Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00068 * 2 1 4 4 C 1.50699 * 109.47623 * 275.00126 * 3 2 1 5 5 H 1.08003 * 119.99793 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00363 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99860 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00257 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47170 * 90.00408 * 8 6 4 10 10 H 1.48500 * 109.47032 * 210.00426 * 8 6 4 11 11 H 1.48501 * 109.46828 * 330.00182 * 8 6 4 12 12 S 1.65598 * 119.99903 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.40280 * 156.45835 * 12 2 1 14 14 O 1.42103 * 106.40535 * 23.53554 * 12 2 1 15 15 N 1.65598 * 107.21497 * 269.99559 * 12 2 1 16 16 C 1.45341 * 120.35814 * 269.72321 * 15 12 2 17 17 C 1.53445 * 108.41391 * 223.62311 * 16 15 12 18 18 C 1.52879 * 109.41551 * 77.73928 * 17 16 15 19 19 C 1.53964 * 109.71495 * 287.10496 * 18 17 16 20 20 C 1.52450 * 110.73529 * 315.64916 * 19 18 17 21 21 C 1.53804 * 109.41910 * 113.72641 * 20 19 18 22 22 H 1.09004 * 109.52248 * 42.03812 * 21 20 19 23 23 N 1.46901 * 109.56940 * 162.19275 * 21 20 19 24 24 C 1.46966 * 120.35546 * 90.00126 * 15 12 2 25 25 H 1.09000 * 109.46907 * 269.99451 * 1 2 3 26 26 H 1.09000 * 109.47234 * 29.99541 * 1 2 3 27 27 H 1.08997 * 109.47193 * 149.99801 * 1 2 3 28 28 H 1.09003 * 109.47148 * 35.00673 * 3 2 1 29 29 H 1.09002 * 109.47128 * 155.00391 * 3 2 1 30 30 H 0.97005 * 119.99825 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.67410 * 343.35380 * 16 15 12 32 32 H 1.08998 * 109.67958 * 103.88768 * 16 15 12 33 33 H 1.08999 * 109.48116 * 317.75297 * 17 16 15 34 34 H 1.09003 * 109.48984 * 197.72775 * 17 16 15 35 35 H 1.09005 * 109.43174 * 167.03264 * 18 17 16 36 36 H 1.08996 * 109.43540 * 47.18125 * 18 17 16 37 37 H 1.08995 * 109.22920 * 195.32367 * 19 18 17 38 38 H 1.09003 * 109.22391 * 75.97055 * 19 18 17 39 39 H 1.08996 * 109.47842 * 353.74433 * 20 19 18 40 40 H 1.09001 * 109.48868 * 233.71621 * 20 19 18 41 41 H 1.00894 * 111.00251 * 299.71813 * 23 21 20 42 42 H 1.00898 * 111.00130 * 63.67483 * 23 21 20 43 43 H 1.08999 * 109.53831 * 187.98377 * 24 15 12 44 44 H 1.09001 * 109.52979 * 308.14146 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6662 7 7 3.5025 3.6474 -0.6704 8 14 3.1776 3.5674 -3.4206 9 1 2.0167 4.4277 -3.7630 10 1 4.4307 4.3546 -3.5440 11 1 3.2268 2.4097 -4.3494 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5810 16 6 3.7359 -1.4258 2.2809 17 6 4.2829 -2.6120 3.0859 18 6 5.0197 -3.5670 2.1467 19 6 4.0023 -4.3290 1.2779 20 6 2.8309 -4.8182 2.1222 21 6 1.5491 -4.0850 1.6921 22 1 1.5159 -4.0170 0.6047 23 7 0.3744 -4.8239 2.1739 24 6 1.5498 -2.6840 2.2901 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6502 2.0042 0.5896 29 1 3.1858 1.1176 0.4343 30 1 3.9660 4.4811 -0.8469 31 1 4.4834 -1.0959 1.5594 32 1 3.4901 -0.6061 2.9561 33 1 3.4570 -3.1381 3.5647 34 1 4.9721 -2.2476 3.8478 35 1 5.5993 -4.2787 2.7347 36 1 5.6908 -2.9976 1.5038 37 1 4.4942 -5.1852 0.8164 38 1 3.6296 -3.6662 0.4969 39 1 3.0308 -4.6141 3.1741 40 1 2.7018 -5.8909 1.9782 41 1 0.3519 -5.7569 1.7906 42 1 0.3500 -4.8465 3.1823 43 1 1.8117 -2.7388 3.3468 44 1 0.5602 -2.2400 2.1824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601344969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = -92.981228 kcal Electronic energy + Delta-G solvation = -25799.293481 eV Core-core repulsion = 22298.471541 eV Total energy + Delta-G solvation = -3500.821940 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33137 -38.40240 -37.23326 -36.84720 -35.86573 -34.98754 -34.52354 -31.14781 -29.69570 -28.03491 -27.24083 -26.78608 -24.27378 -23.33096 -22.57481 -20.77257 -19.83916 -18.89138 -18.40509 -18.24340 -17.69547 -17.04824 -16.58386 -16.34248 -15.86855 -15.42248 -15.23713 -15.07364 -14.86279 -14.54348 -14.29858 -14.18696 -13.95068 -13.90647 -13.37910 -13.31872 -13.07504 -12.94909 -12.79479 -12.67799 -12.50832 -12.48312 -12.42243 -12.10496 -11.98759 -11.95208 -11.86542 -11.77246 -11.58226 -11.07448 -10.61706 -9.94783 -9.76434 -9.45671 -8.22887 -6.35211 -0.35165 1.36821 1.39042 1.49842 2.01853 2.37597 2.52693 3.07554 3.36584 3.54748 3.74446 3.90598 3.96235 3.98986 4.09756 4.13119 4.17092 4.42984 4.49715 4.61212 4.65786 4.71902 4.76298 4.80664 4.86363 4.90334 4.98905 5.03013 5.08673 5.14013 5.18157 5.21108 5.31952 5.38054 5.44449 5.52080 5.65310 5.73736 5.96141 6.08113 6.29998 6.72229 6.73794 7.33681 8.84677 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.022896 B = 0.005043 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.638593 B = 5550.681890 C = 6001.722659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.008 6.008 3 C 0.273 3.727 4 C -0.553 4.553 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.276 1.276 12 S 2.788 3.212 13 O -1.009 7.009 14 O -0.999 6.999 15 N -0.993 5.993 16 C 0.106 3.894 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.145 4.145 21 C 0.049 3.951 22 H 0.078 0.922 23 N -0.840 5.840 24 C 0.128 3.872 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.269 0.731 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.351 0.649 42 H 0.350 0.650 43 H 0.118 0.882 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -15.965 12.728 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.849 5.849 3 C 0.149 3.851 4 C -0.592 4.592 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.202 1.202 12 S 2.798 3.202 13 O -0.993 6.993 14 O -0.983 6.983 15 N -0.834 5.834 16 C -0.019 4.019 17 C -0.168 4.168 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.184 4.184 21 C -0.064 4.064 22 H 0.096 0.904 23 N -0.370 5.370 24 C 0.003 3.997 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.136 0.864 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.577 -15.696 11.633 19.706 hybrid contribution 0.920 0.347 -0.670 1.190 sum -1.656 -15.349 10.964 18.935 Atomic orbital electron populations 1.21542 0.78256 1.03378 1.02367 1.57619 1.15705 1.22236 1.89337 1.18588 0.90286 0.80301 0.95884 1.21805 1.36539 1.06782 0.94063 0.93443 1.25727 0.94633 0.96615 1.01544 1.70001 1.37694 1.15685 1.32747 0.85600 0.78362 0.78309 0.79744 1.18832 1.20006 1.20150 1.01597 0.72294 0.72313 0.73957 1.93543 1.42799 1.85548 1.77417 1.93469 1.67402 1.59430 1.78007 1.57609 1.29878 1.64550 1.31347 1.21528 0.85468 0.98329 0.96583 1.22232 1.01562 0.95198 0.97815 1.21790 0.97376 0.98569 0.98052 1.21680 0.97184 0.99128 0.98131 1.22593 0.94405 0.99978 1.01411 1.22375 0.88986 0.93895 1.01175 0.90438 1.58700 1.41566 1.22301 1.14471 1.21410 0.90684 0.89114 0.98471 0.91039 0.91158 0.90916 0.95464 0.96638 0.92247 0.91799 0.90690 0.88281 0.88700 0.89438 0.93484 0.91780 0.96630 0.88706 0.90963 0.83532 0.83644 0.86434 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.23 10.68 127.77 1.36 4.60 16 2 N -1.01 -44.23 3.23 -543.24 -1.75 -45.99 16 3 C 0.27 14.38 5.08 85.63 0.43 14.82 16 4 C -0.55 -32.41 9.38 25.60 0.24 -32.17 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.84 5.46 84.65 0.46 1.31 16 7 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 8 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 S 2.79 116.86 4.84 -56.49 -0.27 116.59 16 13 O -1.01 -51.29 15.64 -128.00 -2.00 -53.30 16 14 O -1.00 -42.61 13.48 -128.00 -1.73 -44.34 16 15 N -0.99 -30.14 1.92 -517.76 -0.99 -31.14 16 16 C 0.11 2.93 6.15 86.75 0.53 3.47 16 17 C -0.13 -2.44 5.45 30.70 0.17 -2.27 16 18 C -0.12 -2.56 5.75 30.88 0.18 -2.38 16 19 C -0.12 -2.98 5.40 30.74 0.17 -2.81 16 20 C -0.14 -2.66 5.09 30.68 0.16 -2.51 16 21 C 0.05 1.13 2.85 44.97 0.13 1.26 16 22 H 0.08 2.49 4.90 -2.38 -0.01 2.48 16 23 N -0.84 -14.99 9.26 -168.46 -1.56 -16.55 16 24 C 0.13 2.97 4.95 86.07 0.43 3.40 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 27 H 0.07 2.50 7.02 -2.39 -0.02 2.48 16 28 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 29 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 30 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 31 H 0.06 2.19 6.53 -2.38 -0.02 2.17 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 1.45 3.35 -2.39 -0.01 1.45 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.05 1.20 7.87 -2.39 -0.02 1.19 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.01 0.48 5.27 -2.39 -0.01 0.47 16 39 H 0.09 1.29 5.47 -2.39 -0.01 1.28 16 40 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 41 H 0.35 5.39 9.00 -89.70 -0.81 4.59 16 42 H 0.35 4.26 8.98 -89.70 -0.81 3.45 16 43 H 0.12 1.87 6.07 -2.39 -0.01 1.85 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -74.00 340.04 -2.33 -76.32 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.59 Total: 18.56 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.26 Total: -13.30 kcal Atomic # 7 Polarization: -144.00 SS G_CDS: -4.02 Total: -148.02 kcal Atomic # 8 Polarization: -93.91 SS G_CDS: -3.73 Total: -97.63 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 116.86 SS G_CDS: -0.27 Total: 116.59 kcal Total: -74.00 -2.33 -76.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601344969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.661 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds