Wall clock time and date at job start Fri Apr 10 2020 17:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99918 * 2 1 4 4 C 1.53004 * 109.47002 * 124.99910 * 3 2 1 5 5 N 1.46499 * 109.47048 * 180.02562 * 4 3 2 6 6 C 1.35310 * 125.87106 * 125.32458 * 5 4 3 7 7 C 1.35360 * 106.17429 * 180.11701 * 6 5 4 8 8 C 1.50700 * 126.74867 * 179.85230 * 7 6 5 9 9 N 1.46903 * 109.46950 * 94.71432 * 8 7 6 10 10 C 1.46895 * 110.99825 * 179.97438 * 9 8 7 11 11 C 1.53038 * 109.46137 * 275.06813 * 10 9 8 12 12 C 1.53195 * 109.31391 * 178.61767 * 11 10 9 13 13 N 1.46920 * 108.77699 * 54.63148 * 12 11 10 14 14 C 1.36941 * 120.63223 * 126.41592 * 13 12 11 15 15 H 1.08008 * 119.99614 * 331.82237 * 14 13 12 16 16 C 1.38811 * 120.00409 * 151.82296 * 14 13 12 17 17 N 1.31618 * 119.99696 * 343.07703 * 16 14 13 18 18 Si 1.86793 * 120.00115 * 163.07852 * 16 14 13 19 19 H 1.48505 * 109.47136 * 60.00083 * 18 16 14 20 20 H 1.48505 * 109.47112 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47444 * 299.99838 * 18 16 14 22 22 C 1.46927 * 118.74264 * 306.39047 * 13 12 11 23 23 C 1.53042 * 109.46055 * 154.99790 * 10 9 8 24 24 N 1.33772 * 106.49619 * 359.59184 * 7 6 5 25 25 N 1.28632 * 108.88552 * 0.26117 * 24 7 6 26 26 H 1.07995 * 120.00057 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99690 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00185 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47170 * 5.00058 * 3 2 1 30 30 H 1.08994 * 109.47028 * 244.99703 * 3 2 1 31 31 H 1.08995 * 109.47038 * 60.00066 * 4 3 2 32 32 H 1.09002 * 109.47007 * 299.99460 * 4 3 2 33 33 H 1.07996 * 126.91449 * 359.96621 * 6 5 4 34 34 H 1.09000 * 109.47303 * 334.71060 * 8 7 6 35 35 H 1.08999 * 109.46705 * 214.70859 * 8 7 6 36 36 H 1.00897 * 111.00228 * 56.04265 * 9 8 7 37 37 H 1.09007 * 109.46250 * 35.02725 * 10 9 8 38 38 H 1.09009 * 109.49248 * 298.56532 * 11 10 9 39 39 H 1.08999 * 109.49975 * 58.65889 * 11 10 9 40 40 H 1.08996 * 109.58151 * 294.84356 * 12 11 10 41 41 H 1.09000 * 109.70410 * 174.49224 * 12 11 10 42 42 H 0.97000 * 120.00177 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.58621 * 293.82540 * 22 13 12 44 44 H 1.08994 * 109.70648 * 173.46611 * 22 13 12 45 45 H 1.09001 * 109.49651 * 301.33651 * 23 10 9 46 46 H 1.08994 * 109.49603 * 61.43212 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7671 2.6021 1.1820 6 6 3.8435 3.4730 2.2147 7 6 4.6112 4.5015 1.7846 8 6 4.9924 5.7312 2.5678 9 7 6.3024 5.5231 3.1992 10 6 6.7076 6.7044 3.9726 11 6 7.3870 7.7134 3.0439 12 6 7.7772 8.9582 3.8469 13 7 8.5989 8.5439 4.9921 14 6 9.8268 9.1093 5.2108 15 1 10.4012 9.4911 4.3796 16 6 10.3334 9.1917 6.5006 17 7 9.5307 9.0450 7.5334 18 14 12.1540 9.5106 6.7704 19 1 12.5253 10.8104 6.1555 20 1 12.4384 9.5537 8.2274 21 1 12.9456 8.4221 6.1431 22 6 8.0780 7.5117 5.8988 23 6 7.6845 6.2830 5.0727 24 7 4.9696 4.2089 0.5294 25 7 4.4534 3.0771 0.2021 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 3.7399 0.5066 1.0921 32 1 2.4772 1.2357 2.1131 33 1 3.3825 3.3697 3.1859 34 1 4.2436 5.9183 3.3376 35 1 5.0449 6.5880 1.8961 36 1 7.0012 5.2841 2.5117 37 1 5.8275 7.1622 4.4243 38 1 8.2811 7.2646 2.6110 39 1 6.6987 7.9953 2.2471 40 1 6.8776 9.4590 4.2047 41 1 8.3476 9.6392 3.2152 42 1 9.8847 9.1022 8.4347 43 1 7.2030 7.8945 6.4240 44 1 8.8460 7.2356 6.6213 45 1 7.2078 5.5469 5.7201 46 1 8.5757 5.8478 4.6208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594921552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:07 Heat of formation + Delta-G solvation = 114.627478 kcal Electronic energy + Delta-G solvation = -24174.251749 eV Core-core repulsion = 20715.114292 eV Total energy + Delta-G solvation = -3459.137457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.20375 -39.64173 -37.48021 -36.70658 -34.78638 -34.07023 -32.56415 -31.58878 -30.72185 -30.19092 -27.28878 -25.72560 -25.51729 -23.74236 -22.95514 -22.81373 -21.71410 -20.83288 -20.76453 -18.77675 -18.09726 -17.42791 -16.92419 -16.51565 -16.20510 -16.02702 -15.77713 -15.41162 -15.26958 -14.97520 -14.88600 -14.64279 -14.04981 -13.98305 -13.78163 -13.47739 -13.37069 -13.09067 -12.92378 -12.59686 -12.54773 -12.48681 -12.39641 -12.03214 -11.97906 -11.90977 -11.82304 -11.73097 -11.38523 -11.20197 -11.01304 -10.51954 -10.29391 -10.19211 -9.26444 -8.65493 -7.85750 -5.30700 0.66599 1.26126 1.47086 1.48385 1.49862 1.56511 1.59042 2.52653 3.21544 3.30716 3.52513 3.64443 3.73849 3.78434 3.93647 4.00689 4.05338 4.16654 4.25712 4.28885 4.37448 4.42052 4.51088 4.56481 4.61557 4.72668 4.78046 4.90412 4.91593 5.00358 5.05145 5.06726 5.09521 5.17598 5.21188 5.30195 5.36839 5.55164 5.67153 5.67925 5.74137 5.77768 5.82342 6.13748 6.40389 6.42893 7.17472 7.53547 7.89011 8.40329 9.20455 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.043624 B = 0.002071 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.695842 B =13516.155573 C =13665.536667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C -0.100 4.100 4 C 0.113 3.887 5 N -0.286 5.286 6 C -0.017 4.017 7 C -0.034 4.034 8 C 0.148 3.852 9 N -0.677 5.677 10 C 0.109 3.891 11 C -0.147 4.147 12 C 0.145 3.855 13 N -0.611 5.611 14 C -0.266 4.266 15 H 0.062 0.938 16 C -0.049 4.049 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.276 1.276 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.178 3.822 23 C -0.110 4.110 24 N -0.304 5.304 25 N -0.117 5.117 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.042 0.958 36 H 0.338 0.662 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.049 0.951 42 H 0.250 0.750 43 H 0.000 1.000 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.792 -18.846 -11.624 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.179 4.179 3 C -0.138 4.138 4 C -0.006 4.006 5 N -0.080 5.080 6 C -0.169 4.169 7 C -0.173 4.173 8 C 0.018 3.982 9 N -0.307 5.307 10 C 0.000 4.000 11 C -0.188 4.188 12 C 0.019 3.981 13 N -0.334 5.334 14 C -0.396 4.396 15 H 0.080 0.920 16 C -0.245 4.245 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.051 3.949 23 C -0.150 4.150 24 N -0.171 5.171 25 N -0.096 5.096 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.155 0.845 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.571 -19.428 -12.391 30.233 hybrid contribution 0.985 1.133 0.638 1.631 sum -18.586 -18.295 -11.754 28.606 Atomic orbital electron populations 1.24103 0.95964 1.02801 0.99095 1.22753 0.96041 0.97429 1.01628 1.20920 0.97696 0.97306 0.97879 1.22493 0.94868 0.80150 1.03085 1.47723 1.32920 1.18170 1.09173 1.23951 1.05195 0.90776 0.97010 1.22082 1.02580 1.00206 0.92453 1.20140 0.92267 0.90420 0.95410 1.60722 1.04179 1.36391 1.29405 1.21284 0.96990 0.88423 0.93342 1.22541 1.00061 0.97805 0.98354 1.20962 0.93550 0.94661 0.88922 1.44316 1.17489 1.42719 1.28924 1.19459 0.93939 1.34473 0.91726 0.92019 1.25771 1.01990 1.01097 0.95618 1.70169 1.34739 1.55235 0.97727 0.85367 0.80687 0.78262 0.76284 1.20152 1.21789 1.20666 1.20605 0.95949 0.86885 0.91413 1.21935 0.97871 0.97827 0.97332 1.75011 1.20323 1.07389 1.14363 1.78167 1.09818 1.06900 1.14671 0.88568 0.86934 0.85491 0.91250 0.90808 0.86979 0.84365 0.75548 0.87470 0.94010 0.84498 0.90486 0.93183 0.90900 0.96419 0.93290 0.94054 0.98145 0.92927 0.91269 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 14.32 67.78 0.97 -0.15 16 2 C -0.16 -1.00 9.52 25.64 0.24 -0.76 16 3 C -0.10 -0.91 5.78 29.85 0.17 -0.74 16 4 C 0.11 0.92 6.44 86.38 0.56 1.48 16 5 N -0.29 -4.98 3.44 -347.73 -1.20 -6.18 16 6 C -0.02 -0.29 11.50 83.49 0.96 0.67 16 7 C -0.03 -0.81 6.76 41.60 0.28 -0.53 16 8 C 0.15 3.43 6.04 85.56 0.52 3.94 16 9 N -0.68 -18.64 6.24 -495.44 -3.09 -21.73 16 10 C 0.11 3.52 2.43 44.94 0.11 3.63 16 11 C -0.15 -5.04 5.33 30.67 0.16 -4.88 16 12 C 0.15 6.15 6.52 86.36 0.56 6.72 16 13 N -0.61 -31.41 2.99 -699.10 -2.09 -33.50 16 14 C -0.27 -15.04 9.58 84.03 0.81 -14.23 16 15 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 16 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 17 N -0.93 -55.82 11.19 21.65 0.24 -55.57 16 18 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 C 0.18 8.69 5.30 86.36 0.46 9.15 16 23 C -0.11 -4.23 5.69 30.68 0.17 -4.06 16 24 N -0.30 -8.88 12.41 -48.59 -0.60 -9.49 16 25 N -0.12 -3.00 12.91 37.02 0.48 -2.52 16 26 H 0.10 0.61 7.84 -2.91 -0.02 0.58 16 27 H 0.11 0.45 8.06 -2.91 -0.02 0.43 16 28 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 29 H 0.07 0.72 7.79 -2.39 -0.02 0.70 16 30 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.14 0.28 8.07 -2.39 -0.02 0.26 16 33 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.11 2.03 8.06 -2.39 -0.02 2.01 16 35 H 0.04 1.03 7.41 -2.39 -0.02 1.01 16 36 H 0.34 10.01 8.47 -89.70 -0.76 9.25 16 37 H 0.08 2.43 7.80 -2.38 -0.02 2.41 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 2.16 7.42 -2.39 -0.02 2.14 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.50 374.42 2.35 -69.15 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.19 Total: 14.21 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.39 Total: -2.14 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -6.26 Total: -128.99 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.50 2.35 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594921552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.776 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds