Wall clock time and date at job start Fri Apr 10 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00214 * 2 1 4 4 C 1.50699 * 109.47358 * 66.04040 * 3 2 1 5 5 O 1.21287 * 119.99676 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00272 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.47562 * 89.99340 * 7 6 4 9 9 H 1.08000 * 119.99308 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99983 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00359 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99931 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47412 * 59.99733 * 12 10 8 14 14 H 1.48500 * 109.47176 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46743 * 299.99823 * 12 10 8 16 16 C 1.46500 * 119.99717 * 0.02562 * 6 4 3 17 17 C 1.52994 * 109.47249 * 90.00409 * 16 6 4 18 18 C 1.47202 * 109.47080 * 179.97438 * 17 16 6 19 19 N 6.68952 * 104.77807 * 339.68326 * 2 1 3 20 20 C 1.46898 * 111.00519 * 236.04171 * 2 1 3 21 21 C 1.50704 * 109.47256 * 293.95846 * 20 2 1 22 22 C 1.34664 * 126.58651 * 265.03616 * 21 20 2 23 23 N 1.34134 * 108.01786 * 179.74146 * 22 21 20 24 24 C 1.30496 * 109.25675 * 0.37372 * 23 22 21 25 25 N 1.35047 * 108.70161 * 359.62603 * 24 23 22 26 26 H 0.96997 * 126.40535 * 180.25138 * 25 24 23 27 27 H 1.09007 * 109.46643 * 183.95339 * 1 2 3 28 28 H 1.08999 * 109.47047 * 303.95555 * 1 2 3 29 29 H 1.08999 * 109.47004 * 63.96247 * 1 2 3 30 30 H 1.08999 * 109.47264 * 186.05003 * 3 2 1 31 31 H 1.09009 * 109.46450 * 306.04594 * 3 2 1 32 32 H 1.08998 * 109.47244 * 209.99812 * 7 6 4 33 33 H 1.08998 * 109.46820 * 329.99447 * 7 6 4 34 34 H 0.96994 * 120.00468 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47107 * 210.00449 * 16 6 4 36 36 H 1.09001 * 109.47215 * 329.99976 * 16 6 4 37 37 H 1.09000 * 109.47225 * 299.99360 * 17 16 6 38 38 H 1.09001 * 109.47365 * 59.99660 * 17 16 6 39 39 H 1.08999 * 109.47826 * 173.95184 * 20 2 1 40 40 H 1.09012 * 109.46894 * 53.95223 * 20 2 1 41 41 H 1.07998 * 125.99171 * 359.92955 * 22 21 20 42 42 H 1.08002 * 125.65353 * 179.89694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1410 6 7 2.0180 3.3202 1.5232 7 6 1.6699 3.9770 2.7856 8 6 2.7631 3.7373 3.7948 9 1 3.6307 3.1544 3.5228 10 6 2.6557 4.2622 5.0652 11 7 1.5990 4.9716 5.3965 12 14 4.0111 3.9657 6.3159 13 1 5.2882 4.5243 5.8038 14 1 3.6575 4.6303 7.5960 15 1 4.1648 2.5061 6.5425 16 6 2.7804 4.0473 0.5052 17 6 1.8146 4.7723 -0.4342 18 6 2.5807 5.5033 -1.4567 19 7 3.1753 6.0658 -2.2458 20 6 1.9955 -0.7660 -1.1375 21 6 1.6370 -2.2205 -0.9727 22 6 2.4085 -3.1807 -0.4284 23 7 1.7236 -4.3334 -0.4646 24 6 0.5601 -4.1255 -1.0179 25 7 0.4643 -2.8193 -1.3469 26 1 -0.2940 -2.3861 -1.7691 27 1 -0.3633 -1.0253 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4511 -0.9234 30 1 3.0797 1.3444 -0.1083 31 1 1.5611 1.9273 -0.8310 32 1 1.5577 5.0483 2.6189 33 1 0.7322 3.5677 3.1616 34 1 1.5236 5.3411 6.2901 35 1 3.4313 4.7752 0.9896 36 1 3.3848 3.3438 -0.0674 37 1 1.1638 4.0444 -0.9187 38 1 1.2102 5.4758 0.1384 39 1 3.0798 -0.6611 -1.1756 40 1 1.5612 -0.3873 -2.0628 41 1 3.4030 -3.0456 -0.0296 42 1 -0.2019 -4.8733 -1.1813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595596178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:12 Heat of formation + Delta-G solvation = 42.921096 kcal Electronic energy + Delta-G solvation = -24603.928156 eV Core-core repulsion = 21005.848182 eV Total energy + Delta-G solvation = -3598.079974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.89595 -40.84130 -38.19076 -37.67592 -36.52545 -34.83255 -33.37853 -32.14778 -31.67551 -30.04209 -28.33238 -27.47730 -25.27905 -24.85143 -23.17542 -22.37916 -21.58530 -19.88652 -18.86967 -18.64309 -18.29270 -17.84766 -17.09290 -16.77581 -16.40782 -16.02425 -15.76297 -15.63046 -15.13530 -15.05463 -14.99769 -14.54728 -14.30138 -14.25683 -13.94804 -13.61418 -13.52778 -13.48598 -13.25433 -12.98709 -12.79211 -12.74824 -12.59567 -12.47215 -12.43334 -12.12540 -11.78596 -11.64196 -10.94300 -10.88341 -10.56016 -10.43067 -9.44405 -9.36197 -9.08652 -8.15666 -6.27402 1.11527 1.41141 1.44625 1.50714 1.72096 1.86309 1.97595 2.21157 2.33231 2.36648 2.47269 3.07391 3.16177 3.26298 3.81527 3.84612 4.05685 4.08023 4.15879 4.19571 4.33314 4.41360 4.52100 4.55071 4.63165 4.68193 4.76677 4.79317 4.87994 5.09433 5.13567 5.17596 5.33751 5.37557 5.65310 5.83293 5.90434 6.00621 6.12309 6.16863 6.62340 6.63589 6.80882 6.88624 7.20247 7.38841 7.63479 8.90534 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003899 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.816541 B = 7178.878652 C = 9018.381086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.046 3.954 4 C 0.500 3.500 5 O -0.573 6.573 6 N -0.600 5.600 7 C 0.263 3.737 8 C -0.539 4.539 9 H 0.053 0.947 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.954 3.046 13 H -0.262 1.262 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.113 3.887 17 C -0.037 4.037 18 C 0.246 3.754 19 N -0.490 5.490 20 C 0.135 3.865 21 C -0.011 4.011 22 C -0.040 4.040 23 N -0.543 5.543 24 C 0.188 3.812 25 N -0.557 5.557 26 H 0.432 0.568 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.002 0.998 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.165 0.835 42 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -9.153 -19.276 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.084 4.084 4 C 0.289 3.711 5 O -0.452 6.452 6 N -0.332 5.332 7 C 0.141 3.859 8 C -0.578 4.578 9 H 0.071 0.929 10 C -0.187 4.187 11 N -0.567 5.567 12 Si 0.780 3.220 13 H -0.187 1.187 14 H -0.208 1.208 15 H -0.207 1.207 16 C -0.012 4.012 17 C -0.078 4.078 18 C -0.071 4.071 19 N -0.168 5.168 20 C 0.007 3.993 21 C -0.128 4.128 22 C -0.188 4.188 23 N -0.263 5.263 24 C -0.096 4.096 25 N -0.162 5.162 26 H 0.272 0.728 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.183 0.817 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -2.066 -9.500 -19.120 21.450 hybrid contribution -0.644 1.100 0.624 1.420 sum -2.710 -8.400 -18.495 20.494 Atomic orbital electron populations 1.22436 0.86872 1.01818 1.01142 1.61442 1.08949 1.12851 1.43974 1.22103 1.03384 0.88966 0.93974 1.21194 0.79054 0.81248 0.89599 1.90661 1.41669 1.64186 1.48650 1.48091 1.54711 1.12685 1.17671 1.18733 0.94552 0.92116 0.80471 1.21757 1.05884 1.32474 0.97650 0.92875 1.25689 0.97959 0.94984 1.00099 1.70007 1.29668 1.35995 1.20997 0.85667 0.79978 0.77994 0.78371 1.18676 1.20826 1.20746 1.21524 0.93164 0.97381 0.89096 1.19831 0.96918 0.99590 0.91429 1.29199 0.92597 0.92341 0.92983 1.81305 1.10911 1.11528 1.13102 1.20561 1.02137 0.85119 0.91470 1.21177 0.88434 0.96370 1.06792 1.22281 1.01866 0.88950 1.05664 1.70239 1.06294 1.28958 1.20837 1.25626 0.97901 0.85819 1.00298 1.43314 1.15536 1.09795 1.47542 0.72769 0.92230 0.92539 0.93350 0.85642 0.88211 0.94899 0.98014 0.92658 0.90070 0.87228 0.84498 0.86435 0.86868 0.91187 0.81748 0.74279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.00 127.69 1.15 1.71 16 2 N -0.55 -12.25 4.49 -931.62 -4.18 -16.44 16 3 C 0.05 0.93 4.00 85.56 0.34 1.27 16 4 C 0.50 16.97 7.36 87.66 0.65 17.62 16 5 O -0.57 -26.40 13.91 -3.05 -0.04 -26.44 16 6 N -0.60 -20.27 2.46 -826.17 -2.03 -22.30 16 7 C 0.26 12.40 5.16 85.63 0.44 12.84 16 8 C -0.54 -28.92 9.39 25.60 0.24 -28.68 16 9 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 10 C 0.01 0.65 5.46 84.65 0.46 1.11 16 11 N -0.93 -53.73 13.29 21.45 0.28 -53.44 16 12 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 13 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 16 C 0.11 2.48 5.17 86.38 0.45 2.92 16 17 C -0.04 -0.57 6.03 28.79 0.17 -0.40 16 18 C 0.25 4.79 15.44 89.43 1.38 6.17 16 19 N -0.49 -12.64 18.54 20.02 0.37 -12.27 16 20 C 0.13 2.04 5.52 85.56 0.47 2.51 16 21 C -0.01 -0.21 5.94 40.95 0.24 0.03 16 22 C -0.04 -0.97 11.79 83.52 0.98 0.01 16 23 N -0.54 -13.91 11.25 -200.31 -2.25 -16.16 16 24 C 0.19 3.18 13.04 180.26 2.35 5.53 16 25 N -0.56 -7.92 5.25 -186.49 -0.98 -8.90 16 26 H 0.43 3.24 8.82 -92.71 -0.82 2.43 16 27 H 0.06 1.28 6.44 -2.38 -0.02 1.27 16 28 H 0.06 1.75 5.82 -2.39 -0.01 1.73 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 2.00 7.19 -2.39 -0.02 1.98 16 31 H 0.10 1.21 7.17 -2.38 -0.02 1.19 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 34 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.08 2.05 8.07 -2.38 -0.02 2.03 16 36 H 0.11 1.67 6.44 -2.39 -0.02 1.66 16 37 H 0.14 1.31 7.22 -2.39 -0.02 1.30 16 38 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 1.42 7.93 -2.39 -0.02 1.40 16 40 H 0.07 0.67 8.12 -2.38 -0.02 0.65 16 41 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -83.04 360.58 2.76 -80.28 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.23 Total: 7.14 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 9.33 Total: 22.65 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -8.79 Total: -129.52 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -83.04 2.76 -80.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595596178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.199 kcal (2) G-P(sol) polarization free energy of solvation -83.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds