Wall clock time and date at job start Fri Apr 10 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99857 * 2 1 4 4 O 1.20824 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99672 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46751 * 179.97438 * 5 3 2 7 7 C 1.37097 * 119.99866 * 96.10592 * 6 5 3 8 8 H 1.08006 * 119.99915 * 161.68654 * 7 6 5 9 9 C 1.38945 * 119.99994 * 341.96023 * 7 6 5 10 10 N 1.31416 * 120.00000 * 337.45221 * 9 7 6 11 11 Si 1.86797 * 120.00038 * 157.45181 * 9 7 6 12 12 H 1.48497 * 109.47437 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47311 * 120.00072 * 11 9 7 14 14 H 1.48506 * 109.47151 * 239.99665 * 11 9 7 15 15 C 1.34780 * 119.99912 * 276.10193 * 6 5 3 16 16 O 1.21289 * 120.00401 * 0.02562 * 15 6 5 17 17 C 1.50703 * 119.99829 * 180.02562 * 15 6 5 18 18 H 1.09000 * 108.58071 * 43.45392 * 17 15 6 19 19 C 1.53201 * 108.64401 * 285.62529 * 17 15 6 20 20 C 1.55558 * 106.24009 * 211.33762 * 19 17 15 21 21 S 1.83903 * 99.63896 * 36.99056 * 20 19 17 22 22 O 1.42106 * 111.46615 * 215.91316 * 21 20 19 23 23 O 1.42095 * 111.61715 * 75.89908 * 21 20 19 24 24 N 1.46443 * 108.64700 * 161.45514 * 17 15 6 25 25 H 1.08991 * 109.47399 * 300.00402 * 1 2 3 26 26 H 1.09002 * 109.46670 * 60.00009 * 1 2 3 27 27 H 1.08997 * 109.46703 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47169 * 60.00351 * 5 3 2 29 29 H 1.08993 * 109.47698 * 299.99854 * 5 3 2 30 30 H 0.97001 * 119.99606 * 180.02562 * 10 9 7 31 31 H 1.08994 * 110.10508 * 330.53394 * 19 17 15 32 32 H 1.09001 * 110.10102 * 92.14825 * 19 17 15 33 33 H 1.08998 * 111.37098 * 279.38947 * 20 19 17 34 34 H 1.08995 * 111.41524 * 154.60997 * 20 19 17 35 35 H 0.97007 * 126.08629 * 302.86044 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2966 3.3021 1.1802 8 1 4.8739 4.2149 1.1721 9 6 3.8781 2.7554 2.3870 10 7 2.8491 1.9384 2.4166 11 14 4.7779 3.1817 3.9675 12 1 5.8924 4.1157 3.6662 13 1 3.8346 3.8270 4.9156 14 1 5.3217 1.9417 4.5774 15 6 4.0542 3.3605 -1.1612 16 8 3.7752 2.8101 -2.2054 17 6 4.4820 4.8055 -1.1620 18 1 5.3344 4.9157 -0.4917 19 6 3.3279 5.6582 -0.6254 20 6 3.4310 7.0329 -1.3461 21 16 3.9709 6.4680 -3.0109 22 8 4.8836 7.3840 -3.6002 23 8 2.8945 5.9031 -3.7466 24 7 4.9019 5.1688 -2.5171 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9564 0.7806 -0.8891 29 1 3.9558 0.7810 0.8907 30 1 2.5568 1.5571 3.2592 31 1 2.3736 5.1850 -0.8561 32 1 3.4299 5.7915 0.4516 33 1 4.1824 7.6704 -0.8801 34 1 2.4633 7.5324 -1.3908 35 1 5.5960 4.7332 -3.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593477907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:50 Heat of formation + Delta-G solvation = -189.284182 kcal Electronic energy + Delta-G solvation = -24738.593303 eV Core-core repulsion = 20864.210503 eV Total energy + Delta-G solvation = -3874.382801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43003 -40.44164 -38.16528 -37.62561 -37.02998 -36.81963 -36.49615 -33.48925 -32.64597 -30.64341 -28.36149 -27.40989 -26.21844 -23.44669 -22.10800 -21.06720 -20.55013 -19.39949 -18.59976 -18.37761 -18.33873 -17.41797 -17.23446 -16.93506 -16.71085 -16.31958 -16.08953 -15.46637 -15.37744 -14.90902 -14.43332 -14.24252 -14.10494 -14.02784 -13.41553 -13.30384 -13.22923 -13.06332 -13.03249 -12.84602 -12.81700 -12.55911 -12.39135 -12.21314 -11.98091 -11.56100 -11.52612 -11.40388 -11.03983 -10.88615 -10.00779 -9.85923 -8.33580 -5.89349 -0.69637 1.44137 1.57356 1.60398 1.68664 1.70847 1.80500 2.25501 2.36890 2.63464 2.82974 3.07002 3.11824 3.41191 3.64049 3.97371 4.21701 4.27968 4.35112 4.37489 4.41011 4.45430 4.61561 4.68728 4.70618 4.75061 4.90263 5.13794 5.51545 5.64540 5.73914 6.18307 6.35495 7.11312 7.22860 7.49065 7.90044 8.73694 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.006228 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.945254 B = 4494.599112 C = 5725.942094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.380 6.380 3 C 0.483 3.517 4 O -0.531 6.531 5 C 0.152 3.848 6 N -0.432 5.432 7 C -0.355 4.355 8 H 0.132 0.868 9 C 0.001 3.999 10 N -0.891 5.891 11 Si 0.989 3.011 12 H -0.246 1.246 13 H -0.291 1.291 14 H -0.285 1.285 15 C 0.442 3.558 16 O -0.622 6.622 17 C 0.116 3.884 18 H 0.132 0.868 19 C -0.109 4.109 20 C -0.545 4.545 21 S 2.564 3.436 22 O -0.988 6.988 23 O -1.004 7.004 24 N -1.077 6.077 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.270 0.730 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 4.751 1.881 5.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.297 6.297 3 C 0.325 3.675 4 O -0.418 6.418 5 C 0.025 3.975 6 N -0.151 5.151 7 C -0.481 4.481 8 H 0.150 0.850 9 C -0.202 4.202 10 N -0.529 5.529 11 Si 0.814 3.186 12 H -0.169 1.169 13 H -0.218 1.218 14 H -0.212 1.212 15 C 0.230 3.770 16 O -0.508 6.508 17 C 0.004 3.996 18 H 0.149 0.851 19 C -0.149 4.149 20 C -0.679 4.679 21 S 2.662 3.338 22 O -0.978 6.978 23 O -0.994 6.994 24 N -0.841 5.841 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.204 0.796 34 H 0.188 0.812 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 1.813 5.029 0.546 5.373 hybrid contribution -0.111 -0.747 1.190 1.409 sum 1.703 4.281 1.735 4.923 Atomic orbital electron populations 1.23271 0.76239 1.04774 1.01176 1.86422 1.24090 1.34038 1.85115 1.24102 0.92712 0.80826 0.69824 1.90470 1.67251 1.37489 1.46599 1.20501 0.87060 0.86282 1.03611 1.43691 1.56627 1.07988 1.06768 1.20179 1.33775 1.12311 0.81849 0.85031 1.26053 0.94802 0.96893 1.02422 1.69992 1.21872 1.32619 1.28424 0.84925 0.78456 0.78225 0.77015 1.16938 1.21772 1.21153 1.21264 0.82328 0.89944 0.83439 1.90562 1.56053 1.70881 1.33336 1.21050 1.00769 0.92067 0.85728 0.85057 1.22264 0.96728 0.90412 1.05480 1.30652 1.15675 1.04734 1.16867 1.06396 0.74326 0.74650 0.78405 1.93547 1.63059 1.63874 1.77349 1.93599 1.57634 1.76979 1.71141 1.54566 1.53575 1.51685 1.24319 0.93373 0.93354 0.84952 0.89534 0.86125 0.91985 0.91567 0.83874 0.79581 0.81237 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.06 10.57 -51.44 -0.54 -16.61 16 3 C 0.48 23.48 6.12 71.24 0.44 23.92 16 4 O -0.53 -28.81 15.67 21.97 0.34 -28.47 16 5 C 0.15 6.97 5.14 85.63 0.44 7.41 16 6 N -0.43 -19.67 2.18 -639.59 -1.39 -21.06 16 7 C -0.35 -15.02 8.32 84.04 0.70 -14.32 16 8 H 0.13 4.73 5.76 -2.91 -0.02 4.71 16 9 C 0.00 0.05 4.83 84.92 0.41 0.46 16 10 N -0.89 -42.58 9.33 21.66 0.20 -42.38 16 11 Si 0.99 34.21 29.61 68.60 2.03 36.25 16 12 H -0.25 -7.66 7.11 99.48 0.71 -6.95 16 13 H -0.29 -10.47 7.11 99.48 0.71 -9.76 16 14 H -0.29 -10.13 7.11 99.48 0.71 -9.43 16 15 C 0.44 19.85 6.46 87.66 0.57 20.42 16 16 O -0.62 -32.50 16.17 -3.06 -0.05 -32.55 16 17 C 0.12 3.87 2.83 44.32 0.13 3.99 16 18 H 0.13 3.61 6.70 -2.39 -0.02 3.60 16 19 C -0.11 -3.20 5.49 31.54 0.17 -3.03 16 20 C -0.54 -10.83 7.66 72.86 0.56 -10.28 16 21 S 2.56 77.25 6.47 -56.49 -0.37 76.88 16 22 O -0.99 -32.42 18.14 -127.79 -2.32 -34.74 16 23 O -1.00 -41.15 18.14 -127.79 -2.32 -43.47 16 24 N -1.08 -34.12 6.11 -172.34 -1.05 -35.18 16 25 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 27 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.09 3.82 7.61 -2.39 -0.02 3.80 16 29 H 0.12 5.44 6.50 -2.39 -0.02 5.43 16 30 H 0.27 12.48 8.31 -92.71 -0.77 11.71 16 31 H 0.07 2.44 7.82 -2.39 -0.02 2.43 16 32 H 0.14 3.69 7.43 -2.39 -0.02 3.68 16 33 H 0.19 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.17 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.44 12.95 8.96 -92.99 -0.83 12.12 16 Total: -1.00 -77.33 310.89 -0.54 -77.88 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.32 Total: 32.37 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 4.60 Total: 31.08 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -2.24 Total: -98.62 kcal Atomic # 8 Polarization: -150.95 SS G_CDS: -4.89 Total: -155.83 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 2.03 Total: 36.25 kcal Atomic # 16 Polarization: 77.25 SS G_CDS: -0.37 Total: 76.88 kcal Total: -77.33 -0.54 -77.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593477907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.408 kcal (2) G-P(sol) polarization free energy of solvation -77.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds