Wall clock time and date at job start Fri Apr 10 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30295 * 126.34680 * 2 1 4 4 N 1.28527 * 110.05549 * 180.02562 * 3 2 1 5 5 C 1.31221 * 109.85928 * 359.97438 * 4 3 2 6 6 N 1.38580 * 126.47132 * 179.97438 * 5 4 3 7 7 C 1.46949 * 111.00171 * 0.02562 * 6 5 4 8 8 C 1.53051 * 109.36657 * 183.19110 * 7 6 5 9 9 N 1.46964 * 109.36197 * 301.60157 * 8 7 6 10 10 C 1.46903 * 110.99955 * 183.18742 * 9 8 7 11 11 C 1.52992 * 109.47037 * 160.86286 * 10 9 8 12 12 C 1.50701 * 115.55321 * 60.48867 * 11 10 9 13 13 H 1.07997 * 120.00422 * 232.83836 * 12 11 10 14 14 C 1.37886 * 119.99818 * 52.83846 * 12 11 10 15 15 N 1.31513 * 119.99943 * 5.89506 * 14 12 11 16 16 Si 1.86794 * 120.00057 * 186.18135 * 14 12 11 17 17 H 1.48495 * 109.47532 * 89.99389 * 16 14 12 18 18 H 1.48500 * 109.47190 * 209.99741 * 16 14 12 19 19 H 1.48508 * 109.46821 * 329.99411 * 16 14 12 20 20 C 1.52999 * 117.49795 * 206.15802 * 11 10 9 21 21 C 1.52998 * 117.50047 * 274.81705 * 11 10 9 22 22 C 1.46960 * 110.88096 * 59.32131 * 9 8 7 23 23 C 1.46958 * 111.00084 * 123.82647 * 6 5 4 24 24 N 1.36446 * 107.05180 * 0.22687 * 5 4 3 25 25 C 1.46500 * 127.13670 * 179.77112 * 24 5 4 26 26 H 1.08997 * 109.47138 * 89.97388 * 1 2 3 27 27 H 1.09000 * 109.46913 * 209.97597 * 1 2 3 28 28 H 1.09004 * 109.47107 * 329.97090 * 1 2 3 29 29 H 1.08997 * 109.48722 * 63.22633 * 7 6 5 30 30 H 1.08994 * 109.51133 * 303.17133 * 7 6 5 31 31 H 1.08994 * 109.49516 * 181.63508 * 8 7 6 32 32 H 1.09004 * 109.50880 * 61.57339 * 8 7 6 33 33 H 1.09001 * 109.47172 * 40.86112 * 10 9 8 34 34 H 1.09003 * 109.46987 * 280.86450 * 10 9 8 35 35 H 0.96999 * 120.00038 * 185.06862 * 15 14 12 36 36 H 1.09002 * 117.50096 * 215.00242 * 20 11 10 37 37 H 1.08999 * 117.50001 * 0.02682 * 20 11 10 38 38 H 1.08998 * 117.50063 * 359.97438 * 21 11 10 39 39 H 1.09003 * 117.50206 * 144.97341 * 21 11 10 40 40 H 1.08997 * 109.49083 * 60.64290 * 22 9 8 41 41 H 1.08998 * 109.49087 * 180.71198 * 22 9 8 42 42 H 1.09000 * 109.48512 * 296.77195 * 23 6 5 43 43 H 1.09000 * 109.48710 * 56.81698 * 23 6 5 44 44 H 1.09006 * 109.47239 * 90.00133 * 25 24 5 45 45 H 1.08999 * 109.47264 * 210.00040 * 25 24 5 46 46 H 1.08996 * 109.47522 * 330.00429 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 -0.0004 6 7 4.7580 -1.3736 -0.0013 7 6 5.9454 -0.5078 -0.0020 8 6 7.2048 -1.3738 -0.0834 9 7 7.2331 -2.3009 1.0565 10 6 8.4665 -3.0990 1.0555 11 6 8.6972 -3.6829 2.4507 12 6 7.6125 -4.5964 2.9606 13 1 7.1627 -4.4147 3.9254 14 6 7.1944 -5.6644 2.1952 15 7 7.8191 -5.9552 1.0750 16 14 5.7357 -6.6934 2.7453 17 1 4.4860 -6.1210 2.1835 18 1 5.9028 -8.0875 2.2616 19 1 5.6587 -6.6900 4.2284 20 6 10.1381 -4.0041 2.8526 21 6 9.4193 -2.8039 3.4738 22 6 6.0456 -3.1668 1.0571 23 6 4.7864 -2.3007 1.1386 24 7 2.3175 -1.1013 -0.0048 25 6 1.9010 -2.5058 -0.0111 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5143 29 1 5.9672 0.0802 0.9155 30 1 5.9078 0.1610 -0.8617 31 1 8.0877 -0.7353 -0.0547 32 1 7.1966 -1.9416 -1.0138 33 1 9.3097 -2.4642 0.7832 34 1 8.3739 -3.9099 0.3329 35 1 7.4810 -6.6592 0.4998 36 1 10.3015 -4.8762 3.4858 37 1 10.9217 -3.7990 2.1232 38 1 9.7304 -1.8098 3.1529 39 1 9.1095 -2.8861 4.5157 40 1 6.0239 -3.7548 0.1396 41 1 6.0834 -3.8353 1.9171 42 1 4.7951 -1.7328 2.0689 43 1 3.9033 -2.9389 1.1102 44 1 1.7956 -2.8581 1.0151 45 1 0.9455 -2.5992 -0.5272 46 1 2.6520 -3.1052 -0.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602941831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:51 Heat of formation + Delta-G solvation = 120.052082 kcal Electronic energy + Delta-G solvation = -26465.350012 eV Core-core repulsion = 23006.447784 eV Total energy + Delta-G solvation = -3458.902228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.03313 -40.45039 -38.46771 -36.20197 -35.73935 -34.22463 -32.63831 -31.92948 -29.63866 -28.27787 -27.72529 -27.68653 -24.99786 -24.55220 -22.84569 -22.43289 -21.80885 -20.85443 -20.72311 -18.48085 -17.96346 -17.56526 -17.20322 -16.65930 -16.13389 -16.01837 -15.85968 -15.62393 -15.35412 -14.87521 -14.68097 -14.43641 -14.35681 -13.84236 -13.66416 -13.59159 -13.32479 -13.28734 -12.95465 -12.77989 -12.62028 -12.56274 -12.31299 -12.23685 -12.01448 -11.87325 -11.84331 -11.51427 -11.19126 -11.16191 -10.84753 -10.75846 -10.38493 -9.90168 -9.28976 -8.97604 -8.04046 -6.07382 0.71374 1.24993 1.39429 1.46594 1.52943 1.74924 2.43416 2.60885 3.02620 3.22614 3.45508 3.67353 3.74423 3.79432 3.87655 4.00794 4.21838 4.23477 4.25731 4.33323 4.39627 4.43994 4.49473 4.60377 4.64754 4.70784 4.74464 4.84984 4.87073 4.90053 4.93480 4.95654 5.02881 5.05679 5.13396 5.23609 5.37945 5.44178 5.55694 5.60463 5.64602 5.65748 5.89641 6.14651 6.40971 6.47540 6.56642 6.88991 7.46571 7.70819 8.98445 Molecular weight = 305.19amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.004693 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.903742 B = 5965.421001 C = 7093.320284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.179 3.821 3 N -0.331 5.331 4 N -0.360 5.360 5 C 0.354 3.646 6 N -0.454 5.454 7 C 0.091 3.909 8 C 0.057 3.943 9 N -0.528 5.528 10 C 0.107 3.893 11 C 0.037 3.963 12 C -0.488 4.488 13 H 0.048 0.952 14 C 0.042 3.958 15 N -0.897 5.897 16 Si 0.921 3.079 17 H -0.257 1.257 18 H -0.290 1.290 19 H -0.274 1.274 20 C -0.195 4.195 21 C -0.183 4.183 22 C 0.054 3.946 23 C 0.065 3.935 24 N -0.485 5.485 25 C 0.064 3.936 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.012 0.988 41 H 0.124 0.876 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.128 0.872 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 5.184 -3.819 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 N -0.171 5.171 4 N -0.205 5.205 5 C -0.004 4.004 6 N -0.178 5.178 7 C -0.036 4.036 8 C -0.072 4.072 9 N -0.252 5.252 10 C -0.020 4.020 11 C 0.037 3.963 12 C -0.525 4.525 13 H 0.066 0.934 14 C -0.159 4.159 15 N -0.534 5.534 16 Si 0.746 3.254 17 H -0.181 1.181 18 H -0.216 1.216 19 H -0.199 1.199 20 C -0.233 4.233 21 C -0.220 4.220 22 C -0.074 4.074 23 C -0.061 4.061 24 N -0.181 5.181 25 C -0.077 4.077 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.030 0.970 41 H 0.141 0.859 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.121 6.416 -3.949 15.130 hybrid contribution -0.428 -2.183 0.053 2.225 sum -13.549 4.233 -3.896 14.720 Atomic orbital electron populations 1.20435 0.79841 1.06014 1.05488 1.25712 0.98336 0.81346 1.03619 1.73838 0.96503 1.25982 1.20746 1.74495 1.13039 1.07764 1.25173 1.22859 0.85336 0.89780 1.02448 1.58993 0.98756 1.17683 1.42335 1.21973 0.86057 0.93302 1.02295 1.22245 0.97208 0.95370 0.92384 1.62026 1.02697 1.19772 1.40740 1.21368 0.89300 0.93875 0.97472 1.18914 0.90130 0.95670 0.91626 1.20571 1.19323 1.09280 1.03358 0.93361 1.25395 0.98346 0.96686 0.95434 1.70052 1.38777 1.31364 1.13217 0.86138 0.81774 0.78632 0.78854 1.18146 1.21574 1.19919 1.22820 0.98268 0.98295 1.03940 1.22772 1.06971 0.94023 0.98255 1.22688 0.87320 0.94240 1.03103 1.22493 1.00264 0.93962 0.89424 1.46297 1.04659 1.10227 1.56875 1.22477 1.04180 0.75765 1.05283 0.87881 0.87798 0.88159 0.93393 0.89101 0.88737 0.95304 0.93640 0.93776 0.93078 0.91795 0.90903 0.89893 0.91101 0.97002 0.85911 0.94095 0.89000 0.88884 0.85359 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.09 71.24 0.72 0.02 16 2 C 0.18 4.38 8.07 137.64 1.11 5.49 16 3 N -0.33 -11.09 12.18 -49.54 -0.60 -11.69 16 4 N -0.36 -13.21 11.30 -58.01 -0.66 -13.86 16 5 C 0.35 11.57 7.22 260.11 1.88 13.44 16 6 N -0.45 -15.03 4.75 -705.57 -3.35 -18.39 16 7 C 0.09 3.00 4.99 86.31 0.43 3.43 16 8 C 0.06 1.93 5.57 86.31 0.48 2.41 16 9 N -0.53 -21.10 4.64 -895.70 -4.16 -25.26 16 10 C 0.11 4.71 4.77 86.30 0.41 5.12 16 11 C 0.04 1.74 1.77 -52.93 -0.09 1.64 16 12 C -0.49 -24.33 6.53 25.60 0.17 -24.17 16 13 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 14 C 0.04 2.08 3.66 84.66 0.31 2.39 16 15 N -0.90 -46.22 11.48 21.45 0.25 -45.98 16 16 Si 0.92 38.42 29.03 68.60 1.99 40.41 16 17 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 18 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C -0.19 -8.62 9.95 30.62 0.30 -8.32 16 21 C -0.18 -7.68 9.95 30.62 0.30 -7.37 16 22 C 0.05 2.18 4.75 86.31 0.41 2.59 16 23 C 0.07 2.22 5.43 86.31 0.47 2.68 16 24 N -0.48 -12.23 3.21 -538.19 -1.73 -13.96 16 25 C 0.06 1.03 9.19 127.77 1.17 2.20 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.67 7.95 -2.39 -0.02 0.65 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.87 8.02 -2.39 -0.02 2.85 16 31 H 0.09 2.89 8.00 -2.39 -0.02 2.87 16 32 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 1.85 7.82 -2.39 -0.02 1.83 16 34 H 0.04 2.19 6.19 -2.39 -0.01 2.17 16 35 H 0.26 12.96 8.32 -92.71 -0.77 12.19 16 36 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.12 5.53 3.23 -2.39 -0.01 5.52 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.09 2.69 5.35 -2.39 -0.01 2.67 16 44 H 0.09 1.29 7.80 -2.38 -0.02 1.27 16 45 H 0.13 1.07 7.90 -2.39 -0.02 1.05 16 46 H 0.09 1.62 7.65 -2.39 -0.02 1.60 16 Total: -1.00 -63.69 357.28 0.78 -62.91 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.97 Total: 24.26 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 8.07 Total: 1.56 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -10.25 Total: -129.13 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.99 Total: 40.41 kcal Total: -63.69 0.78 -62.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602941831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.960 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds