Wall clock time and date at job start Fri Apr 10 2020 17:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99792 * 2 1 4 4 H 1.48500 * 109.46775 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47192 * 300.00179 * 3 2 1 6 6 H 1.48505 * 109.47059 * 60.00412 * 3 2 1 7 7 C 1.38794 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99588 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00459 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00122 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47417 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99710 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00145 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99971 * 179.97438 * 13 11 10 15 15 H 1.08994 * 109.37399 * 325.16035 * 14 13 11 16 16 C 1.52878 * 109.42850 * 205.31089 * 14 13 11 17 17 C 1.50708 * 109.66631 * 288.19643 * 16 14 13 18 18 C 1.38134 * 119.95968 * 147.40507 * 17 16 14 19 19 C 1.38264 * 120.06667 * 178.06394 * 18 17 16 20 20 C 1.38306 * 120.11229 * 359.80109 * 19 18 17 21 21 C 1.38081 * 120.06521 * 0.52330 * 20 19 18 22 22 C 1.38827 * 120.06833 * 326.52068 * 17 16 14 23 23 N 1.39747 * 120.10665 * 1.66627 * 22 17 16 24 24 C 1.34414 * 120.78228 * 14.17281 * 23 22 17 25 25 O 1.21281 * 119.68586 * 185.18946 * 24 23 22 26 26 H 0.97002 * 120.00438 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47570 * 59.99825 * 10 9 7 28 28 H 1.09004 * 109.47446 * 299.99872 * 10 9 7 29 29 H 0.96998 * 120.00012 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.42712 * 168.14595 * 16 14 13 31 31 H 1.08999 * 109.44693 * 48.26094 * 16 14 13 32 32 H 1.07995 * 119.97037 * 358.06662 * 18 17 16 33 33 H 1.08005 * 119.94440 * 179.78337 * 19 18 17 34 34 H 1.08008 * 119.96941 * 180.53932 * 20 19 18 35 35 H 1.07995 * 120.01621 * 180.39379 * 21 20 19 36 36 H 0.97001 * 119.61232 * 194.20131 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 -0.0003 14 6 2.3303 -7.7151 0.0009 15 1 1.4138 -7.7575 0.5893 16 6 3.3731 -8.6481 0.6166 17 6 4.5291 -8.8157 -0.3358 18 6 5.8069 -8.9991 0.1558 19 6 6.8630 -9.1930 -0.7153 20 6 6.6425 -9.2080 -2.0806 21 6 5.3683 -9.0184 -2.5777 22 6 4.3084 -8.8042 -1.7064 23 7 3.0194 -8.6025 -2.2072 24 6 2.0374 -8.1413 -1.4136 25 8 0.9056 -8.0628 -1.8423 26 1 -0.4851 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8905 29 1 3.8008 -6.1835 -0.0006 30 1 2.9200 -9.6201 0.8115 31 1 3.7334 -8.2221 1.5529 32 1 5.9812 -8.9911 1.2215 33 1 7.8618 -9.3328 -0.3289 34 1 7.4678 -9.3684 -2.7586 35 1 5.1961 -9.0366 -3.6437 36 1 2.8309 -8.7981 -3.1384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600424165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:14 Heat of formation + Delta-G solvation = -74.745329 kcal Electronic energy + Delta-G solvation = -21887.433961 eV Core-core repulsion = 18461.159952 eV Total energy + Delta-G solvation = -3426.274009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37506 -40.44749 -39.67270 -36.76634 -35.99061 -34.59332 -33.68448 -31.42301 -30.52978 -29.37964 -27.66851 -25.46848 -23.92552 -23.55979 -22.18291 -20.42115 -19.81766 -19.02382 -18.41007 -17.86038 -17.65622 -16.88851 -16.68556 -16.40440 -16.26851 -15.83440 -15.42817 -15.39486 -14.89760 -14.73852 -14.54440 -14.44051 -13.75107 -13.67375 -13.45154 -13.22489 -13.17130 -12.91746 -12.59173 -12.18496 -12.01776 -11.81485 -11.72667 -11.61569 -11.16520 -11.08083 -10.32577 -10.28711 -9.72434 -9.00418 -8.69011 -8.35249 -6.14245 0.18148 0.43057 1.09393 1.32116 1.41715 1.45403 1.51931 1.60321 1.94876 2.23830 2.26565 2.87384 2.99129 3.22052 3.29291 3.50101 3.61447 3.85683 3.94698 4.17618 4.25330 4.35451 4.45351 4.48239 4.50972 4.63499 4.70257 4.94335 5.09426 5.15438 5.19613 5.41437 5.48926 5.66119 5.68394 5.88636 6.15113 6.19399 6.31083 6.82728 7.05847 7.09849 8.74345 Molecular weight = 306.08amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.003261 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.059363 B = 8584.185541 C = 9280.879508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.126 4.126 11 C 0.531 3.469 12 O -0.549 6.549 13 N -0.698 5.698 14 C 0.136 3.864 15 H 0.108 0.892 16 C -0.076 4.076 17 C -0.137 4.137 18 C -0.078 4.078 19 C -0.141 4.141 20 C -0.091 4.091 21 C -0.159 4.159 22 C 0.139 3.861 23 N -0.652 5.652 24 C 0.502 3.498 25 O -0.558 6.558 26 H 0.271 0.729 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.421 0.579 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.836 -22.106 -0.084 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.277 4.277 11 C 0.317 3.683 12 O -0.425 6.425 13 N -0.356 5.356 14 C 0.028 3.972 15 H 0.126 0.874 16 C -0.113 4.113 17 C -0.140 4.140 18 C -0.096 4.096 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.044 3.956 23 N -0.296 5.296 24 C 0.289 3.711 25 O -0.434 6.434 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.259 0.741 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 18.027 -22.260 -0.127 28.644 hybrid contribution 1.293 1.226 -0.855 1.977 sum 19.320 -21.033 -0.983 28.577 Atomic orbital electron populations 1.70202 1.08074 1.28580 1.48046 1.26167 0.95966 1.03437 0.93695 0.84871 0.78656 0.76144 0.78048 1.17808 1.20098 1.19822 1.23238 0.95400 0.91787 1.58837 0.89678 1.85706 1.10463 0.99419 1.97063 1.23338 1.03652 0.93598 1.07103 1.20304 0.86303 0.86895 0.74756 1.90766 1.17345 1.85812 1.48585 1.45617 1.10517 1.03177 1.76247 1.21085 1.01564 0.83201 0.91388 0.87382 1.20856 0.91644 0.99892 0.98867 1.19569 0.96510 1.06769 0.91141 1.21169 0.90106 0.96744 1.01575 1.21490 1.00272 1.01009 0.93166 1.21312 0.96062 0.97050 0.96467 1.20996 0.92124 1.05110 0.99726 1.17921 0.83664 1.00552 0.93496 1.43554 1.08628 1.63012 1.14358 1.21589 0.83932 0.75740 0.89889 1.90806 1.23184 1.53242 1.76146 0.92000 0.86231 0.87465 0.74057 0.86753 0.85445 0.82709 0.83313 0.83396 0.84568 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.29 9.50 67.95 0.65 -30.64 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 9 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 11 C 0.53 20.31 7.80 87.66 0.68 21.00 16 12 O -0.55 -27.00 15.52 -3.05 -0.05 -27.04 16 13 N -0.70 -18.07 5.02 -446.44 -2.24 -20.31 16 14 C 0.14 3.30 2.72 44.17 0.12 3.42 16 15 H 0.11 3.11 7.57 -2.39 -0.02 3.09 16 16 C -0.08 -0.98 5.52 29.81 0.16 -0.82 16 17 C -0.14 -1.77 5.27 -19.75 -0.10 -1.88 16 18 C -0.08 -0.66 9.68 22.25 0.22 -0.44 16 19 C -0.14 -1.08 10.04 22.29 0.22 -0.85 16 20 C -0.09 -0.81 10.04 22.25 0.22 -0.59 16 21 C -0.16 -1.97 9.90 22.39 0.22 -1.75 16 22 C 0.14 2.22 6.54 38.17 0.25 2.47 16 23 N -0.65 -13.77 5.35 -304.23 -1.63 -15.40 16 24 C 0.50 14.64 7.25 87.68 0.64 15.28 16 25 O -0.56 -22.53 17.91 -3.03 -0.05 -22.58 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.42 7.89 8.29 -92.71 -0.77 7.12 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 32 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.41 7.83 8.80 -92.71 -0.82 7.02 16 Total: -1.00 -86.86 329.88 0.92 -85.94 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -0.45 Total: 18.22 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.18 Total: 1.75 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.58 Total: -92.19 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.62 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -86.86 0.92 -85.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600424165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.195 kcal (2) G-P(sol) polarization free energy of solvation -86.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds