Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30832 * 125.96032 * 2 1 4 4 C 1.33244 * 109.82480 * 180.12617 * 3 2 1 5 5 C 1.50705 * 125.52385 * 179.86095 * 4 3 2 6 6 N 1.46908 * 109.46903 * 269.71855 * 5 4 3 7 7 C 1.46955 * 111.00021 * 170.00112 * 6 5 4 8 8 C 1.53049 * 109.36213 * 183.18576 * 7 6 5 9 9 N 1.46951 * 109.36447 * 301.59458 * 8 7 6 10 10 C 1.46907 * 111.00042 * 183.19053 * 9 8 7 11 11 C 1.52996 * 109.47018 * 73.77620 * 10 9 8 12 12 C 1.50703 * 115.54893 * 292.64434 * 11 10 9 13 13 H 1.07998 * 119.99870 * 143.52224 * 12 11 10 14 14 C 1.37876 * 120.00028 * 323.51719 * 12 11 10 15 15 N 1.31515 * 120.00095 * 340.05348 * 14 12 11 16 16 Si 1.86797 * 119.99859 * 160.04608 * 14 12 11 17 17 H 1.48495 * 109.47007 * 60.00303 * 16 14 12 18 18 H 1.48501 * 109.47102 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47139 * 300.00466 * 16 14 12 20 20 C 1.52998 * 117.49649 * 146.97476 * 11 10 9 21 21 C 1.53001 * 117.49724 * 78.31612 * 11 10 9 22 22 C 1.46958 * 110.88121 * 59.32249 * 9 8 7 23 23 C 1.46962 * 110.99430 * 293.79814 * 6 5 4 24 24 N 1.30708 * 108.94985 * 359.59439 * 4 3 2 25 25 N 1.34433 * 125.96051 * 179.67988 * 2 1 3 26 26 H 0.97002 * 126.82498 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.46778 * 270.29980 * 1 2 3 28 28 H 1.09003 * 109.47194 * 30.30466 * 1 2 3 29 29 H 1.08998 * 109.46998 * 150.29993 * 1 2 3 30 30 H 1.08994 * 109.47149 * 149.71587 * 5 4 3 31 31 H 1.09001 * 109.47435 * 29.71188 * 5 4 3 32 32 H 1.09004 * 109.48503 * 303.15156 * 7 6 5 33 33 H 1.08999 * 109.49183 * 63.21837 * 7 6 5 34 34 H 1.08998 * 109.48940 * 61.56620 * 8 7 6 35 35 H 1.09003 * 109.48967 * 181.63016 * 8 7 6 36 36 H 1.09005 * 109.46679 * 193.77501 * 10 9 8 37 37 H 1.08993 * 109.47143 * 313.77242 * 10 9 8 38 38 H 0.97000 * 120.00078 * 185.16081 * 15 14 12 39 39 H 1.09005 * 117.50318 * 359.97438 * 20 11 10 40 40 H 1.09002 * 117.49732 * 145.02080 * 20 11 10 41 41 H 1.09004 * 117.49442 * 214.97494 * 21 11 10 42 42 H 1.08996 * 117.50335 * 359.97254 * 21 11 10 43 43 H 1.09007 * 109.49274 * 180.70867 * 22 9 8 44 44 H 1.09005 * 109.50417 * 60.65614 * 22 9 8 45 45 H 1.09004 * 109.48858 * 296.77544 * 23 6 5 46 46 H 1.08995 * 109.49146 * 56.82517 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0028 5 6 4.7373 1.6236 -0.0066 6 7 5.1221 1.9205 -1.3930 7 6 6.1112 3.0062 -1.4439 8 6 6.4254 3.3382 -2.9045 9 7 6.9329 2.1355 -3.5793 10 6 7.3178 2.4323 -4.9656 11 6 8.6264 3.2249 -4.9729 12 6 8.5458 4.6179 -4.4035 13 1 9.3725 5.0176 -3.8350 14 6 7.4167 5.3822 -4.6086 15 7 6.5937 5.0890 -5.5916 16 14 7.0558 6.8339 -3.4899 17 1 8.1705 7.8115 -3.5724 18 1 5.7921 7.4862 -3.9175 19 1 6.9175 6.3578 -2.0901 20 6 9.5855 2.9941 -6.1424 21 6 9.9251 2.4463 -4.7540 22 6 5.9439 1.0497 -3.5283 23 6 5.6295 0.7176 -2.0677 24 7 3.6194 -0.6168 0.0042 25 7 2.2964 -1.0881 0.0061 26 1 2.0094 -2.0147 0.0116 27 1 -0.3633 0.0054 1.0277 28 1 -0.3634 0.8873 -0.5186 29 1 -0.3633 -0.8926 -0.5092 30 1 5.5740 1.1535 0.5100 31 1 4.4699 2.5496 0.5024 32 1 5.7073 3.8895 -0.9489 33 1 7.0238 2.6909 -0.9382 34 1 5.5183 3.6796 -3.4032 35 1 7.1804 4.1235 -2.9447 36 1 7.4550 1.4993 -5.5123 37 1 6.5339 3.0208 -5.4422 38 1 5.8404 5.6694 -5.7829 39 1 9.2844 2.2773 -6.9064 40 1 10.1585 3.8498 -6.4997 41 1 10.7214 2.9418 -4.1985 42 1 9.8473 1.3694 -4.6043 43 1 6.3476 0.1664 -4.0233 44 1 5.0311 1.3647 -4.0342 45 1 6.5367 0.3763 -1.5691 46 1 4.8748 -0.0677 -2.0273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602803074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = 138.842603 kcal Electronic energy + Delta-G solvation = -25950.734970 eV Core-core repulsion = 22492.647560 eV Total energy + Delta-G solvation = -3458.087410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.22553 -38.74145 -36.70501 -34.45664 -32.80806 -32.46469 -32.31868 -30.14526 -28.98032 -27.82388 -25.78567 -25.25349 -22.77806 -22.60251 -21.45598 -20.97590 -20.26861 -19.03685 -18.94236 -17.94146 -16.29965 -15.97475 -15.25324 -14.90197 -14.85387 -14.61287 -14.16688 -14.05361 -13.90609 -13.45949 -13.38923 -13.05844 -13.02646 -12.63996 -12.49159 -12.01240 -11.95255 -11.68058 -11.39571 -10.97118 -10.93636 -10.69994 -10.53509 -10.37263 -10.25674 -10.13050 -10.07420 -10.01666 -9.85261 -9.55521 -9.16420 -8.92965 -8.56033 -8.01627 -7.98835 -7.12010 -6.06772 -3.99666 1.46010 2.49219 2.76325 3.27085 3.35160 3.37332 3.83617 4.30302 4.33904 4.54598 4.63814 4.81645 5.03571 5.08807 5.08828 5.40882 5.47104 5.55539 5.61831 5.71428 5.74551 5.88722 5.99793 6.11192 6.15694 6.17403 6.24632 6.33061 6.40345 6.49860 6.52532 6.73939 6.83156 6.87606 6.90150 6.95742 7.06761 7.24593 7.30687 7.34844 7.46982 7.51067 7.57501 7.95140 8.04365 8.26728 8.31144 8.52477 8.90318 9.47214 10.92523 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.003904 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.001889 B = 7171.295224 C = 7929.695017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.277 3.723 3 N -0.525 5.525 4 C 0.250 3.750 5 C 0.144 3.856 6 N -0.532 5.532 7 C 0.058 3.942 8 C 0.045 3.955 9 N -0.524 5.524 10 C 0.087 3.913 11 C 0.065 3.935 12 C -0.491 4.491 13 H 0.061 0.939 14 C 0.079 3.921 15 N -0.867 5.867 16 Si 0.871 3.129 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.205 4.205 21 C -0.199 4.199 22 C 0.057 3.943 23 C 0.064 3.936 24 N -0.314 5.314 25 N -0.487 5.487 26 H 0.437 0.563 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.134 0.866 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.040 0.960 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -10.770 10.526 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 N -0.254 5.254 4 C -0.034 4.034 5 C 0.014 3.986 6 N -0.258 5.258 7 C -0.070 4.070 8 C -0.083 4.083 9 N -0.248 5.248 10 C -0.040 4.040 11 C 0.065 3.935 12 C -0.528 4.528 13 H 0.080 0.920 14 C -0.125 4.125 15 N -0.503 5.503 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.244 4.244 21 C -0.236 4.236 22 C -0.072 4.072 23 C -0.064 4.064 24 N -0.144 5.144 25 N -0.205 5.205 26 H 0.282 0.718 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.151 0.849 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.058 0.942 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.700 -10.743 10.476 18.430 hybrid contribution -0.635 -0.060 0.423 0.766 sum -11.336 -10.803 10.899 19.078 Atomic orbital electron populations 1.20370 0.83807 1.05006 1.04342 1.24427 0.96618 0.82940 0.96200 1.70382 1.01504 1.29235 1.24298 1.24116 0.93281 0.89653 0.96312 1.20295 0.90288 0.96235 0.91785 1.62130 1.42417 1.08463 1.12810 1.22369 0.92272 0.92617 0.99698 1.22870 1.00794 0.94606 0.89997 1.62063 1.37620 1.07058 1.18097 1.21725 0.99472 0.96194 0.86638 1.18791 0.86086 0.93663 0.95005 1.20429 1.01177 0.97631 1.33550 0.92036 1.24944 0.96065 0.96768 0.94697 1.69900 1.16429 1.37517 1.26426 0.87042 0.77983 0.82828 0.82439 1.20185 1.21017 1.19175 1.22953 1.08763 1.01683 0.90987 1.22742 1.03034 0.97879 0.99988 1.22073 0.94605 0.95856 0.94657 1.22142 0.97846 0.91454 0.95008 1.78026 0.96497 1.12611 1.27222 1.47983 1.04467 1.09873 1.58216 0.71768 0.89161 0.88291 0.90019 0.92487 0.88188 0.91064 0.94108 0.95167 0.84882 0.95126 0.89681 0.92612 0.92132 0.90652 0.91151 0.91537 0.91663 0.95316 0.94207 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.28 3.00 8.24 -155.69 -1.28 1.72 16 3 N -0.52 -7.79 11.19 -8.16 -0.09 -7.88 16 4 C 0.25 3.83 6.79 -156.85 -1.06 2.76 16 5 C 0.14 2.18 5.59 -4.97 -0.03 2.16 16 6 N -0.53 -9.40 4.70 -235.90 -1.11 -10.51 16 7 C 0.06 1.09 5.61 -3.77 -0.02 1.07 16 8 C 0.04 1.00 4.14 -3.77 -0.02 0.98 16 9 N -0.52 -11.49 4.65 -234.46 -1.09 -12.58 16 10 C 0.09 2.06 4.72 -3.82 -0.02 2.04 16 11 C 0.07 1.61 1.92 -155.66 -0.30 1.32 16 12 C -0.49 -12.93 7.06 -34.44 -0.24 -13.18 16 13 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 14 C 0.08 2.05 3.20 -17.82 -0.06 2.00 16 15 N -0.87 -23.36 11.10 55.43 0.62 -22.74 16 16 Si 0.87 20.07 28.28 -169.99 -4.81 15.27 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.21 -4.78 9.92 -26.69 -0.26 -5.04 16 21 C -0.20 -4.48 9.96 -26.69 -0.27 -4.74 16 22 C 0.06 1.11 5.58 -3.77 -0.02 1.09 16 23 C 0.06 1.12 5.44 -3.76 -0.02 1.10 16 24 N -0.31 -4.50 11.96 32.42 0.39 -4.11 16 25 N -0.49 -5.08 7.45 32.62 0.24 -4.84 16 26 H 0.44 2.78 8.96 -182.33 -1.63 1.14 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 31 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.13 3.24 2.91 -51.93 -0.15 3.09 16 36 H 0.03 0.69 7.82 -51.93 -0.41 0.29 16 37 H 0.09 2.25 5.57 -51.93 -0.29 1.96 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -30.62 359.12 -12.36 -42.98 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.69 Total: 5.80 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -3.22 Total: -6.79 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.05 Total: -62.67 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.81 Total: 15.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.62 -12.36 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602803074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.824 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds