Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46962 * 111.00198 * 2 1 4 4 C 1.53052 * 109.36376 * 183.18620 * 3 2 1 5 5 N 1.46949 * 109.36682 * 301.60521 * 4 3 2 6 6 C 1.46905 * 110.99733 * 183.18982 * 5 4 3 7 7 C 1.50704 * 109.46759 * 169.99765 * 6 5 4 8 8 C 1.35358 * 126.75150 * 95.24947 * 7 6 5 9 9 N 1.35309 * 106.17421 * 180.12189 * 8 7 6 10 10 C 1.46500 * 125.86700 * 179.90271 * 9 8 7 11 11 C 1.52999 * 109.47233 * 123.92024 * 10 9 8 12 12 C 1.50693 * 115.55135 * 295.27809 * 11 10 9 13 13 H 1.08003 * 120.00397 * 99.42819 * 12 11 10 14 14 C 1.37884 * 120.00061 * 279.43772 * 12 11 10 15 15 N 1.31518 * 119.99480 * 5.43018 * 14 12 11 16 16 Si 1.86795 * 120.00298 * 185.43715 * 14 12 11 17 17 H 1.48497 * 109.47202 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.46978 * 299.99408 * 16 14 12 19 19 H 1.48498 * 109.47591 * 59.99368 * 16 14 12 20 20 C 1.53003 * 117.51738 * 80.97225 * 11 10 9 21 21 C 1.52996 * 59.99906 * 107.48371 * 20 11 10 22 22 N 1.28716 * 108.26526 * 359.63826 * 9 8 7 23 23 N 1.28638 * 110.17784 * 0.22674 * 22 9 8 24 24 C 1.46957 * 110.88547 * 59.32060 * 5 4 3 25 25 C 1.46953 * 111.00276 * 123.80194 * 2 1 3 26 26 H 1.09003 * 109.47094 * 59.99195 * 1 2 3 27 27 H 1.08993 * 109.47246 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46967 * 300.00108 * 1 2 3 29 29 H 1.09003 * 109.48345 * 63.22673 * 3 2 1 30 30 H 1.08993 * 109.50928 * 303.17113 * 3 2 1 31 31 H 1.09003 * 109.48746 * 181.62867 * 4 3 2 32 32 H 1.09000 * 109.50445 * 61.58208 * 4 3 2 33 33 H 1.08997 * 109.46999 * 49.99944 * 6 5 4 34 34 H 1.08997 * 109.47017 * 289.99209 * 6 5 4 35 35 H 1.07994 * 126.91037 * 0.02562 * 8 7 6 36 36 H 1.08996 * 109.46983 * 3.91867 * 10 9 8 37 37 H 1.09002 * 109.46824 * 243.92174 * 10 9 8 38 38 H 0.96998 * 119.99548 * 175.27466 * 15 14 12 39 39 H 1.09000 * 117.49746 * 214.97098 * 20 11 10 40 40 H 1.09005 * 117.50059 * 359.97438 * 20 11 10 41 41 H 1.09002 * 117.50134 * 252.51046 * 21 20 11 42 42 H 1.09000 * 117.50498 * 107.48808 * 21 20 11 43 43 H 1.08994 * 109.48444 * 60.64393 * 24 5 4 44 44 H 1.08992 * 109.49040 * 180.71355 * 24 5 4 45 45 H 1.08996 * 109.49187 * 296.78309 * 25 2 1 46 46 H 1.09009 * 109.48762 * 56.84262 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5657 1.0597 6 6 5.5191 0.5658 1.0597 7 6 6.0214 -0.0077 2.3597 8 6 6.3849 -1.2907 2.5922 9 7 6.7635 -1.3458 3.8900 10 6 7.2374 -2.5389 4.5959 11 6 8.6168 -2.2617 5.1970 12 6 9.7197 -2.0060 4.2024 13 1 10.0240 -0.9935 3.9818 14 6 10.3403 -3.0647 3.5738 15 7 9.8999 -4.2899 3.7603 16 14 11.8065 -2.7590 2.4576 17 1 12.2885 -4.0517 1.9083 18 1 11.4015 -1.8668 1.3417 19 1 12.8954 -2.1155 3.2356 20 6 8.6701 -1.4991 6.5224 21 6 8.9856 -2.9958 6.4876 22 7 6.6411 -0.1688 4.3964 23 7 6.2007 0.6522 3.5094 24 6 3.5235 -0.8062 1.0597 25 6 1.9957 -0.7632 1.1400 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6938 1.8773 0.9174 30 1 1.6014 1.9133 -0.8599 31 1 3.9179 2.3448 -0.0512 32 1 3.8257 0.8482 -1.0106 33 1 5.8824 1.5874 0.9488 34 1 5.8824 -0.0412 0.2304 35 1 6.3734 -2.1064 1.8846 36 1 7.3067 -3.3716 3.8961 37 1 6.5379 -2.7913 5.3929 38 1 10.2917 -5.0266 3.2658 39 1 9.5029 -0.8127 6.6749 40 1 7.7223 -1.1944 6.9662 41 1 8.2454 -3.6761 6.9088 42 1 10.0259 -3.2941 6.6173 43 1 3.8253 -1.3115 0.1423 44 1 3.9178 -1.3471 1.9198 45 1 1.6938 -0.2822 2.0703 46 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594653052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 138.035738 kcal Electronic energy + Delta-G solvation = -25445.720452 eV Core-core repulsion = 21987.598054 eV Total energy + Delta-G solvation = -3458.122399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.47098 -39.30395 -36.96312 -35.74681 -33.14555 -32.12151 -31.35341 -30.85324 -28.61212 -27.11482 -25.59841 -25.37728 -23.71908 -23.17111 -21.51957 -21.14681 -20.62260 -19.83856 -19.20084 -16.78757 -16.42218 -15.73816 -15.43959 -15.28978 -15.09019 -14.92298 -14.78161 -14.63621 -14.22078 -14.00352 -13.73928 -13.09411 -13.02830 -12.64720 -12.46773 -12.13455 -11.96718 -11.75432 -11.56145 -11.36235 -11.13450 -11.05089 -10.96022 -10.94968 -10.78181 -10.64282 -10.34036 -10.12184 -9.96647 -9.21986 -8.97658 -8.62313 -8.60175 -8.56772 -8.33478 -8.21515 -6.23469 -4.29846 2.39639 3.09355 3.20631 3.25364 3.27507 3.30264 3.74506 4.07035 4.26759 4.74628 4.77299 4.87026 5.03553 5.06225 5.16142 5.19260 5.25246 5.26438 5.37069 5.37847 5.43902 5.50908 5.61076 5.64731 5.70478 5.73787 5.78861 5.79859 5.90066 5.94515 6.02922 6.12129 6.31546 6.40920 6.66039 6.71516 6.75409 6.79982 6.81757 6.92385 7.08506 7.10995 7.16552 7.33127 7.48379 7.71295 8.22045 8.73329 9.33144 9.37907 10.84863 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.003375 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.850424 B = 8295.221042 C = 8750.585940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.058 3.942 5 N -0.533 5.533 6 C 0.150 3.850 7 C -0.034 4.034 8 C -0.040 4.040 9 N -0.248 5.248 10 C 0.150 3.850 11 C 0.027 3.973 12 C -0.493 4.493 13 H 0.058 0.942 14 C 0.074 3.926 15 N -0.882 5.882 16 Si 0.891 3.109 17 H -0.285 1.285 18 H -0.276 1.276 19 H -0.275 1.275 20 C -0.190 4.190 21 C -0.152 4.152 22 N -0.077 5.077 23 N -0.276 5.276 24 C 0.057 3.943 25 C 0.058 3.942 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.175 0.825 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 4.206 -7.607 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.259 5.259 6 C 0.021 3.979 7 C -0.174 4.174 8 C -0.194 4.194 9 N -0.039 5.039 10 C 0.030 3.970 11 C 0.025 3.975 12 C -0.531 4.531 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.211 1.211 18 H -0.202 1.202 19 H -0.200 1.200 20 C -0.227 4.227 21 C -0.190 4.190 22 N -0.057 5.057 23 N -0.142 5.142 24 C -0.072 4.072 25 C -0.070 4.070 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.193 0.807 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.639 4.829 -6.310 16.656 hybrid contribution 0.820 -0.920 -1.544 1.976 sum -13.818 3.908 -7.854 16.368 Atomic orbital electron populations 1.22334 0.87375 1.01999 1.00569 1.62178 1.07686 1.14124 1.43168 1.22163 0.94747 0.89214 1.00952 1.22133 0.94137 0.98746 0.91998 1.62060 1.07458 1.13916 1.42440 1.20070 0.86026 1.01074 0.90699 1.21398 1.08129 0.91258 0.96582 1.23209 1.07391 1.00173 0.88633 1.47397 1.38561 1.09907 1.08078 1.21952 0.96602 0.81881 0.96613 1.18883 0.91199 1.00097 0.87291 1.20355 1.16333 0.92784 1.23615 0.92333 1.24970 0.96815 0.94933 0.96238 1.69922 1.42238 0.98962 1.40735 0.86656 0.83134 0.77493 0.80844 1.21098 1.20151 1.20019 1.22921 1.01004 0.94603 1.04162 1.22619 1.00925 0.92676 1.02790 1.78223 1.17328 0.88084 1.22034 1.74958 1.15161 1.25373 0.98680 1.22167 0.93813 0.89812 1.01371 1.22171 0.94911 0.98191 0.91776 0.91461 0.91441 0.95633 0.93894 0.90437 0.90056 0.93989 0.89290 0.93248 0.80728 0.87283 0.91306 0.92661 0.90221 0.90921 0.91536 0.89672 0.93963 0.89960 0.93975 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.60 60.06 0.58 0.79 16 2 N -0.55 -5.69 4.97 -242.75 -1.21 -6.89 16 3 C 0.06 0.57 5.62 -3.76 -0.02 0.55 16 4 C 0.06 0.62 5.61 -3.77 -0.02 0.60 16 5 N -0.53 -6.98 4.70 -235.91 -1.11 -8.08 16 6 C 0.15 2.12 5.53 -4.97 -0.03 2.09 16 7 C -0.03 -0.60 5.98 -82.77 -0.49 -1.10 16 8 C -0.04 -0.73 10.45 -17.05 -0.18 -0.91 16 9 N -0.25 -5.08 3.33 -61.26 -0.20 -5.29 16 10 C 0.15 3.08 6.28 -4.04 -0.03 3.06 16 11 C 0.03 0.61 1.31 -155.66 -0.20 0.41 16 12 C -0.49 -12.88 8.71 -34.44 -0.30 -13.18 16 13 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 14 C 0.07 1.91 5.42 -17.82 -0.10 1.81 16 15 N -0.88 -22.90 13.10 55.43 0.73 -22.17 16 16 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.19 -4.07 9.85 -26.73 -0.26 -4.33 16 21 C -0.15 -3.30 9.67 -26.73 -0.26 -3.56 16 22 N -0.08 -1.69 12.85 60.35 0.78 -0.92 16 23 N -0.28 -5.81 12.41 33.29 0.41 -5.40 16 24 C 0.06 0.70 5.42 -3.77 -0.02 0.68 16 25 C 0.06 0.64 5.62 -3.77 -0.02 0.62 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.03 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.21 8.03 -51.93 -0.42 0.80 16 34 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.11 2.28 8.07 -51.93 -0.42 1.86 16 37 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.11 6.41 -51.93 -0.33 0.78 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.76 8.13 -51.92 -0.42 0.34 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -28.77 374.07 -9.24 -38.01 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.89 Total: 2.15 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.35 Total: -12.49 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.60 Total: -48.75 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.77 -9.24 -38.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.046 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds