Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00322 * 2 1 4 4 S 1.65606 * 119.99985 * 180.02562 * 2 1 3 5 5 O 1.42102 * 106.39651 * 336.45577 * 4 2 1 6 6 O 1.42101 * 106.40162 * 203.54099 * 4 2 1 7 7 N 1.65596 * 107.21949 * 89.99504 * 4 2 1 8 8 C 1.47079 * 120.87712 * 90.00297 * 7 4 2 9 9 C 1.53246 * 108.51891 * 128.83819 * 8 7 4 10 10 N 1.46901 * 109.34053 * 53.82944 * 9 8 7 11 11 C 1.46895 * 110.99903 * 172.74709 * 10 9 8 12 12 C 1.53004 * 109.47306 * 169.99683 * 11 10 9 13 13 C 1.52991 * 109.47289 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47202 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99995 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00057 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99759 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47286 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46881 * 120.00335 * 18 16 14 21 21 H 1.48501 * 109.47177 * 240.00012 * 18 16 14 22 22 C 1.46899 * 111.26873 * 296.89498 * 10 9 8 23 23 C 1.47079 * 120.88320 * 270.02193 * 7 4 2 24 24 H 1.09001 * 109.46690 * 270.00148 * 1 2 3 25 25 H 1.09006 * 109.47093 * 29.99458 * 1 2 3 26 26 H 1.08990 * 109.47324 * 149.99642 * 1 2 3 27 27 H 1.08998 * 109.47487 * 240.00192 * 3 2 1 28 28 H 1.08995 * 109.47253 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46861 * 120.00472 * 3 2 1 30 30 H 1.08995 * 109.63177 * 9.13054 * 8 7 4 31 31 H 1.09001 * 109.62764 * 248.54498 * 8 7 4 32 32 H 1.09004 * 109.49240 * 173.78967 * 9 8 7 33 33 H 1.08996 * 109.48872 * 293.86772 * 9 8 7 34 34 H 1.08999 * 109.47226 * 289.99927 * 11 10 9 35 35 H 1.08999 * 109.47231 * 49.99551 * 11 10 9 36 36 H 1.08999 * 109.47177 * 300.00274 * 12 11 10 37 37 H 1.09001 * 109.46669 * 60.00109 * 12 11 10 38 38 H 1.09002 * 109.47238 * 299.99724 * 13 12 11 39 39 H 1.08999 * 109.47223 * 59.99882 * 13 12 11 40 40 H 0.97006 * 120.00211 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49696 * 183.07059 * 22 10 9 42 42 H 1.09004 * 109.49043 * 303.15023 * 22 10 9 43 43 H 1.09004 * 109.62584 * 111.45163 * 23 7 4 44 44 H 1.08998 * 109.62928 * 350.87805 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4113 -2.4067 0.5435 6 8 3.5759 -1.1571 0.5439 7 7 2.5380 -1.8581 -1.5826 8 6 3.7429 -1.4202 -2.3034 9 6 4.3929 -2.6458 -2.9546 10 7 3.3968 -3.3454 -3.7770 11 6 4.0202 -4.4253 -4.5536 12 6 2.9306 -5.2841 -5.1988 13 6 3.5799 -6.4084 -6.0081 14 6 2.5067 -7.2538 -6.6442 15 1 1.4657 -7.0135 -6.4866 16 6 2.8539 -8.3342 -7.4274 17 7 4.1216 -8.6265 -7.6197 18 14 1.5236 -9.3825 -8.2152 19 1 0.1884 -8.8469 -7.8470 20 1 1.6789 -9.3519 -9.6917 21 1 1.6461 -10.7819 -7.7335 22 6 2.2923 -3.8578 -2.9552 23 6 1.5563 -2.6821 -2.3041 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 2.8242 1.3265 -0.8900 28 1 1.4893 2.0972 0.0005 29 1 2.8243 1.3263 0.8900 30 1 4.4425 -0.9632 -1.6036 31 1 3.4673 -0.6995 -3.0733 32 1 5.2238 -2.3258 -3.5834 33 1 4.7607 -3.3174 -2.1790 34 1 4.6522 -3.9958 -5.3308 35 1 4.6271 -5.0444 -3.8928 36 1 2.2986 -5.7136 -4.4216 37 1 2.3239 -4.6649 -5.8596 38 1 4.2116 -5.9785 -6.7855 39 1 4.1870 -7.0276 -5.3478 40 1 4.3659 -9.3869 -8.1704 41 1 1.5998 -4.4170 -3.5843 42 1 2.6895 -4.5127 -2.1796 43 1 1.0705 -2.0826 -3.0740 44 1 0.8102 -3.0592 -1.6047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = -65.727254 kcal Electronic energy + Delta-G solvation = -23964.593299 eV Core-core repulsion = 20464.953180 eV Total energy + Delta-G solvation = -3499.640119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.04415 -37.55747 -36.47684 -36.04881 -35.44612 -33.32710 -31.48053 -30.90937 -28.49349 -27.54211 -25.33536 -24.95190 -23.92250 -22.45195 -20.85018 -19.76226 -19.13044 -18.06106 -17.65688 -16.55218 -16.31654 -15.32748 -15.24451 -15.06465 -14.92219 -14.66729 -14.45053 -14.37784 -14.28959 -13.58379 -13.28623 -13.05490 -12.75065 -12.61021 -12.57523 -12.24365 -12.10388 -12.06433 -11.87449 -11.76601 -11.47896 -11.32056 -11.30332 -10.91563 -10.84703 -10.51019 -10.37165 -9.66397 -9.53423 -9.35759 -9.29541 -9.02503 -8.34867 -8.09151 -5.99964 -4.02146 0.28517 2.55554 3.21390 3.31191 3.38664 3.42730 4.01425 4.04854 4.33373 4.46479 4.52130 4.88218 4.96571 4.98105 5.08890 5.13639 5.22443 5.26419 5.32422 5.36099 5.36314 5.37942 5.50990 5.56441 5.68449 5.76535 5.84853 5.88685 5.95585 6.03588 6.06134 6.26699 6.44027 6.66527 6.73814 7.05148 7.30047 7.33258 7.67536 7.81866 8.00100 8.42949 9.05224 9.62029 11.11519 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.002746 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.422540 B =10193.551961 C =10617.593894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.018 6.018 3 C 0.092 3.908 4 S 2.784 3.216 5 O -0.972 6.972 6 O -0.975 6.975 7 N -1.006 6.006 8 C 0.125 3.875 9 C 0.043 3.957 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.113 4.113 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.036 3.964 23 C 0.123 3.877 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 21.801 14.748 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.858 5.858 3 C -0.053 4.053 4 S 2.793 3.207 5 O -0.956 6.956 6 O -0.959 6.959 7 N -0.848 5.848 8 C 0.000 4.000 9 C -0.087 4.087 10 N -0.262 5.262 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.093 4.093 23 C -0.002 4.002 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.548 21.571 15.124 26.734 hybrid contribution -0.392 -1.001 -0.338 1.127 sum -4.940 20.569 14.786 25.810 Atomic orbital electron populations 1.21497 0.78216 1.03168 1.02190 1.57861 1.15511 1.22488 1.89978 1.21506 0.96613 0.85234 1.01966 1.02014 0.73017 0.72641 0.73002 1.93608 1.67007 1.58444 1.76559 1.93589 1.40386 1.85252 1.76629 1.58157 1.30083 1.64865 1.31666 1.21562 0.85296 0.96922 0.96239 1.22394 0.94798 0.95491 0.96055 1.62012 1.10264 1.28773 1.25102 1.22312 0.97662 0.90941 0.96198 1.21808 0.96888 0.97339 0.99013 1.19069 0.96001 0.91981 0.94522 1.21277 0.93083 1.11634 1.29678 0.92636 1.25033 0.95317 0.97612 0.96594 1.69976 1.15773 1.28434 1.39371 0.86540 0.82142 0.80253 0.79079 1.19720 1.21032 1.21059 1.22561 0.95138 0.95459 0.96191 1.21639 0.90234 0.92076 0.96237 0.92430 0.90942 0.91053 0.92300 0.90275 0.91631 0.89073 0.90671 0.89555 0.94482 0.90836 0.95212 0.93091 0.92454 0.96540 0.96807 0.93077 0.87940 0.94466 0.90594 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.26 59.85 0.61 1.22 16 2 N -1.02 -8.42 3.64 -129.21 -0.47 -8.89 16 3 C 0.09 0.57 10.30 59.85 0.62 1.18 16 4 S 2.78 32.14 6.12 -107.50 -0.66 31.48 16 5 O -0.97 -13.82 15.82 -57.17 -0.90 -14.73 16 6 O -0.97 -13.48 15.91 -57.17 -0.91 -14.39 16 7 N -1.01 -10.98 3.39 -113.23 -0.38 -11.36 16 8 C 0.13 1.28 6.67 -3.60 -0.02 1.25 16 9 C 0.04 0.52 5.58 -3.70 -0.02 0.50 16 10 N -0.54 -7.73 4.78 -234.32 -1.12 -8.85 16 11 C 0.06 0.95 5.27 -3.82 -0.02 0.93 16 12 C -0.11 -2.27 4.40 -26.73 -0.12 -2.39 16 13 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.04 0.50 5.04 -3.70 -0.02 0.48 16 23 C 0.12 1.37 6.66 -3.60 -0.02 1.35 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 26 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.31 7.79 -51.93 -0.40 -0.09 16 29 H 0.07 0.43 8.01 -51.93 -0.42 0.01 16 30 H 0.09 0.85 6.93 -51.93 -0.36 0.49 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.05 1.00 6.18 -51.93 -0.32 0.68 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.10 1.46 5.73 -51.93 -0.30 1.16 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.96 6.93 -51.93 -0.36 0.60 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -34.32 358.47 -10.46 -44.77 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -7.58 Total: -5.28 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 0.46 Total: -8.51 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -1.24 Total: -55.40 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.81 Total: -29.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 32.14 SS G_CDS: -0.66 Total: 31.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.32 -10.46 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.955 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds