2592 31 1 2.3736 5.1850 -0.8561 32 1 3.4299 5.7915 0.4516 33 1 4.1824 7.6704 -0.8801 34 1 2.4633 7.5324 -1.3908 35 1 5.5960 4.7332 -3.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593477907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:51 Heat of formation + Delta-G solvation = -161.087725 kcal Electronic energy + Delta-G solvation = -24737.370613 eV Core-core repulsion = 20864.210503 eV Total energy + Delta-G solvation = -3873.160111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.69941 -38.75921 -36.81869 -36.12387 -35.60473 -35.21283 -34.69928 -31.79020 -31.39391 -28.97985 -26.94261 -25.84994 -24.61972 -22.10622 -20.40643 -19.37585 -19.28723 -17.90725 -17.07161 -16.88155 -16.60702 -15.98135 -15.56531 -15.40307 -15.23254 -14.73610 -14.54308 -14.06244 -13.76599 -13.50797 -13.00538 -12.92636 -12.58024 -12.45766 -11.87676 -11.84567 -11.78856 -11.69515 -11.52346 -11.36639 -11.30620 -11.01557 -10.90698 -10.66338 -10.52598 -10.27935 -9.85675 -9.66432 -9.52798 -9.11133 -8.41694 -8.08748 -6.65106 -4.15445 0.50365 2.84449 2.95995 3.10036 3.12544 3.34227 3.62137 3.80640 3.89402 3.96540 4.27013 4.45669 4.53760 4.74567 4.95567 5.23360 5.38690 5.62754 5.67605 5.75833 5.80887 5.91304 5.92120 6.13231 6.18904 6.33272 6.42307 6.50595 7.17463 7.35789 7.43604 7.48581 8.06132 8.82766 9.03696 9.20268 9.60883 10.41708 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.006228 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.945254 B = 4494.599112 C = 5725.942094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.496 6.496 5 C 0.156 3.844 6 N -0.425 5.425 7 C -0.347 4.347 8 H 0.106 0.894 9 C 0.042 3.958 10 N -0.858 5.858 11 Si 0.921 3.079 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.278 1.278 15 C 0.458 3.542 16 O -0.580 6.580 17 C 0.113 3.887 18 H 0.102 0.898 19 C -0.104 4.104 20 C -0.590 4.590 21 S 2.568 3.432 22 O -0.972 6.972 23 O -0.948 6.948 24 N -1.076 6.076 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.273 0.727 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 3.160 0.159 3.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.324 3.676 4 O -0.380 6.380 5 C 0.030 3.970 6 N -0.145 5.145 7 C -0.474 4.474 8 H 0.124 0.876 9 C -0.164 4.164 10 N -0.495 5.495 11 Si 0.747 3.253 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.204 1.204 15 C 0.244 3.756 16 O -0.463 6.463 17 C 0.001 3.999 18 H 0.120 0.880 19 C -0.144 4.144 20 C -0.721 4.721 21 S 2.662 3.338 22 O -0.962 6.962 23 O -0.937 6.937 24 N -0.842 5.842 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.824 3.455 -1.135 3.729 hybrid contribution 0.270 -0.173 1.701 1.731 sum 1.094 3.282 0.566 3.506 Atomic orbital electron populations 1.22938 0.78564 1.01844 1.01708 1.86449 1.21799 1.35447 1.85707 1.23880 0.92219 0.80653 0.70804 1.90503 1.66435 1.36323 1.44784 1.20437 0.87429 0.85526 1.03575 1.43422 1.57008 1.07955 1.06083 1.19627 1.33968 1.11556 0.82242 0.87605 1.25219 0.94587 0.97007 0.99625 1.69878 1.20401 1.31191 1.28047 0.85970 0.79491 0.78664 0.81156 1.19076 1.20774 1.20388 1.20313 0.82979 0.88057 0.84206 1.90598 1.54235 1.69486 1.31994 1.20913 0.99273 0.95124 0.84572 0.87981 1.22261 0.99124 0.88886 1.04142 1.30768 1.12657 1.06171 1.22494 1.06398 0.75396 0.75122 0.76840 1.93573 1.62798 1.64067 1.75760 1.93663 1.56186 1.75832 1.68061 1.54540 1.53809 1.51249 1.24564 0.92574 0.93061 0.89611 0.89853 0.86187 0.91590 0.88121 0.85764 0.84155 0.84355 0.72680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -7.90 10.57 -39.26 -0.41 -8.32 16 3 C 0.48 11.51 6.12 36.01 0.22 11.73 16 4 O -0.50 -13.13 15.67 -18.75 -0.29 -13.42 16 5 C 0.16 3.52 5.14 -5.19 -0.03 3.50 16 6 N -0.43 -9.70 2.18 -116.09 -0.25 -9.96 16 7 C -0.35 -7.63 8.32 -14.93 -0.12 -7.75 16 8 H 0.11 2.09 5.76 -52.48 -0.30 1.78 16 9 C 0.04 0.94 4.83 -17.47 -0.08 0.85 16 10 N -0.86 -20.51 9.33 55.50 0.52 -19.99 16 11 Si 0.92 17.39 29.61 -169.99 -5.03 12.36 16 12 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 13 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 14 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 15 C 0.46 10.27 6.46 -10.98 -0.07 10.19 16 16 O -0.58 -14.72 16.17 5.55 0.09 -14.63 16 17 C 0.11 1.99 2.83 -69.01 -0.20 1.79 16 18 H 0.10 1.58 6.70 -51.93 -0.35 1.23 16 19 C -0.10 -1.67 5.49 -25.27 -0.14 -1.80 16 20 C -0.59 -7.10 7.66 38.52 0.29 -6.80 16 21 S 2.57 40.22 6.47 -107.50 -0.70 39.52 16 22 O -0.97 -16.66 18.14 -57.40 -1.04 -17.70 16 23 O -0.95 -19.07 18.14 -57.40 -1.04 -20.11 16 24 N -1.08 -17.55 6.11 -5.82 -0.04 -17.58 16 25 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.78 7.61 -51.93 -0.40 1.38 16 29 H 0.12 2.66 6.50 -51.93 -0.34 2.32 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 31 H 0.10 1.88 7.82 -51.93 -0.41 1.48 16 32 H 0.12 1.84 7.43 -51.93 -0.39 1.46 16 33 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.43 6.47 8.96 -40.36 -0.36 6.11 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -34.54 310.89 -6.36 -40.90 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.78 Total: 10.72 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 0.94 Total: 13.52 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.23 Total: -47.53 kcal Atomic # 8 Polarization: -71.48 SS G_CDS: -2.70 Total: -74.18 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 40.22 SS G_CDS: -0.70 Total: 39.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.54 -6.36 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.189 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds