Wall clock time and date at job start Fri Apr 10 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46938 * 240.00193 * 2 1 3 5 5 N 1.46497 * 109.47243 * 120.00243 * 2 1 3 6 6 N 1.28780 * 125.44930 * 359.96965 * 5 2 1 7 7 N 1.28995 * 108.72938 * 180.02562 * 6 5 2 8 8 C 1.33324 * 107.35213 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.54691 * 179.73916 * 8 7 6 10 10 C 1.53005 * 109.47086 * 90.02481 * 9 8 7 11 11 N 1.46503 * 109.46708 * 179.97438 * 10 9 8 12 12 C 1.35316 * 125.86363 * 124.71273 * 11 10 9 13 13 C 1.35350 * 106.17560 * 179.90166 * 12 11 10 14 14 C 1.50697 * 126.75667 * 180.12356 * 13 12 11 15 15 C 1.50697 * 109.47420 * 125.24558 * 14 13 12 16 16 H 1.08004 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00497 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00351 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99751 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47201 * 89.99965 * 19 17 15 21 21 H 1.48498 * 109.47235 * 209.99868 * 19 17 15 22 22 H 1.48502 * 109.47359 * 329.99818 * 19 17 15 23 23 N 1.33773 * 106.49668 * 0.35666 * 13 12 11 24 24 N 1.28635 * 108.88471 * 359.77330 * 23 13 12 25 25 N 1.28884 * 125.44715 * 179.97438 * 5 2 1 26 26 H 1.08999 * 109.46464 * 299.99534 * 1 2 3 27 27 H 1.08995 * 109.46860 * 59.99845 * 1 2 3 28 28 H 1.08996 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47477 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47111 * 300.00316 * 3 2 1 31 31 H 1.09008 * 109.47268 * 60.00056 * 3 2 1 32 32 H 1.08998 * 109.46827 * 300.00048 * 4 2 1 33 33 H 1.08995 * 109.47116 * 59.99793 * 4 2 1 34 34 H 1.09002 * 109.47059 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46718 * 210.01877 * 9 8 7 36 36 H 1.08997 * 109.47323 * 330.02328 * 9 8 7 37 37 H 1.09000 * 109.46849 * 299.99316 * 10 9 8 38 38 H 1.08997 * 109.47164 * 59.99750 * 10 9 8 39 39 H 1.08005 * 126.91178 * 0.02562 * 12 11 10 40 40 H 1.08992 * 109.47583 * 245.25592 * 14 13 12 41 41 H 1.09008 * 109.46886 * 5.25256 * 14 13 12 42 42 H 0.96998 * 119.99781 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2783 -1.2171 2.1091 7 7 2.0400 -1.7374 3.0108 8 6 3.3018 -1.5219 2.6380 9 6 4.5421 -1.9448 3.3823 10 6 4.9646 -3.3401 2.9180 11 7 6.1707 -3.7509 3.6412 12 6 6.3128 -4.8845 4.3663 13 6 7.5749 -4.8640 4.8547 14 6 8.2221 -5.9100 5.7253 15 6 9.5046 -6.3738 5.0842 16 1 9.8198 -5.9529 4.1408 17 6 10.2757 -7.3355 5.7018 18 7 11.3952 -7.7400 5.1426 19 14 9.7303 -8.0641 7.3331 20 1 8.8835 -9.2581 7.0836 21 1 10.9242 -8.4602 8.1223 22 1 8.9495 -7.0531 8.0905 23 7 8.1333 -3.7299 4.4169 24 7 7.2754 -3.0929 3.7006 25 7 3.2575 -0.8684 1.5030 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 5.3456 -1.2363 3.1814 36 1 4.3346 -1.9652 4.4521 37 1 4.1611 -4.0487 3.1189 38 1 5.1721 -3.3197 1.8482 39 1 5.5694 -5.6523 4.5221 40 1 8.4389 -5.4841 6.7049 41 1 7.5457 -6.7572 5.8391 42 1 11.9374 -8.4168 5.5770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603254489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:55 Heat of formation + Delta-G solvation = 218.968787 kcal Electronic energy + Delta-G solvation = -23813.736238 eV Core-core repulsion = 20255.583016 eV Total energy + Delta-G solvation = -3558.153222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.70751 -42.59249 -38.23496 -35.87716 -33.80080 -33.52491 -32.78305 -31.26755 -30.27244 -28.21073 -28.20569 -27.89454 -25.51686 -24.86908 -23.12522 -22.25825 -21.23173 -21.02787 -19.90858 -17.68103 -17.50655 -16.91980 -16.66393 -15.96890 -15.19149 -14.87019 -14.80759 -14.46865 -14.30013 -14.08612 -13.75770 -13.49375 -13.27816 -13.10900 -12.99777 -12.97204 -12.50974 -12.36425 -12.18790 -12.13362 -12.02976 -11.84210 -11.62427 -11.21193 -11.19110 -11.08871 -10.62015 -10.57461 -10.43854 -10.07784 -9.84061 -9.41540 -9.29356 -8.51170 -8.25000 -5.97014 -3.94921 0.91041 1.44558 1.75827 2.17936 2.65767 3.34050 3.40352 3.42789 3.45203 3.45628 3.76393 3.86734 3.97269 4.17448 4.40002 4.49156 4.60775 4.74966 4.77829 4.80826 4.90761 4.93992 4.97232 4.99998 5.06182 5.22944 5.28559 5.33456 5.35969 5.42352 5.46810 5.56382 5.63037 5.76071 5.89269 5.94822 6.21558 6.88158 7.08871 7.11865 7.24350 7.76011 8.06531 8.60565 9.10918 9.24080 9.62102 11.16485 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.002198 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.759361 B =12736.928196 C =12984.761239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.159 4.159 4 C -0.160 4.160 5 N -0.130 5.130 6 N -0.061 5.061 7 N -0.281 5.281 8 C 0.168 3.832 9 C -0.033 4.033 10 C 0.132 3.868 11 N -0.305 5.305 12 C -0.076 4.076 13 C 0.039 3.961 14 C 0.059 3.941 15 C -0.506 4.506 16 H 0.076 0.924 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 N -0.252 5.252 24 N -0.104 5.104 25 N -0.296 5.296 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.184 0.816 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.351 16.851 -12.507 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.218 4.218 4 C -0.218 4.218 5 N -0.044 5.044 6 N -0.054 5.054 7 N -0.152 5.152 8 C -0.115 4.115 9 C -0.074 4.074 10 C 0.008 3.992 11 N -0.100 5.100 12 C -0.225 4.225 13 C -0.098 4.098 14 C 0.020 3.980 15 C -0.544 4.544 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 N -0.119 5.119 24 N -0.083 5.083 25 N -0.146 5.146 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.132 18.098 -13.096 34.380 hybrid contribution -0.421 -1.510 1.087 1.908 sum -26.553 16.588 -12.009 33.533 Atomic orbital electron populations 1.22098 0.90012 1.04665 1.04339 1.21430 0.96469 0.92796 0.79582 1.22245 1.03466 0.91990 1.04078 1.22248 1.03481 1.01091 0.94985 1.50551 1.01139 1.34674 1.18031 1.78940 1.21937 1.08915 0.95587 1.75893 1.00769 1.18761 1.19766 1.25236 0.95245 0.99250 0.91759 1.20118 0.90689 0.96827 0.99742 1.21737 0.84024 0.96324 0.97115 1.47063 1.11737 1.15827 1.35398 1.23365 1.01504 0.94014 1.03571 1.22492 0.90562 0.95852 1.00941 1.18155 0.96196 0.89948 0.93711 1.20920 1.03592 1.21418 1.08496 0.90583 1.24982 0.94758 0.96310 0.97376 1.69906 1.13767 1.30979 1.39352 0.86825 0.78420 0.79803 0.84557 1.20249 1.21271 1.18854 1.75105 1.21676 1.06148 1.08977 1.78211 0.89909 1.21037 1.19142 1.74654 1.03201 1.19897 1.16831 0.90602 0.89171 0.90557 0.90259 0.89077 0.91401 0.91344 0.89067 0.90243 0.86948 0.87602 0.87573 0.88504 0.79932 0.94377 0.95085 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 7.91 37.16 0.29 -0.27 16 2 C 0.18 0.95 1.30 -131.82 -0.17 0.77 16 3 C -0.16 -0.66 8.66 37.15 0.32 -0.33 16 4 C -0.16 -0.67 8.66 37.16 0.32 -0.35 16 5 N -0.13 -1.20 3.73 0.48 0.00 -1.19 16 6 N -0.06 -0.68 12.24 60.35 0.74 0.06 16 7 N -0.28 -3.41 12.50 32.45 0.41 -3.01 16 8 C 0.17 1.86 7.62 -156.62 -1.19 0.67 16 9 C -0.03 -0.34 5.97 -27.88 -0.17 -0.51 16 10 C 0.13 1.45 6.44 -4.04 -0.03 1.43 16 11 N -0.30 -4.90 3.44 -61.26 -0.21 -5.11 16 12 C -0.08 -1.32 11.49 -17.04 -0.20 -1.52 16 13 C 0.04 0.86 6.44 -82.78 -0.53 0.33 16 14 C 0.06 1.44 4.62 -29.04 -0.13 1.30 16 15 C -0.51 -14.86 9.64 -34.44 -0.33 -15.19 16 16 H 0.08 2.50 7.98 -52.48 -0.42 2.08 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 19 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 23 N -0.25 -5.94 12.40 33.29 0.41 -5.53 16 24 N -0.10 -2.07 12.91 60.35 0.78 -1.29 16 25 N -0.30 -3.14 11.83 32.47 0.38 -2.75 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 1.22 8.12 -51.93 -0.42 0.80 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.18 2.44 8.06 -52.48 -0.42 2.01 16 40 H 0.04 0.94 7.20 -51.93 -0.37 0.56 16 41 H 0.03 0.69 7.55 -51.92 -0.39 0.30 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -36.70 360.30 -4.13 -40.83 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.26 Total: -4.96 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.91 Total: -11.79 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 3.29 Total: -46.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.70 -4.13 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603254489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.801 kcal (2) G-P(sol) polarization free energy of solvation -36.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 218.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds