Wall clock time and date at job start Fri Apr 10 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00068 * 2 1 4 4 C 1.50699 * 109.47623 * 275.00126 * 3 2 1 5 5 H 1.08003 * 119.99793 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00363 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99860 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00257 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47170 * 90.00408 * 8 6 4 10 10 H 1.48500 * 109.47032 * 210.00426 * 8 6 4 11 11 H 1.48501 * 109.46828 * 330.00182 * 8 6 4 12 12 S 1.65598 * 119.99903 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40280 * 156.45835 * 12 2 1 14 14 O 1.42103 * 106.40535 * 23.53554 * 12 2 1 15 15 N 1.65598 * 107.21497 * 269.99559 * 12 2 1 16 16 C 1.45341 * 120.35814 * 269.72321 * 15 12 2 17 17 C 1.53445 * 108.41391 * 223.62311 * 16 15 12 18 18 C 1.52879 * 109.41551 * 77.73928 * 17 16 15 19 19 C 1.53964 * 109.71495 * 287.10496 * 18 17 16 20 20 C 1.52450 * 110.73529 * 315.64916 * 19 18 17 21 21 C 1.53804 * 109.41910 * 113.72641 * 20 19 18 22 22 H 1.09004 * 109.52248 * 42.03812 * 21 20 19 23 23 N 1.46901 * 109.56940 * 162.19275 * 21 20 19 24 24 C 1.46966 * 120.35546 * 90.00126 * 15 12 2 25 25 H 1.09000 * 109.46907 * 269.99451 * 1 2 3 26 26 H 1.09000 * 109.47234 * 29.99541 * 1 2 3 27 27 H 1.08997 * 109.47193 * 149.99801 * 1 2 3 28 28 H 1.09003 * 109.47148 * 35.00673 * 3 2 1 29 29 H 1.09002 * 109.47128 * 155.00391 * 3 2 1 30 30 H 0.97005 * 119.99825 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.67410 * 343.35380 * 16 15 12 32 32 H 1.08998 * 109.67958 * 103.88768 * 16 15 12 33 33 H 1.08999 * 109.48116 * 317.75297 * 17 16 15 34 34 H 1.09003 * 109.48984 * 197.72775 * 17 16 15 35 35 H 1.09005 * 109.43174 * 167.03264 * 18 17 16 36 36 H 1.08996 * 109.43540 * 47.18125 * 18 17 16 37 37 H 1.08995 * 109.22920 * 195.32367 * 19 18 17 38 38 H 1.09003 * 109.22391 * 75.97055 * 19 18 17 39 39 H 1.08996 * 109.47842 * 353.74433 * 20 19 18 40 40 H 1.09001 * 109.48868 * 233.71621 * 20 19 18 41 41 H 1.00894 * 111.00251 * 299.71813 * 23 21 20 42 42 H 1.00898 * 111.00130 * 63.67483 * 23 21 20 43 43 H 1.08999 * 109.53831 * 187.98377 * 24 15 12 44 44 H 1.09001 * 109.52979 * 308.14146 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6662 7 7 3.5025 3.6474 -0.6704 8 14 3.1776 3.5674 -3.4206 9 1 2.0167 4.4277 -3.7630 10 1 4.4307 4.3546 -3.5440 11 1 3.2268 2.4097 -4.3494 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5810 16 6 3.7359 -1.4258 2.2809 17 6 4.2829 -2.6120 3.0859 18 6 5.0197 -3.5670 2.1467 19 6 4.0023 -4.3290 1.2779 20 6 2.8309 -4.8182 2.1222 21 6 1.5491 -4.0850 1.6921 22 1 1.5159 -4.0170 0.6047 23 7 0.3744 -4.8239 2.1739 24 6 1.5498 -2.6840 2.2901 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6502 2.0042 0.5896 29 1 3.1858 1.1176 0.4343 30 1 3.9660 4.4811 -0.8469 31 1 4.4834 -1.0959 1.5594 32 1 3.4901 -0.6061 2.9561 33 1 3.4570 -3.1381 3.5647 34 1 4.9721 -2.2476 3.8478 35 1 5.5993 -4.2787 2.7347 36 1 5.6908 -2.9976 1.5038 37 1 4.4942 -5.1852 0.8164 38 1 3.6296 -3.6662 0.4969 39 1 3.0308 -4.6141 3.1741 40 1 2.7018 -5.8909 1.9782 41 1 0.3519 -5.7569 1.7906 42 1 0.3500 -4.8465 3.1823 43 1 1.8117 -2.7388 3.3468 44 1 0.5602 -2.2400 2.1824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601344969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:28 Heat of formation + Delta-G solvation = -67.702685 kcal Electronic energy + Delta-G solvation = -25798.197321 eV Core-core repulsion = 22298.471541 eV Total energy + Delta-G solvation = -3499.725780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.31910 -36.75055 -35.44776 -35.14166 -34.86521 -33.94246 -32.41535 -30.22418 -27.75200 -26.99337 -26.27496 -25.01662 -22.50147 -22.07694 -21.58039 -19.77043 -18.34354 -17.25226 -16.93096 -16.54198 -16.24350 -15.65365 -15.27872 -14.93611 -14.53773 -14.32122 -14.07040 -13.66306 -13.37637 -13.26089 -13.16950 -12.80550 -12.31931 -12.17662 -12.13662 -11.71121 -11.66011 -11.36081 -11.27387 -11.13982 -11.08040 -11.01362 -10.94179 -10.90321 -10.70675 -10.66281 -10.51157 -10.10645 -9.97445 -9.73667 -8.84585 -8.55877 -8.42786 -8.01766 -6.05573 -4.09482 1.21781 3.32366 3.38486 3.44110 3.47494 4.02432 4.45133 4.54158 4.61908 4.79468 4.86356 4.93601 5.04071 5.05193 5.14326 5.29308 5.39772 5.44132 5.55698 5.69571 5.70813 5.75444 5.77657 5.90675 5.94331 6.04577 6.06184 6.13116 6.17706 6.27261 6.28964 6.40982 6.45439 6.58577 6.87347 7.09606 7.24222 7.38930 7.42540 7.63400 7.92155 8.21647 8.92867 9.55714 11.02988 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.005043 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.638593 B = 5550.681890 C = 6001.722659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.997 5.997 3 C 0.257 3.743 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.778 3.222 13 O -0.962 6.962 14 O -0.990 6.990 15 N -1.006 6.006 16 C 0.115 3.885 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.154 4.154 21 C 0.047 3.953 22 H 0.118 0.882 23 N -0.837 5.837 24 C 0.135 3.865 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.343 0.657 42 H 0.333 0.667 43 H 0.080 0.920 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 -14.792 10.786 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.839 5.839 3 C 0.135 3.865 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.788 3.212 13 O -0.946 6.946 14 O -0.974 6.974 15 N -0.844 5.844 16 C -0.011 4.011 17 C -0.178 4.178 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.194 4.194 21 C -0.065 4.065 22 H 0.135 0.865 23 N -0.365 5.365 24 C 0.009 3.991 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.098 0.902 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.040 -14.513 9.690 17.569 hybrid contribution 0.784 0.065 -0.107 0.794 sum -1.256 -14.448 9.583 17.383 Atomic orbital electron populations 1.21350 0.80113 1.03429 1.00212 1.57651 1.14364 1.23354 1.88572 1.19039 0.90915 0.78896 0.97653 1.21494 1.36053 1.06301 0.92927 0.92242 1.24924 0.95089 0.96472 0.97483 1.69921 1.37390 1.15290 1.30921 0.86520 0.77549 0.78855 0.84705 1.20572 1.21022 1.19694 1.02142 0.73449 0.72795 0.72852 1.93613 1.40584 1.84961 1.75451 1.93478 1.67383 1.59673 1.76859 1.58045 1.28837 1.64607 1.32884 1.21337 0.86612 0.96102 0.97033 1.22238 1.00606 0.96819 0.98176 1.21763 0.97668 0.98145 0.98088 1.21588 0.95927 0.99468 0.98298 1.22656 0.96564 0.99429 1.00715 1.22614 0.87128 0.93395 1.03407 0.86465 1.58798 1.42755 1.21825 1.13097 1.21102 0.91567 0.89540 0.96895 0.94334 0.90489 0.91499 0.94786 0.94598 0.92702 0.88628 0.91896 0.90337 0.91186 0.92268 0.91204 0.92311 0.92919 0.91139 0.92486 0.84458 0.85539 0.90157 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.68 59.85 0.64 2.36 16 2 N -1.00 -21.35 3.23 -123.06 -0.40 -21.74 16 3 C 0.26 6.54 5.08 -5.20 -0.03 6.51 16 4 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 12 S 2.78 56.29 4.84 -107.50 -0.52 55.77 16 13 O -0.96 -23.07 15.64 -57.17 -0.89 -23.96 16 14 O -0.99 -20.52 13.48 -57.17 -0.77 -21.29 16 15 N -1.01 -15.45 1.92 -115.00 -0.22 -15.67 16 16 C 0.11 1.62 6.15 -4.43 -0.03 1.59 16 17 C -0.14 -1.51 5.45 -26.56 -0.14 -1.66 16 18 C -0.12 -1.36 5.75 -26.29 -0.15 -1.51 16 19 C -0.11 -1.44 5.40 -26.51 -0.14 -1.59 16 20 C -0.15 -1.64 5.09 -26.59 -0.14 -1.77 16 21 C 0.05 0.59 2.85 -67.63 -0.19 0.40 16 22 H 0.12 1.89 4.90 -51.93 -0.25 1.63 16 23 N -0.84 -8.58 9.26 -4.60 -0.04 -8.63 16 24 C 0.14 1.72 4.95 -4.13 -0.02 1.70 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 27 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 28 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.10 1.56 6.53 -51.93 -0.34 1.22 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.76 3.35 -51.93 -0.17 0.59 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.82 5.27 -51.93 -0.27 0.55 16 39 H 0.07 0.65 5.47 -51.93 -0.28 0.37 16 40 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.34 3.05 9.00 -39.29 -0.35 2.70 16 42 H 0.33 2.65 8.98 -39.29 -0.35 2.30 16 43 H 0.08 0.81 6.07 -51.93 -0.32 0.50 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -32.88 340.04 -9.48 -42.37 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.86 Total: 4.18 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.62 Total: -7.66 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: 0.08 Total: -71.50 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.66 Total: -45.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 56.29 SS G_CDS: -0.52 Total: 55.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.88 -9.48 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.335 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds