Wall clock time and date at job start Fri Apr 10 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00214 * 2 1 4 4 C 1.50699 * 109.47358 * 66.04040 * 3 2 1 5 5 O 1.21287 * 119.99676 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00272 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47562 * 89.99340 * 7 6 4 9 9 H 1.08000 * 119.99308 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99983 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00359 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99931 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47412 * 59.99733 * 12 10 8 14 14 H 1.48500 * 109.47176 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46743 * 299.99823 * 12 10 8 16 16 C 1.46500 * 119.99717 * 0.02562 * 6 4 3 17 17 C 1.52994 * 109.47249 * 90.00409 * 16 6 4 18 18 C 1.47202 * 109.47080 * 179.97438 * 17 16 6 19 19 N 6.68952 * 104.77807 * 339.68326 * 2 1 3 20 20 C 1.46898 * 111.00519 * 236.04171 * 2 1 3 21 21 C 1.50704 * 109.47256 * 293.95846 * 20 2 1 22 22 C 1.34664 * 126.58651 * 265.03616 * 21 20 2 23 23 N 1.34134 * 108.01786 * 179.74146 * 22 21 20 24 24 C 1.30496 * 109.25675 * 0.37372 * 23 22 21 25 25 N 1.35047 * 108.70161 * 359.62603 * 24 23 22 26 26 H 0.96997 * 126.40535 * 180.25138 * 25 24 23 27 27 H 1.09007 * 109.46643 * 183.95339 * 1 2 3 28 28 H 1.08999 * 109.47047 * 303.95555 * 1 2 3 29 29 H 1.08999 * 109.47004 * 63.96247 * 1 2 3 30 30 H 1.08999 * 109.47264 * 186.05003 * 3 2 1 31 31 H 1.09009 * 109.46450 * 306.04594 * 3 2 1 32 32 H 1.08998 * 109.47244 * 209.99812 * 7 6 4 33 33 H 1.08998 * 109.46820 * 329.99447 * 7 6 4 34 34 H 0.96994 * 120.00468 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47107 * 210.00449 * 16 6 4 36 36 H 1.09001 * 109.47215 * 329.99976 * 16 6 4 37 37 H 1.09000 * 109.47225 * 299.99360 * 17 16 6 38 38 H 1.09001 * 109.47365 * 59.99660 * 17 16 6 39 39 H 1.08999 * 109.47826 * 173.95184 * 20 2 1 40 40 H 1.09012 * 109.46894 * 53.95223 * 20 2 1 41 41 H 1.07998 * 125.99171 * 359.92955 * 22 21 20 42 42 H 1.08002 * 125.65353 * 179.89694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1410 6 7 2.0180 3.3202 1.5232 7 6 1.6699 3.9770 2.7856 8 6 2.7631 3.7373 3.7948 9 1 3.6307 3.1544 3.5228 10 6 2.6557 4.2622 5.0652 11 7 1.5990 4.9716 5.3965 12 14 4.0111 3.9657 6.3159 13 1 5.2882 4.5243 5.8038 14 1 3.6575 4.6303 7.5960 15 1 4.1648 2.5061 6.5425 16 6 2.7804 4.0473 0.5052 17 6 1.8146 4.7723 -0.4342 18 6 2.5807 5.5033 -1.4567 19 7 3.1753 6.0658 -2.2458 20 6 1.9955 -0.7660 -1.1375 21 6 1.6370 -2.2205 -0.9727 22 6 2.4085 -3.1807 -0.4284 23 7 1.7236 -4.3334 -0.4646 24 6 0.5601 -4.1255 -1.0179 25 7 0.4643 -2.8193 -1.3469 26 1 -0.2940 -2.3861 -1.7691 27 1 -0.3633 -1.0253 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4511 -0.9234 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 1.5577 5.0483 2.6189 33 1 0.7322 3.5677 3.1616 34 1 1.5236 5.3411 6.2901 35 1 3.4313 4.7752 0.9896 36 1 3.3848 3.3438 -0.0674 37 1 1.1638 4.0444 -0.9187 38 1 1.2102 5.4758 0.1384 39 1 3.0798 -0.6611 -1.1756 40 1 1.5612 -0.3873 -2.0628 41 1 3.4030 -3.0456 -0.0296 42 1 -0.2019 -4.8733 -1.1813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595596178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:12 Heat of formation + Delta-G solvation = 68.056457 kcal Electronic energy + Delta-G solvation = -24602.838205 eV Core-core repulsion = 21005.848182 eV Total energy + Delta-G solvation = -3596.990022 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14702 -39.56031 -37.20471 -36.65247 -35.18927 -32.92401 -32.58294 -30.94459 -30.81574 -28.75126 -27.03817 -26.45116 -24.06815 -23.44214 -21.98825 -21.60395 -20.82214 -18.63440 -17.99311 -17.61721 -16.74321 -16.46280 -15.90107 -15.75944 -15.23218 -14.79395 -14.67721 -14.54160 -14.19124 -14.03133 -13.88646 -13.54241 -13.44775 -12.91140 -12.84507 -12.52882 -12.44884 -12.22224 -12.07937 -11.83968 -11.69396 -11.37722 -11.28180 -11.01576 -10.86917 -10.61057 -10.18953 -10.12170 -10.10261 -9.71919 -9.05912 -8.59607 -8.46889 -8.26802 -7.85360 -6.08977 -4.13537 1.86691 2.66367 2.74449 2.95957 3.07369 3.25608 3.31618 3.36244 3.40312 3.51760 3.94491 4.22992 4.42866 4.51966 4.70877 4.78759 4.89360 4.98782 5.05251 5.16906 5.21861 5.26648 5.30521 5.36564 5.40435 5.49876 5.53271 5.56774 5.77177 6.01928 6.08944 6.13331 6.63009 6.74093 6.92338 6.98708 7.21736 7.33412 7.41567 7.51411 7.87213 7.95872 8.16577 8.23558 8.83969 8.98561 9.52315 10.99131 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003899 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.816541 B = 7178.878652 C = 9018.381086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.517 5.517 3 C 0.033 3.967 4 C 0.508 3.492 5 O -0.513 6.513 6 N -0.599 5.599 7 C 0.247 3.753 8 C -0.529 4.529 9 H 0.058 0.942 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.117 3.883 17 C -0.050 4.050 18 C 0.216 3.784 19 N -0.445 5.445 20 C 0.130 3.870 21 C -0.012 4.012 22 C -0.005 4.005 23 N -0.496 5.496 24 C 0.182 3.818 25 N -0.568 5.568 26 H 0.416 0.584 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.016 0.984 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.040 0.960 41 H 0.170 0.830 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -8.875 -16.764 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.241 5.241 3 C -0.097 4.097 4 C 0.294 3.706 5 O -0.387 6.387 6 N -0.331 5.331 7 C 0.128 3.872 8 C -0.568 4.568 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.009 4.009 17 C -0.091 4.091 18 C -0.102 4.102 19 N -0.122 5.122 20 C 0.001 3.999 21 C -0.128 4.128 22 C -0.153 4.153 23 N -0.215 5.215 24 C -0.102 4.102 25 N -0.172 5.172 26 H 0.253 0.747 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.035 0.965 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.187 0.813 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.440 -9.250 -16.544 19.111 hybrid contribution -0.481 1.070 -0.159 1.184 sum -2.921 -8.180 -16.703 18.827 Atomic orbital electron populations 1.22603 0.86690 1.02289 1.01385 1.61589 1.08743 1.12203 1.41569 1.22143 1.01828 0.89127 0.96650 1.20118 0.80549 0.81817 0.88123 1.90678 1.39093 1.62860 1.46091 1.48228 1.54256 1.12133 1.18520 1.19324 0.97414 0.92222 0.78221 1.21382 1.05429 1.33308 0.96646 0.92362 1.24904 0.95928 0.94951 0.98122 1.69902 1.28027 1.34842 1.20597 0.86581 0.81916 0.78657 0.80433 1.20243 1.21236 1.20093 1.21298 0.92935 0.96954 0.89725 1.19904 0.97668 0.99251 0.92318 1.29153 0.93742 0.93467 0.93835 1.81257 1.09574 1.10031 1.11349 1.20496 1.01260 0.86560 0.91579 1.21024 0.88226 0.95957 1.07568 1.22109 1.01147 0.88070 1.04024 1.70294 1.04458 1.27969 1.18767 1.24929 0.98309 0.84854 1.02122 1.43350 1.15598 1.10103 1.48172 0.74659 0.92151 0.88522 0.96539 0.87995 0.92468 0.94803 0.93636 0.92629 0.88665 0.90734 0.87845 0.86457 0.88140 0.94202 0.81312 0.77812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.00 60.06 0.54 0.76 16 2 N -0.52 -6.48 4.49 -245.81 -1.10 -7.58 16 3 C 0.03 0.40 4.00 -4.98 -0.02 0.38 16 4 C 0.51 8.86 7.36 -10.99 -0.08 8.78 16 5 O -0.51 -11.47 13.91 5.55 0.08 -11.40 16 6 N -0.60 -10.38 2.46 -175.06 -0.43 -10.81 16 7 C 0.25 5.69 5.16 -5.20 -0.03 5.66 16 8 C -0.53 -13.95 9.39 -34.44 -0.32 -14.27 16 9 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 12 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.12 1.45 5.17 -4.04 -0.02 1.42 16 17 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 18 C 0.22 2.43 15.44 -20.73 -0.32 2.11 16 19 N -0.44 -6.21 18.54 42.19 0.78 -5.43 16 20 C 0.13 1.22 5.52 -4.97 -0.03 1.19 16 21 C -0.01 -0.13 5.94 -81.60 -0.48 -0.62 16 22 C 0.00 -0.06 11.79 -17.81 -0.21 -0.27 16 23 N -0.50 -6.46 11.25 -14.66 -0.16 -6.63 16 24 C 0.18 1.71 13.04 -90.37 -1.18 0.53 16 25 N -0.57 -4.76 5.25 -10.30 -0.05 -4.82 16 26 H 0.42 2.25 8.82 -40.82 -0.36 1.89 16 27 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 28 H 0.10 1.49 5.82 -51.93 -0.30 1.19 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.10 1.06 7.19 -51.93 -0.37 0.68 16 31 H 0.06 0.52 7.17 -51.92 -0.37 0.15 16 32 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.05 1.21 7.42 -51.93 -0.39 0.82 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 37 H 0.10 0.77 7.22 -51.93 -0.38 0.39 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.82 7.93 -51.93 -0.41 0.41 16 40 H 0.04 0.30 8.12 -51.92 -0.42 -0.12 16 41 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -35.67 360.58 -7.92 -43.58 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.74 Total: -0.57 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -2.43 Total: 6.65 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.23 Total: -59.89 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.67 -7.92 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595596178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.638 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds