Wall clock time and date at job start Fri Apr 10 2020 17:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99583 * 2 1 4 4 O 1.21547 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.47866 * 119.99487 * 179.97438 * 3 2 1 6 6 C 1.40066 * 120.09381 * 179.97438 * 5 3 2 7 7 C 1.38285 * 117.99539 * 179.74603 * 6 5 3 8 8 C 1.39599 * 118.02735 * 0.53163 * 7 6 5 9 9 N 1.38505 * 120.05095 * 179.73407 * 8 7 6 10 10 C 1.46961 * 110.99948 * 179.72425 * 9 8 7 11 11 C 1.53059 * 109.36302 * 183.18680 * 10 9 8 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47066 * 59.99502 * 18 16 14 20 20 H 1.48496 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46833 * 299.99859 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00095 * 303.52624 * 9 8 7 24 24 N 1.32862 * 119.90042 * 359.45917 * 8 7 6 25 25 N 1.28357 * 122.16455 * 0.27701 * 24 8 7 26 26 H 1.09005 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47422 * 300.00621 * 1 2 3 28 28 H 1.09002 * 109.46712 * 60.01078 * 1 2 3 29 29 H 0.97005 * 120.00189 * 179.97438 * 2 1 3 30 30 H 1.08003 * 121.00359 * 0.05267 * 6 5 3 31 31 H 1.08001 * 120.99061 * 180.26790 * 7 6 5 32 32 H 1.09003 * 109.48904 * 63.22312 * 10 9 8 33 33 H 1.08997 * 109.51213 * 303.16598 * 10 9 8 34 34 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 35 35 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 36 36 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 37 37 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 38 38 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 40 40 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 41 41 H 1.09008 * 109.48713 * 296.77988 * 23 9 8 42 42 H 1.09002 * 109.48661 * 56.81950 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3198 2.3791 0.0000 7 6 5.7017 2.3284 0.0060 8 6 6.3122 1.0730 0.0008 9 7 7.6936 0.9735 0.0009 10 6 8.1203 -0.4328 0.0015 11 6 9.6473 -0.4998 0.0819 12 7 10.2274 0.2231 -1.0584 13 6 11.6927 0.1176 -1.0583 14 6 12.2349 0.6528 -2.3585 15 1 11.5587 1.0330 -3.1100 16 6 13.5942 0.6563 -2.5892 17 7 14.4176 0.1929 -1.6743 18 14 14.2665 1.3204 -4.2006 19 1 13.8733 2.7445 -4.3515 20 1 15.7476 1.2136 -4.2004 21 1 13.7129 0.5316 -5.3304 22 6 9.8007 1.6294 -1.0591 23 6 8.2738 1.6964 -1.1394 24 7 5.5660 -0.0263 0.0012 25 7 4.2832 0.0186 0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.9501 -0.8401 0.0004 30 1 3.7978 3.3246 0.0000 31 1 6.2914 3.2333 0.0102 32 1 7.7829 -0.9157 -0.9156 33 1 7.6881 -0.9440 0.8618 34 1 9.9676 -1.5413 0.0533 35 1 9.9829 -0.0413 1.0120 36 1 12.0986 0.6972 -0.2293 37 1 11.9816 -0.9275 -0.9469 38 1 15.3740 0.1957 -1.8365 39 1 10.1381 2.1122 -0.1419 40 1 10.2330 2.1402 -1.9195 41 1 7.9381 1.2377 -2.0696 42 1 7.9531 2.7378 -1.1110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601262468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:21 Heat of formation + Delta-G solvation = 23.865973 kcal Electronic energy + Delta-G solvation = -24325.904043 eV Core-core repulsion = 20726.997777 eV Total energy + Delta-G solvation = -3598.906266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.51249 -40.79533 -39.90352 -37.10492 -35.79922 -34.71185 -34.31409 -32.66844 -32.04984 -29.86751 -28.12591 -26.97191 -26.28254 -24.62237 -24.25087 -23.29313 -22.06519 -20.96206 -19.70425 -18.68017 -18.58495 -18.34499 -16.90622 -16.80194 -16.74561 -16.18946 -15.99118 -15.93595 -15.65500 -15.52446 -15.29093 -14.99931 -14.77010 -14.30984 -14.01169 -13.86760 -13.51930 -13.15305 -13.10164 -13.04593 -12.73577 -12.58553 -12.34056 -12.22683 -12.19014 -11.76071 -11.62292 -11.37410 -11.35502 -11.23640 -10.83794 -10.59986 -10.24659 -9.58808 -9.08108 -8.19540 -6.29815 -0.65631 -0.29597 1.43274 1.45006 1.46005 1.53773 1.97253 2.19854 2.41130 2.54176 2.90100 3.12588 3.22579 3.27554 3.58436 3.65620 3.81697 3.90114 4.03875 4.20398 4.27013 4.36168 4.39929 4.48225 4.54515 4.62924 4.68973 4.80144 4.85117 4.91623 4.94350 4.95063 5.01086 5.20659 5.24662 5.29025 5.53206 5.64109 5.76371 6.03805 6.28131 6.31872 6.56721 6.85531 6.97077 7.39987 7.43239 8.91302 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002479 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.679837 B =11293.995014 C =11554.208776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.708 5.708 3 C 0.580 3.420 4 O -0.561 6.561 5 C -0.022 4.022 6 C -0.039 4.039 7 C -0.128 4.128 8 C 0.272 3.728 9 N -0.471 5.471 10 C 0.081 3.919 11 C 0.054 3.946 12 N -0.547 5.547 13 C 0.209 3.791 14 C -0.523 4.523 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.066 3.934 23 C 0.071 3.929 24 N -0.303 5.303 25 N -0.196 5.196 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.420 0.580 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.028 0.972 36 H -0.035 1.035 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.029 0.971 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.592 2.703 3.763 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.358 5.358 3 C 0.363 3.637 4 O -0.439 6.439 5 C -0.172 4.172 6 C -0.068 4.068 7 C -0.159 4.159 8 C 0.034 3.966 9 N -0.188 5.188 10 C -0.046 4.046 11 C -0.075 4.075 12 N -0.272 5.272 13 C 0.083 3.917 14 C -0.561 4.561 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.195 1.195 22 C -0.063 4.063 23 C -0.054 4.054 24 N -0.153 5.153 25 N -0.042 5.042 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.257 0.743 30 H 0.200 0.800 31 H 0.206 0.794 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.047 0.953 36 H -0.017 1.017 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.850 1.747 3.788 25.198 hybrid contribution 1.360 1.110 -0.251 1.773 sum -23.490 2.857 3.537 23.926 Atomic orbital electron populations 1.21831 0.77294 1.04782 1.02241 1.45712 1.09056 1.08493 1.72561 1.17558 0.85130 0.84512 0.76469 1.90785 1.69144 1.32165 1.51809 1.22699 0.96111 0.92624 1.05783 1.22481 0.93581 1.00011 0.90709 1.22273 0.94949 0.98534 1.00110 1.21806 0.91198 0.92289 0.91289 1.58995 1.02563 1.16148 1.41048 1.22029 0.93854 0.85794 1.02908 1.22198 0.93775 0.99456 0.92076 1.62240 1.10871 1.12761 1.41328 1.19347 0.82256 0.94879 0.95205 1.21414 0.91843 1.40703 1.02141 0.91570 1.25918 0.97386 0.95772 1.00622 1.70085 1.03519 1.47683 1.36174 0.85437 0.76786 0.79216 0.79181 1.18936 1.21175 1.19488 1.22042 0.93403 0.89644 1.01191 1.22480 0.93910 0.99824 0.89136 1.73337 0.99289 1.26255 1.16402 1.72916 1.01330 1.24520 1.05452 0.86998 0.92167 0.92214 0.74344 0.80036 0.79405 0.92627 0.88564 0.90276 0.95339 1.01746 0.97755 0.92724 0.95302 0.89726 0.92771 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.21 16 2 N -0.71 -10.87 5.70 -487.44 -2.78 -13.65 16 3 C 0.58 12.25 7.80 86.79 0.68 12.93 16 4 O -0.56 -14.48 16.38 -3.86 -0.06 -14.55 16 5 C -0.02 -0.48 6.83 42.00 0.29 -0.19 16 6 C -0.04 -0.70 9.71 22.72 0.22 -0.48 16 7 C -0.13 -2.28 9.30 22.61 0.21 -2.07 16 8 C 0.27 6.55 6.46 133.21 0.86 7.41 16 9 N -0.47 -12.47 4.73 -700.96 -3.31 -15.78 16 10 C 0.08 2.37 4.79 86.31 0.41 2.78 16 11 C 0.05 1.88 5.61 86.31 0.48 2.36 16 12 N -0.55 -22.65 4.70 -900.27 -4.23 -26.88 16 13 C 0.21 10.86 4.72 85.56 0.40 11.26 16 14 C -0.52 -28.61 8.47 25.60 0.22 -28.40 16 15 H 0.07 3.50 7.13 -2.91 -0.02 3.48 16 16 C 0.00 0.07 5.46 84.65 0.46 0.53 16 17 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 18 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.07 2.30 5.43 86.31 0.47 2.77 16 23 C 0.07 1.86 5.37 86.31 0.46 2.32 16 24 N -0.30 -8.06 9.89 -55.17 -0.55 -8.60 16 25 N -0.20 -4.71 10.73 -48.50 -0.52 -5.23 16 26 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.42 5.47 8.17 -92.70 -0.76 4.72 16 30 H 0.18 2.49 7.71 -2.91 -0.02 2.47 16 31 H 0.19 2.19 7.25 -2.91 -0.02 2.17 16 32 H 0.06 1.72 8.05 -2.39 -0.02 1.71 16 33 H 0.10 2.63 7.83 -2.39 -0.02 2.61 16 34 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H -0.04 -1.99 8.12 -2.39 -0.02 -2.01 16 37 H 0.00 0.24 8.03 -2.39 -0.02 0.23 16 38 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 3.15 6.79 -2.39 -0.02 3.14 16 41 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.12 2.23 6.84 -2.39 -0.02 2.21 16 Total: -1.00 -69.48 348.08 -2.32 -71.80 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.28 Total: 9.40 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 6.54 Total: 13.43 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -11.11 Total: -125.23 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.06 Total: -14.55 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.48 -2.32 -71.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.670 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds