Wall clock time and date at job start Fri Apr 10 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00567 * 2 1 4 4 C 1.52994 * 109.47439 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46716 * 66.28810 * 4 3 2 6 6 C 1.36937 * 120.00043 * 272.42513 * 5 4 3 7 7 H 1.07995 * 120.00193 * 142.27087 * 6 5 4 8 8 C 1.38810 * 120.00071 * 322.27063 * 6 5 4 9 9 N 1.31620 * 120.00233 * 156.01241 * 8 6 5 10 10 Si 1.86803 * 120.00267 * 336.01310 * 8 6 5 11 11 H 1.48501 * 109.47421 * 95.12605 * 10 8 6 12 12 H 1.48501 * 109.47524 * 215.12781 * 10 8 6 13 13 H 1.48500 * 109.46827 * 335.12652 * 10 8 6 14 14 S 1.65600 * 120.00036 * 92.43455 * 5 4 3 15 15 O 1.42100 * 106.40492 * 156.45844 * 14 5 4 16 16 O 1.42099 * 106.40521 * 23.53191 * 14 5 4 17 17 C 1.76206 * 107.21583 * 269.99469 * 14 5 4 18 18 C 1.35137 * 127.24740 * 89.69992 * 17 14 5 19 19 C 1.37801 * 114.75921 * 180.26480 * 18 17 14 20 20 C 1.50708 * 121.56151 * 180.02562 * 19 18 17 21 21 N 1.30082 * 116.88504 * 0.02562 * 19 18 17 22 22 S 1.69603 * 107.14653 * 0.02562 * 21 19 18 23 23 H 1.08998 * 109.47563 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47190 * 300.00355 * 1 2 3 25 25 H 1.09005 * 109.47369 * 59.99702 * 1 2 3 26 26 H 1.09001 * 109.46933 * 59.99883 * 3 2 1 27 27 H 1.09000 * 109.46853 * 300.00371 * 3 2 1 28 28 H 1.08997 * 109.47348 * 306.28758 * 4 3 2 29 29 H 1.08999 * 109.47189 * 186.28737 * 4 3 2 30 30 H 0.96997 * 119.99808 * 180.02562 * 9 8 6 31 31 H 1.08003 * 122.62052 * 0.25264 * 18 17 14 32 32 H 1.08992 * 109.47480 * 269.97994 * 20 19 18 33 33 H 1.09005 * 109.46811 * 29.97778 * 20 19 18 34 34 H 1.09002 * 109.47045 * 149.97650 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9788 0.5920 -1.2638 6 6 4.0524 -0.7692 -1.3934 7 1 3.7753 -1.2387 -2.3256 8 6 4.4832 -1.5457 -0.3265 9 7 4.1284 -2.8107 -0.2476 10 14 5.5666 -0.7954 0.9975 11 1 4.7212 -0.3428 2.1313 12 1 6.5367 -1.8118 1.4783 13 1 6.3034 0.3649 0.4353 14 16 4.3912 1.5684 -2.5361 15 8 5.2634 0.8071 -3.3600 16 8 4.7491 2.8252 -1.9780 17 6 2.9281 1.8415 -3.4794 18 6 2.0248 2.8337 -3.3189 19 6 0.9668 2.7992 -4.2013 20 6 -0.1292 3.8328 -4.1595 21 7 0.9582 1.8327 -5.0719 22 16 2.3442 0.8959 -4.7927 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8493 0.5497 0.8292 29 1 3.9783 2.1741 0.1132 30 1 4.4291 -3.3532 0.4982 31 1 2.1241 3.5941 -2.5584 32 1 -0.9223 3.4947 -3.4928 33 1 0.2753 4.7766 -3.7937 34 1 -0.5330 3.9748 -5.1620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601961012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:40 Heat of formation + Delta-G solvation = -55.285191 kcal Electronic energy + Delta-G solvation = -22219.094675 eV Core-core repulsion = 18793.275377 eV Total energy + Delta-G solvation = -3425.819298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 306.054 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.00487 -37.60210 -36.31790 -35.48605 -34.95030 -31.97337 -31.53502 -29.68601 -29.08938 -25.88335 -24.20219 -23.80643 -22.28537 -19.82257 -18.92690 -18.10787 -17.23965 -16.81129 -16.35323 -15.72818 -15.53265 -14.91831 -14.68320 -14.44036 -14.27169 -14.10728 -13.06764 -12.93694 -12.87865 -12.66810 -12.60102 -12.16193 -12.11965 -11.72307 -11.52752 -11.26828 -11.18966 -10.93143 -10.89530 -10.84189 -10.67049 -10.36993 -10.11954 -9.96880 -9.93936 -9.11841 -8.90860 -8.48427 -8.13499 -6.39284 -3.92580 0.41365 1.12793 1.56590 1.95886 2.34457 3.12232 3.29014 3.33942 3.89820 4.23216 4.37004 4.43887 4.70498 4.93566 5.07549 5.16824 5.24950 5.39571 5.51757 5.54538 5.58970 5.70609 5.73081 5.77200 5.81664 5.93773 5.99927 6.08520 6.38861 6.61507 6.88296 7.67654 7.80305 8.26469 9.05900 9.14520 10.70082 Molecular weight = 306.05amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.007362 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.864945 B = 3802.522879 C = 4338.455878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.048 3.952 4 C 0.113 3.887 5 N -0.855 5.855 6 C -0.265 4.265 7 H 0.106 0.894 8 C 0.080 3.920 9 N -0.842 5.842 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.262 1.262 14 S 2.635 3.365 15 O -0.952 6.952 16 O -0.990 6.990 17 C -0.740 4.740 18 C -0.087 4.087 19 C 0.090 3.910 20 C -0.082 4.082 21 N -0.459 5.459 22 S 0.393 5.607 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.275 0.725 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 10.036 -1.251 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.031 4.031 4 C -0.014 4.014 5 N -0.687 5.687 6 C -0.405 4.405 7 H 0.124 0.876 8 C -0.131 4.131 9 N -0.479 5.479 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.187 1.187 14 S 2.731 3.269 15 O -0.942 6.942 16 O -0.979 6.979 17 C -0.949 4.949 18 C -0.126 4.126 19 C -0.087 4.087 20 C -0.144 4.144 21 N -0.285 5.285 22 S 0.551 5.449 23 H 0.100 0.900 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.596 8.670 -3.146 11.948 hybrid contribution -0.261 1.773 1.912 2.620 sum -7.857 10.443 -1.234 13.127 Atomic orbital electron populations 1.22667 0.83337 1.02192 0.98453 1.88300 1.17259 1.25830 1.94870 1.23047 0.95346 0.85823 0.98913 1.21636 0.91921 0.98956 0.88918 1.52890 1.77460 1.15139 1.23165 1.18616 1.41449 0.77216 1.03216 0.87646 1.25315 0.95303 0.94705 0.97808 1.69830 1.39904 1.07205 1.30994 0.87134 0.81511 0.79972 0.82105 1.19827 1.21260 1.18667 1.05917 0.72426 0.73495 0.75071 1.93485 1.60080 1.70696 1.69929 1.93412 1.80917 1.46318 1.77282 1.37491 1.28407 1.09294 1.19736 1.20923 0.91876 0.98881 1.00889 1.21616 0.97796 0.96297 0.92973 1.20543 0.94896 0.95109 1.03818 1.76337 1.17342 1.09729 1.25109 1.83951 1.11797 1.28083 1.21105 0.90025 0.95248 0.95223 0.93597 0.94160 0.89994 0.89072 0.91512 0.81913 0.90007 0.90040 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.35 -6.87 10.11 -35.23 -0.36 -7.23 16 3 C 0.05 0.83 6.28 37.15 0.23 1.07 16 4 C 0.11 2.26 4.99 -4.04 -0.02 2.24 16 5 N -0.85 -19.53 2.45 -59.91 -0.15 -19.67 16 6 C -0.27 -6.85 8.74 -15.06 -0.13 -6.98 16 7 H 0.11 2.89 8.06 -52.49 -0.42 2.46 16 8 C 0.08 2.11 5.29 -17.43 -0.09 2.02 16 9 N -0.84 -23.06 13.97 55.49 0.78 -22.28 16 10 Si 0.87 20.19 25.18 -169.99 -4.28 15.91 16 11 H -0.27 -5.94 6.64 56.52 0.38 -5.56 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 14 S 2.64 57.69 5.82 -107.50 -0.63 57.06 16 15 O -0.95 -23.48 17.19 -57.17 -0.98 -24.47 16 16 O -0.99 -21.78 16.47 -57.17 -0.94 -22.72 16 17 C -0.74 -13.80 6.58 29.63 0.19 -13.61 16 18 C -0.09 -1.35 8.69 -40.84 -0.35 -1.71 16 19 C 0.09 1.29 6.71 -83.49 -0.56 0.73 16 20 C -0.08 -0.79 10.27 36.01 0.37 -0.42 16 21 N -0.46 -7.52 12.05 32.02 0.39 -7.13 16 22 S 0.39 7.02 23.67 -107.50 -2.54 4.48 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.64 6.93 -51.93 -0.36 0.28 16 28 H 0.08 1.74 3.30 -51.93 -0.17 1.57 16 29 H 0.09 1.63 6.96 -51.93 -0.36 1.26 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -31.19 314.91 -7.08 -38.27 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.86 Total: -1.88 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 0.75 Total: -15.07 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 1.01 Total: -49.09 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -2.28 Total: -54.41 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.28 Total: 15.91 kcal Atomic # 16 Polarization: 64.71 SS G_CDS: -3.17 Total: 61.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.19 -7.08 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601961012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.015 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds