Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 119.99761 * 2 1 4 4 C 1.50696 * 109.47501 * 275.56993 * 3 2 1 5 5 H 1.08005 * 120.00157 * 4.71631 * 4 3 2 6 6 C 1.37881 * 120.00460 * 184.71759 * 4 3 2 7 7 N 1.31506 * 119.99851 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00149 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47025 * 59.99735 * 8 6 4 10 10 H 1.48491 * 109.46895 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46992 * 299.99934 * 8 6 4 12 12 S 1.65597 * 120.00108 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40350 * 159.56788 * 12 2 1 14 14 O 1.42108 * 106.40326 * 26.65432 * 12 2 1 15 15 N 1.65595 * 107.21870 * 273.11291 * 12 2 1 16 16 C 1.46501 * 120.00156 * 62.77450 * 15 12 2 17 17 C 1.52999 * 109.46979 * 164.44780 * 16 15 12 18 18 C 1.53007 * 109.46974 * 180.02562 * 17 16 15 19 19 C 1.53115 * 109.52064 * 185.00024 * 18 17 16 20 20 C 1.53044 * 109.27706 * 182.43598 * 19 18 17 21 21 N 1.46852 * 109.51852 * 59.17821 * 20 19 18 22 22 C 1.46850 * 111.19794 * 298.25636 * 21 20 19 23 23 C 1.53032 * 109.52194 * 61.74483 * 22 21 20 24 24 H 1.09000 * 109.46989 * 269.99796 * 1 2 3 25 25 H 1.09002 * 109.47249 * 30.00109 * 1 2 3 26 26 H 1.09004 * 109.47078 * 149.99624 * 1 2 3 27 27 H 1.08998 * 109.47534 * 35.57228 * 3 2 1 28 28 H 1.09003 * 109.47226 * 155.57210 * 3 2 1 29 29 H 0.97003 * 120.00487 * 179.97438 * 7 6 4 30 30 H 0.97004 * 119.99893 * 242.77277 * 15 12 2 31 31 H 1.08999 * 109.47066 * 44.44711 * 16 15 12 32 32 H 1.09001 * 109.46901 * 284.44156 * 16 15 12 33 33 H 1.08997 * 109.47482 * 59.99570 * 17 16 15 34 34 H 1.09001 * 109.46794 * 299.99440 * 17 16 15 35 35 H 1.08999 * 109.56985 * 305.15311 * 18 17 16 36 36 H 1.09000 * 109.50724 * 62.49657 * 19 18 17 37 37 H 1.09001 * 109.50135 * 302.37477 * 19 18 17 38 38 H 1.08994 * 109.46321 * 299.16202 * 20 19 18 39 39 H 1.09000 * 109.46170 * 179.19091 * 20 19 18 40 40 H 1.00900 * 111.00498 * 62.35402 * 21 20 19 41 41 H 1.09001 * 109.46282 * 181.76238 * 22 21 20 42 42 H 1.09000 * 109.46319 * 301.73022 * 22 21 20 43 43 H 1.09002 * 109.50325 * 180.87717 * 23 22 21 44 44 H 1.09007 * 109.50355 * 60.76137 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3292 1.7728 -1.4140 5 1 1.8446 1.2457 -2.2226 6 6 3.0684 2.9069 -1.6757 7 7 3.6589 3.5485 -0.6913 8 14 3.2311 3.5321 -3.4285 9 1 1.8844 3.8492 -3.9679 10 1 4.0709 4.7566 -3.4412 11 1 3.8677 2.4869 -4.2697 12 16 2.2930 -1.4341 -0.0006 13 8 3.5999 -1.1427 -0.4764 14 8 1.4385 -2.3906 -0.6126 15 7 2.4637 -1.9023 1.5786 16 6 1.2784 -2.1972 2.3874 17 6 1.6965 -2.9620 3.6448 18 6 0.4584 -3.2706 4.4893 19 6 0.8870 -3.9247 5.8057 20 6 -0.3579 -4.2862 6.6191 21 7 -1.1993 -5.2078 5.8449 22 6 -1.6619 -4.5844 4.5984 23 6 -0.4559 -4.2318 3.7248 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6552 2.0013 0.5978 28 1 3.1894 1.1156 0.4250 29 1 4.1792 4.3462 -0.8753 30 1 3.3486 -1.9812 1.9681 31 1 0.5842 -2.8046 1.8067 32 1 0.7929 -1.2644 2.6742 33 1 2.3907 -2.3547 4.2255 34 1 2.1819 -3.8949 3.3581 35 1 -0.0795 -2.3463 4.7000 36 1 1.5036 -3.2285 6.3742 37 1 1.4584 -4.8285 5.5938 38 1 -0.9215 -3.3804 6.8423 39 1 -0.0566 -4.7652 7.5507 40 1 -0.7126 -6.0717 5.6582 41 1 -2.3077 -5.2799 4.0624 42 1 -2.2194 -3.6771 4.8311 43 1 -0.7988 -3.7550 2.8065 44 1 0.0944 -5.1404 3.4802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593732453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -95.559463 kcal Electronic energy + Delta-G solvation = -23920.374192 eV Core-core repulsion = 20419.440451 eV Total energy + Delta-G solvation = -3500.933741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42808 -36.64527 -35.95644 -35.47303 -35.14778 -32.95472 -32.43515 -31.16541 -28.27475 -27.77584 -25.08150 -24.19484 -23.11544 -22.29771 -21.68197 -20.46076 -18.85808 -17.27633 -16.68657 -16.58765 -16.34026 -15.73845 -15.16052 -14.97873 -14.94588 -14.61881 -14.35798 -14.22523 -13.44687 -13.41223 -13.27728 -12.57206 -12.50874 -12.33769 -12.25484 -12.14208 -11.72764 -11.61314 -11.52719 -11.47606 -11.39568 -11.16078 -11.07052 -11.05460 -10.77302 -10.71491 -10.51279 -10.42767 -10.04441 -9.78320 -9.29947 -8.68297 -8.44367 -8.07137 -6.06625 -4.10932 1.24609 3.33421 3.37087 3.41390 3.52356 3.98693 4.14391 4.33735 4.40906 4.44685 4.64064 4.80413 4.89649 5.02635 5.06312 5.11178 5.15368 5.23549 5.28649 5.39093 5.47589 5.55057 5.58726 5.62609 5.66024 5.72833 5.78020 5.81447 5.95239 5.97574 6.10598 6.14864 6.29988 6.55296 6.69131 7.03870 7.09576 7.26632 7.41215 7.62479 7.90740 8.20314 8.91291 9.54382 11.02040 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.003052 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.664616 B = 9171.274593 C = 9262.781149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.257 3.743 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.782 3.218 13 O -0.965 6.965 14 O -0.999 6.999 15 N -1.136 6.136 16 C 0.119 3.881 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.152 4.152 20 C 0.056 3.944 21 N -0.688 5.688 22 C 0.055 3.945 23 C -0.159 4.159 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.411 0.589 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.339 0.661 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 -14.492 14.366 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.983 6.983 15 N -0.895 5.895 16 C -0.007 4.007 17 C -0.159 4.159 18 C -0.105 4.105 19 C -0.192 4.192 20 C -0.074 4.074 21 N -0.317 5.317 22 C -0.074 4.074 23 C -0.198 4.198 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.412 -14.622 13.915 21.867 hybrid contribution 1.327 0.730 -0.987 1.808 sum -7.085 -13.891 12.928 20.256 Atomic orbital electron populations 1.21376 0.80338 1.03528 1.00060 1.57587 1.14206 1.23312 1.88746 1.19055 0.91198 0.78626 0.97613 1.21466 1.31901 1.10352 0.93430 0.92200 1.24938 0.94993 0.96517 0.97524 1.69904 1.33122 1.18979 1.31416 0.86567 0.78139 0.78167 0.84641 1.20150 1.21138 1.19991 1.01922 0.73354 0.72921 0.72853 1.93641 1.38695 1.84571 1.77947 1.93518 1.69050 1.61192 1.74501 1.56255 1.13943 1.85851 1.33420 1.21255 0.87393 0.99399 0.92668 1.21829 0.97846 1.00718 0.95556 1.21153 0.95910 0.98881 0.94583 1.22312 0.98986 1.01185 0.96677 1.22028 0.92152 0.96994 0.96207 1.60668 1.43129 1.07100 1.20762 1.22043 0.96188 0.99919 0.89282 1.22418 0.97696 0.99919 0.99747 0.94406 0.90371 0.91633 0.95039 0.93997 0.92609 0.75606 0.90718 0.91993 0.91087 0.91299 0.90591 0.91263 0.91947 0.90873 0.90849 0.84341 0.90680 0.90820 0.90670 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.69 59.85 0.64 2.22 16 2 N -1.00 -20.62 3.23 -123.06 -0.40 -21.01 16 3 C 0.26 6.47 5.10 -5.20 -0.03 6.45 16 4 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 S 2.78 55.27 6.09 -107.50 -0.65 54.61 16 13 O -0.96 -23.34 16.99 -57.17 -0.97 -24.31 16 14 O -1.00 -20.88 16.34 -57.17 -0.93 -21.81 16 15 N -1.14 -16.56 6.05 -10.61 -0.06 -16.62 16 16 C 0.12 1.41 6.02 -4.04 -0.02 1.38 16 17 C -0.12 -1.10 4.83 -26.73 -0.13 -1.23 16 18 C -0.09 -0.67 2.25 -90.50 -0.20 -0.88 16 19 C -0.15 -1.04 5.36 -26.65 -0.14 -1.18 16 20 C 0.06 0.38 6.55 -3.83 -0.03 0.35 16 21 N -0.69 -5.05 6.87 -113.81 -0.78 -5.83 16 22 C 0.06 0.40 6.55 -3.84 -0.03 0.38 16 23 C -0.16 -1.24 5.06 -26.66 -0.13 -1.37 16 24 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 26 H 0.07 1.05 7.05 -51.93 -0.37 0.68 16 27 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.41 5.29 8.66 -34.47 -0.30 4.99 16 31 H 0.07 0.89 6.29 -51.93 -0.33 0.57 16 32 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.34 2.19 8.86 -39.29 -0.35 1.84 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -33.87 361.86 -10.65 -44.53 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.53 Total: 1.20 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.49 Total: -7.56 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.51 Total: -69.04 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -1.91 Total: -46.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.65 Total: 54.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.87 -10.65 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593732453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.033 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds