Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36733 * 127.13646 * 2 1 4 4 C 1.50699 * 126.34767 * 359.97249 * 3 2 1 5 5 C 1.52992 * 109.47382 * 89.99642 * 4 3 2 6 6 C 1.52997 * 117.50214 * 243.62134 * 5 4 3 7 7 C 1.52993 * 60.00447 * 252.51021 * 6 5 4 8 8 N 1.30301 * 107.30743 * 179.83878 * 3 2 1 9 9 N 1.28527 * 110.04869 * 0.44376 * 8 3 2 10 10 C 1.31223 * 109.86204 * 359.72045 * 9 8 3 11 11 N 1.38578 * 126.47284 * 179.97438 * 10 9 8 12 12 C 1.46949 * 111.00043 * 123.82048 * 11 10 9 13 13 C 1.53049 * 109.36441 * 176.81216 * 12 11 10 14 14 N 1.46956 * 109.36582 * 58.40280 * 13 12 11 15 15 C 1.46908 * 110.99870 * 176.81202 * 14 13 12 16 16 C 1.50696 * 109.47271 * 58.97903 * 15 14 13 17 17 H 1.08003 * 119.99921 * 5.00689 * 16 15 14 18 18 C 1.37869 * 120.00300 * 185.00931 * 16 15 14 19 19 N 1.31518 * 119.99841 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00423 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47047 * 59.99669 * 20 18 16 22 22 H 1.48492 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46956 * 299.99843 * 20 18 16 24 24 C 1.46958 * 110.87877 * 300.67781 * 14 13 12 25 25 C 1.46956 * 111.00073 * 0.02562 * 11 10 9 26 26 H 1.09000 * 109.46891 * 269.70680 * 1 2 3 27 27 H 1.09000 * 109.47295 * 149.70936 * 1 2 3 28 28 H 1.08999 * 109.47548 * 29.70506 * 1 2 3 29 29 H 1.09009 * 109.47217 * 210.00005 * 4 3 2 30 30 H 1.09003 * 109.46881 * 329.99347 * 4 3 2 31 31 H 1.09003 * 115.55128 * 29.33324 * 5 4 3 32 32 H 1.09000 * 117.49802 * 0.02562 * 6 5 4 33 33 H 1.08997 * 117.50105 * 145.01892 * 6 5 4 34 34 H 1.08996 * 117.50089 * 252.51185 * 7 6 5 35 35 H 1.09004 * 117.52048 * 107.47817 * 7 6 5 36 36 H 1.09000 * 109.49165 * 296.77736 * 12 11 10 37 37 H 1.08999 * 109.48993 * 56.84448 * 12 11 10 38 38 H 1.09004 * 109.48894 * 298.43245 * 13 12 11 39 39 H 1.09005 * 109.48998 * 178.36992 * 13 12 11 40 40 H 1.09002 * 109.46440 * 178.98033 * 15 14 13 41 41 H 1.08998 * 109.46808 * 298.97765 * 15 14 13 42 42 H 0.97005 * 119.99986 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.48810 * 299.35684 * 24 14 13 44 44 H 1.08995 * 109.48562 * 179.28630 * 24 14 13 45 45 H 1.09005 * 109.48767 * 303.15703 * 25 11 10 46 46 H 1.09004 * 109.49462 * 63.19599 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.0900 0.0000 4 6 1.8620 2.5348 -0.0006 5 6 1.7164 3.0242 1.4416 6 6 0.3220 3.4496 1.9060 7 6 1.4004 4.5058 1.6565 8 7 3.5162 0.6480 0.0035 9 7 3.5211 -0.6372 -0.0037 10 6 2.2887 -1.0878 -0.0062 11 7 1.8977 -2.4172 -0.0141 12 6 1.0167 -2.7138 1.1241 13 6 0.5445 -4.1669 1.0351 14 7 1.7121 -5.0593 1.0301 15 6 1.2975 -6.4686 1.0217 16 6 0.4536 -6.7368 -0.1976 17 1 0.3127 -5.9629 -0.9377 18 6 -0.1387 -7.9700 -0.3685 19 7 0.0332 -8.9125 0.5324 20 14 -1.1843 -8.3026 -1.8803 21 1 -0.3576 -8.1293 -3.1018 22 1 -1.7029 -9.6930 -1.8274 23 1 -2.3229 -7.3501 -1.9140 24 6 2.5931 -4.7627 -0.1081 25 6 3.0653 -3.3096 -0.0190 26 1 -0.3633 -0.0053 1.0277 27 1 -0.3634 -0.8874 -0.5183 28 1 -0.3634 0.8926 -0.5092 29 1 2.6123 3.1361 -0.5143 30 1 0.9057 2.6300 -0.5149 31 1 2.3632 2.5367 2.1711 32 1 -0.4917 3.3803 1.1841 33 1 0.0511 3.2417 2.9411 34 1 1.8389 4.9928 2.5274 35 1 1.2966 5.1319 0.7702 36 1 1.5633 -2.5655 2.0554 37 1 0.1535 -2.0488 1.0988 38 1 -0.0254 -4.3085 0.1168 39 1 -0.0859 -4.3977 1.8939 40 1 2.1808 -7.1070 0.9999 41 1 0.7172 -6.6819 1.9194 42 1 -0.3838 -9.7801 0.4124 43 1 2.0465 -4.9110 -1.0393 44 1 3.4563 -5.4278 -0.0827 45 1 3.6957 -3.0788 -0.8778 46 1 3.6354 -3.1677 0.8992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601860714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = 104.376958 kcal Electronic energy + Delta-G solvation = -25465.492427 eV Core-core repulsion = 22005.910474 eV Total energy + Delta-G solvation = -3459.581953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.04654 -40.37436 -38.47099 -37.02309 -35.91380 -34.50038 -32.41949 -32.02505 -30.02969 -28.46072 -28.10146 -26.71528 -24.75079 -23.86592 -23.21490 -22.48423 -22.30703 -21.22705 -20.73823 -18.64919 -18.31840 -17.44273 -17.34124 -16.80810 -16.69764 -15.96169 -15.93716 -15.77773 -15.29584 -15.05815 -14.91096 -14.62676 -14.28121 -14.09152 -13.83873 -13.71918 -13.34432 -12.97794 -12.90307 -12.63538 -12.59121 -12.48521 -12.32958 -12.30094 -12.25397 -11.92319 -11.85590 -11.56287 -11.49161 -11.31700 -11.14367 -10.87848 -10.77610 -10.59703 -9.29948 -9.08316 -8.15340 -6.34300 0.72363 1.24220 1.38531 1.40023 1.47864 1.75522 2.38122 2.59640 2.87474 3.10368 3.26465 3.35723 3.62244 3.76213 3.84982 3.87166 4.00840 4.03654 4.13768 4.21738 4.28465 4.30481 4.34124 4.37977 4.48770 4.58453 4.63385 4.74124 4.78325 4.81336 4.85800 4.97344 5.02478 5.03083 5.07957 5.14432 5.21283 5.29030 5.32100 5.33450 5.53165 5.60637 5.74526 6.00299 6.14716 6.22960 6.42608 6.85002 7.37230 7.73126 8.87546 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.026036 B = 0.002980 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.175148 B = 9392.449940 C = 9732.379284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.477 5.477 3 C 0.189 3.811 4 C 0.009 3.991 5 C -0.165 4.165 6 C -0.172 4.172 7 C -0.165 4.165 8 N -0.326 5.326 9 N -0.362 5.362 10 C 0.357 3.643 11 N -0.452 5.452 12 C 0.068 3.932 13 C 0.069 3.931 14 N -0.546 5.546 15 C 0.202 3.798 16 C -0.555 4.555 17 H 0.059 0.941 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.068 3.932 25 C 0.092 3.908 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.004 0.996 41 H 0.012 0.988 42 H 0.265 0.735 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 26.163 0.097 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.172 5.172 3 C -0.080 4.080 4 C -0.030 4.030 5 C -0.185 4.185 6 C -0.209 4.209 7 C -0.202 4.202 8 N -0.165 5.165 9 N -0.207 5.207 10 C -0.001 4.001 11 N -0.176 5.176 12 C -0.059 4.059 13 C -0.059 4.059 14 N -0.270 5.270 15 C 0.075 3.925 16 C -0.594 4.594 17 H 0.077 0.923 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.061 4.061 25 C -0.035 4.035 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.307 25.931 0.164 26.034 hybrid contribution -1.599 -1.206 -0.656 2.107 sum -3.905 24.725 -0.492 25.036 Atomic orbital electron populations 1.22519 0.72964 1.06755 1.05543 1.46209 1.09948 1.04550 1.56506 1.25259 0.86129 0.92716 1.03915 1.19737 1.03961 0.82710 0.96572 1.22043 1.00956 0.99440 0.96024 1.23197 0.91736 1.02994 1.02968 1.23071 1.02421 0.90510 1.04212 1.73859 1.19596 1.02781 1.20267 1.74530 1.17014 1.03952 1.25214 1.22762 0.86964 0.87952 1.02378 1.58877 1.19563 0.96654 1.42549 1.22457 0.96259 0.97595 0.89543 1.21931 0.92693 0.89886 1.01429 1.62647 1.17530 1.05522 1.41316 1.19394 0.93938 0.83856 0.95278 1.21916 1.31321 0.98440 1.07728 0.92316 1.25786 0.97630 0.96015 0.99189 1.70057 1.45252 1.04800 1.36430 0.85641 0.79191 0.77298 0.79759 1.19856 1.20935 1.19152 1.21969 0.97048 0.93999 0.93067 1.21984 0.89269 0.90026 1.02229 0.88342 0.88938 0.85943 0.87482 0.86907 0.90089 0.86764 0.88943 0.88575 0.86942 0.93729 0.87391 0.94321 0.90221 0.97746 0.96941 0.92611 0.94856 0.90518 0.89424 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 9.31 127.77 1.19 2.00 16 2 N -0.48 -10.93 3.21 -538.19 -1.73 -12.65 16 3 C 0.19 4.44 7.28 137.64 1.00 5.44 16 4 C 0.01 0.13 5.87 29.85 0.18 0.30 16 5 C -0.17 -2.13 5.72 -10.80 -0.06 -2.19 16 6 C -0.17 -1.46 10.18 30.59 0.31 -1.15 16 7 C -0.17 -1.44 10.25 30.59 0.31 -1.13 16 8 N -0.33 -10.64 12.18 -49.54 -0.60 -11.24 16 9 N -0.36 -12.98 11.30 -58.00 -0.66 -13.64 16 10 C 0.36 11.06 7.22 260.11 1.88 12.94 16 11 N -0.45 -14.33 4.75 -705.56 -3.35 -17.68 16 12 C 0.07 1.98 5.42 86.31 0.47 2.45 16 13 C 0.07 2.51 5.24 86.31 0.45 2.97 16 14 N -0.55 -23.06 4.92 -900.27 -4.43 -27.49 16 15 C 0.20 10.36 5.14 85.55 0.44 10.80 16 16 C -0.56 -29.81 7.66 25.60 0.20 -29.62 16 17 H 0.06 3.10 5.82 -2.91 -0.02 3.09 16 18 C 0.01 0.74 5.46 84.65 0.46 1.20 16 19 N -0.93 -54.13 13.29 21.44 0.28 -53.85 16 20 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.07 2.66 5.32 86.31 0.46 3.12 16 25 C 0.09 3.17 4.99 86.31 0.43 3.60 16 26 H 0.10 0.94 7.80 -2.39 -0.02 0.93 16 27 H 0.09 1.33 7.63 -2.39 -0.02 1.31 16 28 H 0.12 0.74 7.24 -2.39 -0.02 0.72 16 29 H 0.11 1.36 8.14 -2.38 -0.02 1.35 16 30 H 0.11 0.80 7.00 -2.39 -0.02 0.79 16 31 H 0.08 1.50 8.07 -2.39 -0.02 1.48 16 32 H 0.11 0.55 8.03 -2.39 -0.02 0.53 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 2.38 5.32 -2.39 -0.01 2.37 16 38 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 39 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.00 0.25 8.12 -2.39 -0.02 0.23 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 43 H 0.03 1.41 6.78 -2.39 -0.02 1.40 16 44 H 0.08 2.99 8.12 -2.39 -0.02 2.97 16 45 H 0.09 2.96 8.02 -2.38 -0.02 2.95 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.67 363.55 0.23 -70.44 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.97 Total: 10.44 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 7.72 Total: 10.73 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -10.48 Total: -136.55 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.67 0.23 -70.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601860714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.818 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds