Wall clock time and date at job start Fri Apr 10 2020 17:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 119.99915 * 2 1 4 4 C 1.50696 * 109.47696 * 270.00025 * 3 2 1 5 5 N 1.30800 * 126.24920 * 269.98090 * 4 3 2 6 6 N 1.28684 * 110.29281 * 179.97438 * 5 4 3 7 7 C 1.32307 * 109.48098 * 0.05683 * 6 5 4 8 8 C 1.40816 * 133.46652 * 179.97438 * 7 6 5 9 9 C 1.36026 * 119.22832 * 179.97438 * 8 7 6 10 10 C 1.40543 * 119.74629 * 359.97438 * 9 8 7 11 11 C 1.34954 * 120.36606 * 359.97438 * 10 9 8 12 12 N 1.36074 * 126.24250 * 90.00010 * 4 3 2 13 13 C 1.34776 * 120.00037 * 180.02562 * 2 1 3 14 14 O 1.21284 * 120.00126 * 179.97438 * 13 2 1 15 15 C 1.50699 * 119.99728 * 359.97438 * 13 2 1 16 16 S 1.81005 * 109.46959 * 180.02562 * 15 13 2 17 17 C 1.76200 * 100.00061 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00264 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99947 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99906 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99830 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47085 * 89.99875 * 21 19 17 23 23 H 1.48504 * 109.46658 * 209.99476 * 21 19 17 24 24 H 1.48498 * 109.47261 * 329.99621 * 21 19 17 25 25 H 1.09001 * 109.47143 * 89.99792 * 1 2 3 26 26 H 1.08999 * 109.47413 * 209.99605 * 1 2 3 27 27 H 1.08997 * 109.47322 * 329.99695 * 1 2 3 28 28 H 1.09004 * 109.47229 * 149.99796 * 3 2 1 29 29 H 1.09004 * 109.46910 * 30.00551 * 3 2 1 30 30 H 1.08004 * 120.39039 * 359.95108 * 8 7 6 31 31 H 1.07996 * 120.12877 * 179.97438 * 9 8 7 32 32 H 1.07998 * 119.81679 * 180.02562 * 10 9 8 33 33 H 1.08006 * 119.74725 * 179.74654 * 11 10 9 34 34 H 1.08993 * 109.47715 * 300.00001 * 15 13 2 35 35 H 1.08997 * 109.47524 * 60.00517 * 15 13 2 36 36 H 0.97000 * 120.00146 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 7 3.4913 1.4001 -2.1498 6 7 3.3909 1.9337 -3.3164 7 6 2.2610 2.6178 -3.3930 8 6 1.6580 3.3816 -4.4108 9 6 0.4584 3.9768 -4.1724 10 6 -0.1604 3.8218 -2.9201 11 6 0.4289 3.0858 -1.9544 12 7 1.6323 2.4849 -2.1792 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3853 -2.4722 -0.0005 16 16 2.5615 -3.8480 -0.0005 17 6 1.4414 -5.2082 0.0003 18 1 0.3762 -5.0305 0.0001 19 6 1.9282 -6.5081 -0.0001 20 7 1.0914 -7.5242 0.0010 21 14 3.7708 -6.8154 -0.0006 22 1 4.2594 -6.8970 1.3993 23 1 4.0592 -8.0928 -0.7008 24 1 4.4583 -5.7008 -0.7007 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.1499 1.1384 0.5139 29 1 1.6083 2.0283 0.5139 30 1 2.1426 3.4939 -5.3695 31 1 -0.0169 4.5663 -4.9425 32 1 -1.1130 4.2935 -2.7297 33 1 -0.0535 2.9767 -0.9943 34 1 0.7590 -2.5303 0.8896 35 1 0.7584 -2.5299 -0.8903 36 1 1.4316 -8.4326 0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604538932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:58 Heat of formation + Delta-G solvation = 86.391712 kcal Electronic energy + Delta-G solvation = -21962.470206 eV Core-core repulsion = 18575.476374 eV Total energy + Delta-G solvation = -3386.993832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.74046 -39.59717 -38.45943 -35.79727 -34.21516 -32.43210 -31.80533 -30.95316 -29.23933 -27.46997 -25.96238 -25.52370 -24.55791 -23.53445 -21.85322 -19.62141 -18.33102 -17.67402 -17.51619 -17.04935 -16.58809 -16.39006 -15.81159 -15.69267 -15.25743 -14.94538 -14.22817 -13.87412 -13.35075 -13.23955 -13.06859 -12.84078 -12.78780 -12.71752 -12.41722 -12.31757 -12.01631 -11.72026 -11.53196 -11.24399 -10.98927 -10.65215 -10.60158 -9.90863 -9.82835 -9.54241 -8.99671 -8.94474 -8.48084 -8.37656 -6.91023 -6.28401 -4.00067 0.24975 0.75365 1.97855 2.32324 2.79173 2.88609 3.02522 3.21317 3.35143 3.54223 3.59260 3.72615 4.01671 4.11005 4.29771 4.35160 4.39021 4.51628 4.62940 4.80953 4.85364 5.10538 5.11317 5.12626 5.20015 5.31295 5.40114 5.45971 5.58778 5.67627 5.73730 5.77341 5.96023 5.96264 6.28399 6.56927 7.24760 7.94532 8.35633 8.41112 8.41221 9.18035 10.80769 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.003255 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.846492 B = 8600.091952 C = 8819.386191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.623 5.623 3 C 0.210 3.790 4 C 0.126 3.874 5 N -0.216 5.216 6 N -0.287 5.287 7 C 0.187 3.813 8 C -0.074 4.074 9 C -0.093 4.093 10 C -0.139 4.139 11 C 0.066 3.934 12 N -0.387 5.387 13 C 0.531 3.469 14 O -0.493 6.493 15 C -0.120 4.120 16 S -0.139 6.139 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.855 3.145 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.234 1.234 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 27.369 -3.371 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.361 5.361 3 C 0.084 3.916 4 C -0.137 4.137 5 N -0.056 5.056 6 N -0.134 5.134 7 C -0.062 4.062 8 C -0.096 4.096 9 C -0.117 4.117 10 C -0.161 4.161 11 C -0.057 4.057 12 N -0.067 5.067 13 C 0.318 3.682 14 O -0.364 6.364 15 C -0.270 4.270 16 S 0.087 5.913 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.680 3.320 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.158 1.158 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.114 0.886 30 H 0.174 0.826 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.184 0.816 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.623 26.406 -3.664 27.057 hybrid contribution -2.239 0.154 0.213 2.255 sum -6.862 26.559 -3.451 27.648 Atomic orbital electron populations 1.21870 0.79263 1.03741 1.01770 1.47934 1.06871 1.04952 1.76323 1.19601 1.00705 0.85702 0.85633 1.25583 0.89829 0.99280 0.99055 1.74405 1.18164 1.15153 0.97904 1.75086 1.14097 1.11852 1.12331 1.22440 0.93500 1.02947 0.87284 1.20325 0.95479 0.96083 0.97687 1.21177 0.94447 0.98796 0.97300 1.20935 1.01665 1.00353 0.93098 1.21640 0.85358 0.96736 1.01958 1.43820 1.15957 1.33875 1.13087 1.20408 0.88129 0.84430 0.75189 1.90757 1.13366 1.86400 1.45889 1.23302 1.03148 0.95056 1.05505 1.84877 1.11658 0.97328 1.97389 1.22305 0.94836 0.90936 1.58844 0.89442 1.24703 0.98580 0.94848 0.93104 1.69936 1.34829 0.98890 1.48089 0.86747 0.85317 0.79936 0.79982 1.19150 1.19903 1.15797 0.93056 0.89712 0.91208 0.85839 0.88650 0.82600 0.83532 0.82725 0.81607 0.88389 0.88697 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.28 59.85 0.62 1.29 16 2 N -0.62 -8.10 2.86 -182.96 -0.52 -8.62 16 3 C 0.21 2.37 5.97 -5.20 -0.03 2.34 16 4 C 0.13 1.74 7.72 -154.22 -1.19 0.55 16 5 N -0.22 -3.91 12.19 32.94 0.40 -3.51 16 6 N -0.29 -4.91 12.31 31.14 0.38 -4.53 16 7 C 0.19 2.41 7.92 -156.06 -1.24 1.17 16 8 C -0.07 -0.62 10.11 -39.40 -0.40 -1.02 16 9 C -0.09 -0.49 10.07 -39.51 -0.40 -0.88 16 10 C -0.14 -0.63 9.98 -39.88 -0.40 -1.02 16 11 C 0.07 0.42 10.91 -16.70 -0.18 0.24 16 12 N -0.39 -4.30 2.95 -59.73 -0.18 -4.47 16 13 C 0.53 9.73 7.69 -10.99 -0.08 9.65 16 14 O -0.49 -10.98 15.44 5.55 0.09 -10.89 16 15 C -0.12 -2.36 4.71 36.00 0.17 -2.19 16 16 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 17 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 21 Si 0.86 22.18 27.74 -169.99 -4.72 17.46 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 27 H 0.07 0.34 7.89 -51.93 -0.41 -0.07 16 28 H 0.12 1.58 7.42 -51.93 -0.39 1.20 16 29 H 0.10 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 32 H 0.16 0.17 8.06 -52.49 -0.42 -0.25 16 33 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 34 H 0.10 1.74 7.40 -51.92 -0.38 1.35 16 35 H 0.09 1.79 8.11 -51.92 -0.42 1.37 16 36 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -39.67 329.72 -7.75 -47.42 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -4.04 Total: -4.23 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.92 Total: -1.99 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.86 Total: -47.15 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.72 Total: 17.46 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -39.67 -7.75 -47.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.813 kcal (2) G-P(sol) polarization free energy of solvation -39.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds