Wall clock time and date at job start Fri Apr 10 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46938 * 240.00193 * 2 1 3 5 5 N 1.46497 * 109.47243 * 120.00243 * 2 1 3 6 6 N 1.28780 * 125.44930 * 359.96965 * 5 2 1 7 7 N 1.28995 * 108.72938 * 180.02562 * 6 5 2 8 8 C 1.33324 * 107.35213 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.54691 * 179.73916 * 8 7 6 10 10 C 1.53005 * 109.47086 * 90.02481 * 9 8 7 11 11 N 1.46503 * 109.46708 * 179.97438 * 10 9 8 12 12 C 1.35316 * 125.86363 * 124.71273 * 11 10 9 13 13 C 1.35350 * 106.17560 * 179.90166 * 12 11 10 14 14 C 1.50697 * 126.75667 * 180.12356 * 13 12 11 15 15 C 1.50697 * 109.47420 * 125.24558 * 14 13 12 16 16 H 1.08004 * 119.99576 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00497 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00351 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99751 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47201 * 89.99965 * 19 17 15 21 21 H 1.48498 * 109.47235 * 209.99868 * 19 17 15 22 22 H 1.48502 * 109.47359 * 329.99818 * 19 17 15 23 23 N 1.33773 * 106.49668 * 0.35666 * 13 12 11 24 24 N 1.28635 * 108.88471 * 359.77330 * 23 13 12 25 25 N 1.28884 * 125.44715 * 179.97438 * 5 2 1 26 26 H 1.08999 * 109.46464 * 299.99534 * 1 2 3 27 27 H 1.08995 * 109.46860 * 59.99845 * 1 2 3 28 28 H 1.08996 * 109.46716 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47477 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47111 * 300.00316 * 3 2 1 31 31 H 1.09008 * 109.47268 * 60.00056 * 3 2 1 32 32 H 1.08998 * 109.46827 * 300.00048 * 4 2 1 33 33 H 1.08995 * 109.47116 * 59.99793 * 4 2 1 34 34 H 1.09002 * 109.47059 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.46718 * 210.01877 * 9 8 7 36 36 H 1.08997 * 109.47323 * 330.02328 * 9 8 7 37 37 H 1.09000 * 109.46849 * 299.99316 * 10 9 8 38 38 H 1.08997 * 109.47164 * 59.99750 * 10 9 8 39 39 H 1.08005 * 126.91178 * 0.02562 * 12 11 10 40 40 H 1.08992 * 109.47583 * 245.25592 * 14 13 12 41 41 H 1.09008 * 109.46886 * 5.25256 * 14 13 12 42 42 H 0.96998 * 119.99781 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2783 -1.2171 2.1091 7 7 2.0400 -1.7374 3.0108 8 6 3.3018 -1.5219 2.6380 9 6 4.5421 -1.9448 3.3823 10 6 4.9646 -3.3401 2.9180 11 7 6.1707 -3.7509 3.6412 12 6 6.3128 -4.8845 4.3663 13 6 7.5749 -4.8640 4.8547 14 6 8.2221 -5.9100 5.7253 15 6 9.5046 -6.3738 5.0842 16 1 9.8198 -5.9529 4.1408 17 6 10.2757 -7.3355 5.7018 18 7 11.3952 -7.7400 5.1426 19 14 9.7303 -8.0641 7.3331 20 1 8.8835 -9.2581 7.0836 21 1 10.9242 -8.4602 8.1223 22 1 8.9495 -7.0531 8.0905 23 7 8.1333 -3.7299 4.4169 24 7 7.2754 -3.0929 3.7006 25 7 3.2575 -0.8684 1.5030 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2491 35 1 5.3456 -1.2363 3.1814 36 1 4.3346 -1.9652 4.4521 37 1 4.1611 -4.0487 3.1189 38 1 5.1721 -3.3197 1.8482 39 1 5.5694 -5.6523 4.5221 40 1 8.4389 -5.4841 6.7049 41 1 7.5457 -6.7572 5.8391 42 1 11.9374 -8.4168 5.5770 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603254489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:55 Heat of formation + Delta-G solvation = 192.442626 kcal Electronic energy + Delta-G solvation = -23814.886499 eV Core-core repulsion = 20255.583016 eV Total energy + Delta-G solvation = -3559.303482 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.48899 -44.06845 -38.73161 -36.98169 -35.37422 -34.55595 -34.00155 -33.09548 -31.30043 -29.75549 -28.52818 -28.50181 -26.51834 -25.62558 -25.07012 -23.22677 -22.60360 -21.64790 -21.40549 -18.90474 -18.55135 -18.12565 -17.89051 -17.26021 -16.35501 -15.97491 -15.74103 -15.32417 -15.24394 -15.09585 -15.02147 -14.63888 -14.24510 -14.12482 -13.91809 -13.74537 -13.42455 -13.23576 -13.02960 -12.86470 -12.84895 -12.70828 -12.56764 -12.41388 -12.30090 -12.14145 -11.97032 -11.92727 -11.87987 -11.60754 -11.42938 -11.25041 -10.83251 -10.71136 -9.86205 -8.22001 -6.27065 0.13689 0.69815 0.87734 0.95985 1.43089 1.47349 1.51708 1.59139 1.76479 2.43271 2.73907 3.08192 3.12209 3.40843 3.50969 3.55621 3.64461 3.69589 3.82706 4.06478 4.23588 4.33110 4.42379 4.43950 4.45271 4.52111 4.54065 4.60251 4.69820 4.71994 4.72292 4.75461 4.84298 5.02469 5.09382 5.10865 5.21853 5.29879 5.35265 5.39552 5.64648 5.79550 6.34755 6.78258 7.26283 7.34505 7.70630 8.95762 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.002198 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.759361 B =12736.928196 C =12984.761239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.163 3.837 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.118 5.118 6 N -0.072 5.072 7 N -0.303 5.303 8 C 0.165 3.835 9 C -0.023 4.023 10 C 0.127 3.873 11 N -0.287 5.287 12 C -0.043 4.043 13 C -0.008 4.008 14 C 0.065 3.935 15 C -0.517 4.517 16 H 0.018 0.982 17 C 0.000 4.000 18 N -0.956 5.956 19 Si 0.960 3.040 20 H -0.256 1.256 21 H -0.288 1.288 22 H -0.241 1.241 23 N -0.307 5.307 24 N -0.117 5.117 25 N -0.305 5.305 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.233 0.767 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.857 16.819 -12.472 36.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.084 3.916 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.034 5.034 6 N -0.064 5.064 7 N -0.173 5.173 8 C -0.118 4.118 9 C -0.064 4.064 10 C 0.006 3.994 11 N -0.082 5.082 12 C -0.193 4.193 13 C -0.146 4.146 14 C 0.026 3.974 15 C -0.555 4.555 16 H 0.036 0.964 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.781 3.219 20 H -0.180 1.180 21 H -0.214 1.214 22 H -0.164 1.164 23 N -0.174 5.174 24 N -0.096 5.096 25 N -0.156 5.156 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.249 0.751 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.678 18.111 -13.090 37.151 hybrid contribution 0.590 -1.365 0.849 1.712 sum -29.088 16.747 -12.241 35.727 Atomic orbital electron populations 1.22144 0.88561 1.04518 1.05536 1.22003 0.97661 0.93254 0.78672 1.22273 1.02568 0.91302 1.05289 1.22272 1.02577 1.01009 0.95568 1.51044 1.00556 1.33519 1.18263 1.78881 1.22111 1.09401 0.95991 1.75855 1.01143 1.19764 1.20576 1.25223 0.95091 0.99562 0.91936 1.19981 0.90289 0.96238 0.99935 1.22158 0.82697 0.97472 0.97107 1.47411 1.11907 1.14923 1.33986 1.23877 1.00376 0.94310 1.00708 1.22407 0.92863 0.96043 1.03276 1.17988 0.94376 0.91488 0.93507 1.21137 1.06185 1.21353 1.06845 0.96387 1.26098 0.94518 0.96711 1.02296 1.70095 1.15616 1.32129 1.41820 0.85532 0.78312 0.79676 0.78340 1.18045 1.21428 1.16417 1.75027 1.23886 1.07595 1.10865 1.78098 0.90859 1.21355 1.19244 1.74640 1.04074 1.20058 1.16858 0.91452 0.85906 0.91351 0.91639 0.85825 0.92225 0.92084 0.85877 0.91622 0.87729 0.87172 0.84367 0.87508 0.75075 0.94633 0.92090 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 7.91 71.98 0.57 -0.21 16 2 C 0.16 1.44 1.30 3.61 0.00 1.45 16 3 C -0.16 -1.00 8.66 71.98 0.62 -0.37 16 4 C -0.16 -0.99 8.66 71.98 0.62 -0.36 16 5 N -0.12 -2.05 3.73 -152.39 -0.57 -2.61 16 6 N -0.07 -1.51 12.24 37.02 0.45 -1.06 16 7 N -0.30 -7.02 12.50 -51.26 -0.64 -7.66 16 8 C 0.16 3.46 7.62 138.55 1.06 4.51 16 9 C -0.02 -0.45 5.97 29.85 0.18 -0.27 16 10 C 0.13 2.48 6.44 86.38 0.56 3.03 16 11 N -0.29 -8.70 3.44 -347.72 -1.20 -9.90 16 12 C -0.04 -1.37 11.49 83.49 0.96 -0.41 16 13 C -0.01 -0.34 6.44 41.60 0.27 -0.07 16 14 C 0.07 3.15 4.62 29.10 0.13 3.28 16 15 C -0.52 -31.32 9.64 25.60 0.25 -31.07 16 16 H 0.02 1.25 7.98 -2.91 -0.02 1.22 16 17 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 18 N -0.96 -62.02 13.96 21.45 0.30 -61.72 16 19 Si 0.96 43.92 27.47 68.60 1.88 45.81 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 23 N -0.31 -14.87 12.40 -48.60 -0.60 -15.47 16 24 N -0.12 -4.65 12.91 37.02 0.48 -4.17 16 25 N -0.31 -6.21 11.83 -51.20 -0.61 -6.81 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 27 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 2.21 8.12 -2.39 -0.02 2.19 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.14 1.90 8.07 -2.39 -0.02 1.88 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.23 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 41 H 0.06 2.55 7.55 -2.38 -0.02 2.53 16 42 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -85.40 360.30 6.14 -79.25 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 0.96 Total: 4.40 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.68 Total: -20.05 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -2.38 Total: -109.41 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.81 kcal Total: -85.40 6.14 -79.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603254489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 271.697 kcal (2) G-P(sol) polarization free energy of solvation -85.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds