Wall clock time and date at job start Fri Apr 10 2020 17:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46962 * 111.00198 * 2 1 4 4 C 1.53052 * 109.36376 * 183.18620 * 3 2 1 5 5 N 1.46949 * 109.36682 * 301.60521 * 4 3 2 6 6 C 1.46905 * 110.99733 * 183.18982 * 5 4 3 7 7 C 1.50704 * 109.46759 * 169.99765 * 6 5 4 8 8 C 1.35358 * 126.75150 * 95.24947 * 7 6 5 9 9 N 1.35309 * 106.17421 * 180.12189 * 8 7 6 10 10 C 1.46500 * 125.86700 * 179.90271 * 9 8 7 11 11 C 1.52999 * 109.47233 * 123.92024 * 10 9 8 12 12 C 1.50693 * 115.55135 * 295.27809 * 11 10 9 13 13 H 1.08003 * 120.00397 * 99.42819 * 12 11 10 14 14 C 1.37884 * 120.00061 * 279.43772 * 12 11 10 15 15 N 1.31518 * 119.99480 * 5.43018 * 14 12 11 16 16 Si 1.86795 * 120.00298 * 185.43715 * 14 12 11 17 17 H 1.48497 * 109.47202 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.46978 * 299.99408 * 16 14 12 19 19 H 1.48498 * 109.47591 * 59.99368 * 16 14 12 20 20 C 1.53003 * 117.51738 * 80.97225 * 11 10 9 21 21 C 1.52996 * 59.99906 * 107.48371 * 20 11 10 22 22 N 1.28716 * 108.26526 * 359.63826 * 9 8 7 23 23 N 1.28638 * 110.17784 * 0.22674 * 22 9 8 24 24 C 1.46957 * 110.88547 * 59.32060 * 5 4 3 25 25 C 1.46953 * 111.00276 * 123.80194 * 2 1 3 26 26 H 1.09003 * 109.47094 * 59.99195 * 1 2 3 27 27 H 1.08993 * 109.47246 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46967 * 300.00108 * 1 2 3 29 29 H 1.09003 * 109.48345 * 63.22673 * 3 2 1 30 30 H 1.08993 * 109.50928 * 303.17113 * 3 2 1 31 31 H 1.09003 * 109.48746 * 181.62867 * 4 3 2 32 32 H 1.09000 * 109.50445 * 61.58208 * 4 3 2 33 33 H 1.08997 * 109.46999 * 49.99944 * 6 5 4 34 34 H 1.08997 * 109.47017 * 289.99209 * 6 5 4 35 35 H 1.07994 * 126.91037 * 0.02562 * 8 7 6 36 36 H 1.08996 * 109.46983 * 3.91867 * 10 9 8 37 37 H 1.09002 * 109.46824 * 243.92174 * 10 9 8 38 38 H 0.96998 * 119.99548 * 175.27466 * 15 14 12 39 39 H 1.09000 * 117.49746 * 214.97098 * 20 11 10 40 40 H 1.09005 * 117.50059 * 359.97438 * 20 11 10 41 41 H 1.09002 * 117.50134 * 252.51046 * 21 20 11 42 42 H 1.09000 * 117.50498 * 107.48808 * 21 20 11 43 43 H 1.08994 * 109.48444 * 60.64393 * 24 5 4 44 44 H 1.08992 * 109.49040 * 180.71355 * 24 5 4 45 45 H 1.08996 * 109.49187 * 296.78309 * 25 2 1 46 46 H 1.09009 * 109.48762 * 56.84262 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5657 1.0597 6 6 5.5191 0.5658 1.0597 7 6 6.0214 -0.0077 2.3597 8 6 6.3849 -1.2907 2.5922 9 7 6.7635 -1.3458 3.8900 10 6 7.2374 -2.5389 4.5959 11 6 8.6168 -2.2617 5.1970 12 6 9.7197 -2.0060 4.2024 13 1 10.0240 -0.9935 3.9818 14 6 10.3403 -3.0647 3.5738 15 7 9.8999 -4.2899 3.7603 16 14 11.8065 -2.7590 2.4576 17 1 12.2885 -4.0517 1.9083 18 1 11.4015 -1.8668 1.3417 19 1 12.8954 -2.1155 3.2356 20 6 8.6701 -1.4991 6.5224 21 6 8.9856 -2.9958 6.4876 22 7 6.6411 -0.1688 4.3964 23 7 6.2007 0.6522 3.5094 24 6 3.5235 -0.8062 1.0597 25 6 1.9957 -0.7632 1.1400 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6938 1.8773 0.9174 30 1 1.6014 1.9133 -0.8599 31 1 3.9179 2.3448 -0.0512 32 1 3.8257 0.8482 -1.0106 33 1 5.8824 1.5874 0.9488 34 1 5.8824 -0.0412 0.2304 35 1 6.3734 -2.1064 1.8846 36 1 7.3067 -3.3716 3.8961 37 1 6.5379 -2.7913 5.3929 38 1 10.2917 -5.0266 3.2658 39 1 9.5029 -0.8127 6.6749 40 1 7.7223 -1.1944 6.9662 41 1 8.2454 -3.6761 6.9088 42 1 10.0259 -3.2941 6.6173 43 1 3.8253 -1.3115 0.1423 44 1 3.9178 -1.3471 1.9198 45 1 1.6938 -0.2822 2.0703 46 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594653052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:05 Heat of formation + Delta-G solvation = 119.271316 kcal Electronic energy + Delta-G solvation = -25446.534139 eV Core-core repulsion = 21987.598054 eV Total energy + Delta-G solvation = -3458.936085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.98592 -40.18932 -38.69045 -36.70636 -34.69892 -34.06655 -32.54952 -31.80914 -29.65931 -28.69995 -27.47054 -26.46148 -24.60671 -24.08166 -23.11317 -22.83839 -22.07032 -21.00194 -20.65444 -18.45048 -17.60856 -17.29416 -16.80292 -16.67738 -16.27640 -15.97350 -15.82976 -15.70969 -15.63764 -15.31285 -15.05706 -14.71881 -14.16800 -13.77645 -13.49939 -13.41138 -13.30368 -13.05418 -12.93836 -12.86030 -12.50683 -12.46872 -12.34515 -12.22289 -12.09243 -11.84836 -11.81632 -11.71211 -11.54418 -10.99788 -10.73941 -10.46283 -10.15412 -9.98772 -9.41173 -9.20186 -8.20225 -6.31259 0.90712 1.36222 1.39597 1.45552 1.65576 1.75532 2.36672 2.97617 3.05691 3.07971 3.45032 3.53617 3.90054 3.93914 4.08483 4.11223 4.13062 4.19487 4.24500 4.36481 4.43870 4.44873 4.51196 4.56744 4.61398 4.63350 4.65952 4.71119 4.82539 4.85790 4.92593 4.99085 5.01017 5.02133 5.08125 5.15880 5.22344 5.37239 5.42276 5.58133 5.67473 5.92357 5.94708 5.97996 6.16939 6.19294 6.31175 6.70688 7.37866 7.79142 8.86789 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.003375 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.850424 B = 8295.221042 C = 8750.585940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.059 3.941 4 C 0.059 3.941 5 N -0.548 5.548 6 C 0.154 3.846 7 C -0.028 4.028 8 C -0.043 4.043 9 N -0.254 5.254 10 C 0.158 3.842 11 C 0.007 3.993 12 C -0.510 4.510 13 H 0.030 0.970 14 C 0.044 3.956 15 N -0.893 5.893 16 Si 0.938 3.062 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.280 1.280 20 C -0.180 4.180 21 C -0.144 4.144 22 N -0.110 5.110 23 N -0.301 5.301 24 C 0.060 3.940 25 C 0.062 3.938 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 3.857 -9.070 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.069 4.069 4 C -0.069 4.069 5 N -0.273 5.273 6 C 0.025 3.975 7 C -0.168 4.168 8 C -0.196 4.196 9 N -0.046 5.046 10 C 0.038 3.962 11 C 0.006 3.994 12 C -0.548 4.548 13 H 0.049 0.951 14 C -0.158 4.158 15 N -0.530 5.530 16 Si 0.764 3.236 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.206 1.206 20 C -0.217 4.217 21 C -0.182 4.182 22 N -0.089 5.089 23 N -0.166 5.166 24 C -0.069 4.069 25 C -0.066 4.066 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.218 0.782 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.754 4.489 -7.768 18.129 hybrid contribution 1.140 -0.774 -1.119 1.775 sum -14.614 3.715 -8.886 17.502 Atomic orbital electron populations 1.22393 0.86018 1.02722 1.01109 1.62223 1.08982 1.14207 1.42456 1.22192 0.94260 0.89180 1.01258 1.22204 0.94607 0.98870 0.91207 1.62020 1.06710 1.14598 1.44015 1.20124 0.86936 1.01322 0.89140 1.21983 1.06852 0.91049 0.96947 1.23725 1.06557 1.01155 0.88169 1.47416 1.38750 1.09536 1.08901 1.21784 0.95663 0.81740 0.97012 1.18944 0.91804 1.01380 0.87295 1.20385 1.17872 0.91606 1.24927 0.95125 1.25411 0.98360 0.94839 0.97195 1.69960 1.42788 0.99157 1.41107 0.85932 0.80703 0.77550 0.79375 1.20068 1.20291 1.20623 1.22857 1.01193 0.94318 1.03369 1.22571 1.00471 0.93149 1.02057 1.78179 1.18976 0.88757 1.22957 1.74909 1.15841 1.25985 0.99868 1.22119 0.94547 0.89371 1.00824 1.22111 0.94181 0.98909 0.91445 0.90072 0.90698 0.95888 0.95151 0.88338 0.89163 0.93431 0.88982 0.91521 0.78211 0.87733 0.89230 0.92448 0.91432 0.89452 0.89186 0.91570 0.93433 0.91549 0.95628 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.60 127.69 1.23 1.59 16 2 N -0.55 -10.40 4.97 -921.93 -4.58 -14.98 16 3 C 0.06 1.06 5.62 86.31 0.49 1.54 16 4 C 0.06 1.13 5.61 86.31 0.48 1.62 16 5 N -0.55 -13.57 4.70 -900.30 -4.23 -17.81 16 6 C 0.15 4.11 5.53 85.56 0.47 4.59 16 7 C -0.03 -0.97 5.98 41.60 0.25 -0.73 16 8 C -0.04 -1.51 10.45 83.49 0.87 -0.63 16 9 N -0.25 -10.32 3.33 -347.74 -1.16 -11.48 16 10 C 0.16 6.39 6.28 86.38 0.54 6.93 16 11 C 0.01 0.32 1.31 -52.93 -0.07 0.25 16 12 C -0.51 -26.87 8.71 25.60 0.22 -26.64 16 13 H 0.03 1.74 7.82 -2.91 -0.02 1.72 16 14 C 0.04 2.27 5.42 84.66 0.46 2.73 16 15 N -0.89 -45.71 13.10 21.45 0.28 -45.43 16 16 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.18 -7.69 9.85 30.59 0.30 -7.39 16 21 C -0.14 -6.17 9.67 30.59 0.30 -5.88 16 22 N -0.11 -4.83 12.85 37.02 0.48 -4.36 16 23 N -0.30 -12.68 12.41 -48.59 -0.60 -13.28 16 24 C 0.06 1.39 5.42 86.31 0.47 1.86 16 25 C 0.06 1.29 5.62 86.31 0.49 1.78 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 28 H 0.02 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 2.39 8.03 -2.39 -0.02 2.37 16 34 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 35 H 0.20 5.80 8.06 -2.91 -0.02 5.77 16 36 H 0.10 4.28 8.07 -2.39 -0.02 4.27 16 37 H 0.09 3.19 8.10 -2.39 -0.02 3.17 16 38 H 0.27 13.07 8.32 -92.71 -0.77 12.30 16 39 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 41 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.74 6.41 -2.39 -0.02 1.72 16 45 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.09 1.62 8.13 -2.38 -0.02 1.60 16 Total: -1.00 -60.82 374.07 -0.36 -61.18 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.94 Total: 20.82 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 6.49 Total: -18.39 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -9.82 Total: -107.34 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -60.82 -0.36 -61.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.447 kcal (2) G-P(sol) polarization free energy of solvation -60.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds