Wall clock time and date at job start Fri Apr 10 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99583 * 2 1 4 4 O 1.21547 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.47866 * 119.99487 * 179.97438 * 3 2 1 6 6 C 1.40066 * 120.09381 * 179.97438 * 5 3 2 7 7 C 1.38285 * 117.99539 * 179.74603 * 6 5 3 8 8 C 1.39599 * 118.02735 * 0.53163 * 7 6 5 9 9 N 1.38505 * 120.05095 * 179.73407 * 8 7 6 10 10 C 1.46961 * 110.99948 * 179.72425 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18680 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47066 * 59.99502 * 18 16 14 20 20 H 1.48496 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46833 * 299.99859 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00095 * 303.52624 * 9 8 7 24 24 N 1.32862 * 119.90042 * 359.45917 * 8 7 6 25 25 N 1.28357 * 122.16455 * 0.27701 * 24 8 7 26 26 H 1.09005 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47422 * 300.00621 * 1 2 3 28 28 H 1.09002 * 109.46712 * 60.01078 * 1 2 3 29 29 H 0.97005 * 120.00189 * 179.97438 * 2 1 3 30 30 H 1.08003 * 121.00359 * 0.05267 * 6 5 3 31 31 H 1.08001 * 120.99061 * 180.26790 * 7 6 5 32 32 H 1.09003 * 109.48904 * 63.22312 * 10 9 8 33 33 H 1.08997 * 109.51213 * 303.16598 * 10 9 8 34 34 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 35 35 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 36 36 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 37 37 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 38 38 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 40 40 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 41 41 H 1.09008 * 109.48713 * 296.77988 * 23 9 8 42 42 H 1.09002 * 109.48661 * 56.81950 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3198 2.3791 0.0000 7 6 5.7017 2.3284 0.0060 8 6 6.3122 1.0730 0.0008 9 7 7.6936 0.9735 0.0009 10 6 8.1203 -0.4328 0.0015 11 6 9.6473 -0.4998 0.0819 12 7 10.2274 0.2231 -1.0584 13 6 11.6927 0.1176 -1.0583 14 6 12.2349 0.6528 -2.3585 15 1 11.5587 1.0330 -3.1100 16 6 13.5942 0.6563 -2.5892 17 7 14.4176 0.1929 -1.6743 18 14 14.2665 1.3204 -4.2006 19 1 13.8733 2.7445 -4.3515 20 1 15.7476 1.2136 -4.2004 21 1 13.7129 0.5316 -5.3304 22 6 9.8007 1.6294 -1.0591 23 6 8.2738 1.6964 -1.1394 24 7 5.5660 -0.0263 0.0012 25 7 4.2832 0.0186 0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.9501 -0.8401 0.0004 30 1 3.7978 3.3246 0.0000 31 1 6.2914 3.2333 0.0102 32 1 7.7829 -0.9157 -0.9156 33 1 7.6881 -0.9440 0.8618 34 1 9.9676 -1.5413 0.0533 35 1 9.9829 -0.0413 1.0120 36 1 12.0986 0.6972 -0.2293 37 1 11.9816 -0.9275 -0.9469 38 1 15.3740 0.1957 -1.8365 39 1 10.1381 2.1122 -0.1419 40 1 10.2330 2.1402 -1.9195 41 1 7.9381 1.2377 -2.0696 42 1 7.9531 2.7378 -1.1110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:22 Heat of formation + Delta-G solvation = 48.296069 kcal Electronic energy + Delta-G solvation = -24324.844675 eV Core-core repulsion = 20726.997777 eV Total energy + Delta-G solvation = -3597.846897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56309 -39.83303 -38.74405 -35.67337 -35.03268 -33.43852 -32.76764 -31.49839 -30.76105 -28.38359 -27.15202 -25.52121 -25.28954 -23.44922 -23.01272 -21.59917 -21.22601 -19.60245 -18.86608 -17.64956 -17.53462 -16.37804 -15.98103 -15.97351 -15.28319 -15.12037 -14.93057 -14.52385 -14.40826 -14.31701 -14.02854 -13.75809 -13.52691 -13.32283 -13.08538 -12.65596 -12.31390 -12.08954 -11.84948 -11.39091 -11.10755 -10.92898 -10.88867 -10.79663 -10.62305 -10.49382 -10.48370 -10.37622 -9.90723 -9.86539 -9.52584 -9.27768 -8.54249 -8.47963 -7.39198 -6.08836 -4.11111 0.25567 0.56520 2.34432 2.73723 3.18052 3.29017 3.33900 3.36110 3.46288 3.79919 4.18813 4.36023 4.42050 4.51400 4.70163 4.77110 4.85480 4.98761 5.12486 5.24933 5.27084 5.31764 5.37933 5.46130 5.52034 5.56338 5.65222 5.71576 5.84111 5.97665 6.03518 6.28424 6.38551 6.45084 6.64964 6.83653 7.05817 7.18786 7.24617 7.70159 7.74931 7.97128 8.07754 8.37265 8.43465 8.95508 9.53479 11.01828 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002479 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.679837 B =11293.995014 C =11554.208776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.717 5.717 3 C 0.584 3.416 4 O -0.534 6.534 5 C -0.021 4.021 6 C -0.043 4.043 7 C -0.141 4.141 8 C 0.286 3.714 9 N -0.467 5.467 10 C 0.066 3.934 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.065 3.935 23 C 0.061 3.939 24 N -0.280 5.280 25 N -0.185 5.185 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.414 0.586 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.697 1.532 4.496 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.369 5.369 3 C 0.368 3.632 4 O -0.410 6.410 5 C -0.171 4.171 6 C -0.072 4.072 7 C -0.173 4.173 8 C 0.048 3.952 9 N -0.184 5.184 10 C -0.060 4.060 11 C -0.077 4.077 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.064 4.064 23 C -0.064 4.064 24 N -0.131 5.131 25 N -0.032 5.032 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.250 0.750 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.903 0.609 4.515 23.352 hybrid contribution 0.903 1.513 -0.531 1.840 sum -22.000 2.123 3.984 22.458 Atomic orbital electron populations 1.21618 0.78884 1.02678 1.02543 1.45630 1.07943 1.09010 1.74292 1.17512 0.85217 0.84137 0.76376 1.90799 1.68807 1.31235 1.50129 1.22448 0.95723 0.92215 1.06667 1.22212 0.93605 0.99647 0.91703 1.21997 0.94772 0.98618 1.01867 1.21763 0.91935 0.91310 0.90152 1.58984 1.01583 1.17040 1.40753 1.22261 0.96172 0.84668 1.02893 1.22177 0.92024 1.00072 0.93443 1.62334 1.13854 1.10570 1.39671 1.19715 0.79211 0.97373 0.96757 1.21087 0.91409 1.40947 1.01536 0.91949 1.24993 0.96999 0.95563 0.96997 1.69948 1.03237 1.46402 1.34020 0.86551 0.77668 0.79388 0.83738 1.20270 1.21337 1.20155 1.22051 0.90544 0.91653 1.02108 1.22579 0.97019 0.97608 0.89235 1.73423 0.98686 1.25308 1.15701 1.72948 1.01769 1.23936 1.04572 0.90218 0.91929 0.91904 0.75039 0.82111 0.82309 0.91781 0.89583 0.90004 0.94866 0.98872 0.94958 0.92783 0.94709 0.88459 0.92250 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.72 -6.12 5.70 -68.03 -0.39 -6.50 16 3 C 0.58 6.63 7.80 -12.32 -0.10 6.53 16 4 O -0.53 -7.28 16.38 5.32 0.09 -7.20 16 5 C -0.02 -0.25 6.83 -82.84 -0.57 -0.81 16 6 C -0.04 -0.44 9.71 -38.88 -0.38 -0.82 16 7 C -0.14 -1.49 9.30 -39.06 -0.36 -1.85 16 8 C 0.29 3.75 6.46 -154.93 -1.00 2.75 16 9 N -0.47 -6.58 4.73 -172.91 -0.82 -7.39 16 10 C 0.07 0.99 4.79 -3.76 -0.02 0.97 16 11 C 0.05 0.89 5.61 -3.77 -0.02 0.87 16 12 N -0.54 -10.94 4.70 -235.91 -1.11 -12.05 16 13 C 0.19 4.84 4.72 -4.97 -0.02 4.82 16 14 C -0.51 -13.76 8.47 -34.44 -0.29 -14.05 16 15 H 0.06 1.64 7.13 -52.48 -0.37 1.27 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 18 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.07 1.15 5.43 -3.77 -0.02 1.13 16 23 C 0.06 0.85 5.37 -3.77 -0.02 0.83 16 24 N -0.28 -3.93 9.89 31.21 0.31 -3.62 16 25 N -0.18 -2.36 10.73 33.32 0.36 -2.00 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.41 3.04 8.17 -40.82 -0.33 2.71 16 30 H 0.16 1.36 7.71 -52.48 -0.40 0.96 16 31 H 0.16 1.29 7.25 -52.49 -0.38 0.91 16 32 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.09 1.20 7.83 -51.93 -0.41 0.80 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 37 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.82 6.79 -51.93 -0.35 1.47 16 41 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 42 H 0.08 0.92 6.84 -51.93 -0.36 0.56 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -31.63 348.08 -8.81 -40.43 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.95 Total: -0.66 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.26 Total: 2.99 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.91 Total: -56.82 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.09 Total: -7.20 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.63 -8.81 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.731 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds