Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00322 * 2 1 4 4 S 1.65606 * 119.99985 * 180.02562 * 2 1 3 5 5 O 1.42102 * 106.39651 * 336.45577 * 4 2 1 6 6 O 1.42101 * 106.40162 * 203.54099 * 4 2 1 7 7 N 1.65596 * 107.21949 * 89.99504 * 4 2 1 8 8 C 1.47079 * 120.87712 * 90.00297 * 7 4 2 9 9 C 1.53246 * 108.51891 * 128.83819 * 8 7 4 10 10 N 1.46901 * 109.34053 * 53.82944 * 9 8 7 11 11 C 1.46895 * 110.99903 * 172.74709 * 10 9 8 12 12 C 1.53004 * 109.47306 * 169.99683 * 11 10 9 13 13 C 1.52991 * 109.47289 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47202 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99995 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00057 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99759 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47286 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46881 * 120.00335 * 18 16 14 21 21 H 1.48501 * 109.47177 * 240.00012 * 18 16 14 22 22 C 1.46899 * 111.26873 * 296.89498 * 10 9 8 23 23 C 1.47079 * 120.88320 * 270.02193 * 7 4 2 24 24 H 1.09001 * 109.46690 * 270.00148 * 1 2 3 25 25 H 1.09006 * 109.47093 * 29.99458 * 1 2 3 26 26 H 1.08990 * 109.47324 * 149.99642 * 1 2 3 27 27 H 1.08998 * 109.47487 * 240.00192 * 3 2 1 28 28 H 1.08995 * 109.47253 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46861 * 120.00472 * 3 2 1 30 30 H 1.08995 * 109.63177 * 9.13054 * 8 7 4 31 31 H 1.09001 * 109.62764 * 248.54498 * 8 7 4 32 32 H 1.09004 * 109.49240 * 173.78967 * 9 8 7 33 33 H 1.08996 * 109.48872 * 293.86772 * 9 8 7 34 34 H 1.08999 * 109.47226 * 289.99927 * 11 10 9 35 35 H 1.08999 * 109.47231 * 49.99551 * 11 10 9 36 36 H 1.08999 * 109.47177 * 300.00274 * 12 11 10 37 37 H 1.09001 * 109.46669 * 60.00109 * 12 11 10 38 38 H 1.09002 * 109.47238 * 299.99724 * 13 12 11 39 39 H 1.08999 * 109.47223 * 59.99882 * 13 12 11 40 40 H 0.97006 * 120.00211 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49696 * 183.07059 * 22 10 9 42 42 H 1.09004 * 109.49043 * 303.15023 * 22 10 9 43 43 H 1.09004 * 109.62584 * 111.45163 * 23 7 4 44 44 H 1.08998 * 109.62928 * 350.87805 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 1.4113 -2.4067 0.5435 6 8 3.5759 -1.1571 0.5439 7 7 2.5380 -1.8581 -1.5826 8 6 3.7429 -1.4202 -2.3034 9 6 4.3929 -2.6458 -2.9546 10 7 3.3968 -3.3454 -3.7770 11 6 4.0202 -4.4253 -4.5536 12 6 2.9306 -5.2841 -5.1988 13 6 3.5799 -6.4084 -6.0081 14 6 2.5067 -7.2538 -6.6442 15 1 1.4657 -7.0135 -6.4866 16 6 2.8539 -8.3342 -7.4274 17 7 4.1216 -8.6265 -7.6197 18 14 1.5236 -9.3825 -8.2152 19 1 0.1884 -8.8469 -7.8470 20 1 1.6789 -9.3519 -9.6917 21 1 1.6461 -10.7819 -7.7335 22 6 2.2923 -3.8578 -2.9552 23 6 1.5563 -2.6821 -2.3041 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 2.8242 1.3265 -0.8900 28 1 1.4893 2.0972 0.0005 29 1 2.8243 1.3263 0.8900 30 1 4.4425 -0.9632 -1.6036 31 1 3.4673 -0.6995 -3.0733 32 1 5.2238 -2.3258 -3.5834 33 1 4.7607 -3.3174 -2.1790 34 1 4.6522 -3.9958 -5.3308 35 1 4.6271 -5.0444 -3.8928 36 1 2.2986 -5.7136 -4.4216 37 1 2.3239 -4.6649 -5.8596 38 1 4.2116 -5.9785 -6.7855 39 1 4.1870 -7.0276 -5.3478 40 1 4.3659 -9.3869 -8.1704 41 1 1.5998 -4.4170 -3.5843 42 1 2.6895 -4.5127 -2.1796 43 1 1.0705 -2.0826 -3.0740 44 1 0.8102 -3.0592 -1.6047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608832259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = -91.697840 kcal Electronic energy + Delta-G solvation = -23965.719468 eV Core-core repulsion = 20464.953180 eV Total energy + Delta-G solvation = -3500.766288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11795 -38.53973 -37.12187 -36.97889 -36.77123 -35.17541 -33.02923 -32.10386 -29.08167 -28.96472 -26.83860 -25.57525 -24.94564 -24.10894 -22.07023 -21.23961 -19.96840 -18.97888 -18.49257 -18.42119 -17.38468 -16.66082 -16.32116 -16.13641 -16.01187 -15.87835 -15.68152 -15.32739 -15.21865 -14.65784 -14.35867 -14.18500 -13.89806 -13.57409 -13.50767 -13.44649 -13.35958 -13.20764 -13.00663 -12.74161 -12.69671 -12.66921 -12.54917 -12.41289 -12.25878 -11.94099 -11.87336 -11.44353 -11.30308 -11.06189 -10.55262 -10.24352 -10.04313 -9.28440 -8.19892 -6.30723 -0.57648 1.40685 1.40825 1.54341 1.77619 2.39215 2.41285 2.90169 3.13658 3.14998 3.57851 3.86012 3.99347 4.06779 4.18354 4.29917 4.36401 4.42405 4.46661 4.47793 4.55282 4.66522 4.68726 4.73799 4.75453 4.87984 4.91414 4.95038 4.96620 4.98987 5.05103 5.10969 5.16825 5.26499 5.36326 5.52317 5.67158 5.74308 5.85868 6.03738 6.11624 6.27017 6.86798 7.38731 8.92331 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.002746 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.422540 B =10193.551961 C =10617.593894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.012 6.012 3 C 0.083 3.917 4 S 2.796 3.204 5 O -1.004 7.004 6 O -1.002 7.002 7 N -1.008 6.008 8 C 0.128 3.872 9 C 0.037 3.963 10 N -0.532 5.532 11 C 0.066 3.934 12 C -0.096 4.096 13 C 0.025 3.975 14 C -0.540 4.540 15 H 0.061 0.939 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.280 1.280 22 C 0.031 3.969 23 C 0.130 3.870 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.054 0.946 37 H 0.060 0.940 38 H -0.007 1.007 39 H -0.014 1.014 40 H 0.263 0.737 41 H 0.096 0.904 42 H 0.021 0.979 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 23.639 14.600 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.855 5.855 3 C -0.062 4.062 4 S 2.805 3.195 5 O -0.988 6.988 6 O -0.986 6.986 7 N -0.849 5.849 8 C 0.003 3.997 9 C -0.093 4.093 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.134 4.134 13 C -0.012 4.012 14 C -0.578 4.578 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.099 4.099 23 C 0.004 3.996 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.012 0.988 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.039 0.961 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.228 23.426 14.992 28.501 hybrid contribution 0.157 -1.526 -0.262 1.557 sum -6.071 21.899 14.730 27.081 Atomic orbital electron populations 1.21733 0.76899 1.04511 1.02803 1.57613 1.16278 1.21961 1.89663 1.21756 0.97367 0.84874 1.02209 1.01427 0.72274 0.72886 0.72870 1.93560 1.67615 1.60251 1.77396 1.93546 1.41960 1.85731 1.77338 1.58091 1.30392 1.65102 1.31318 1.21645 0.85123 0.96090 0.96820 1.22550 0.95017 0.95920 0.95790 1.62024 1.10693 1.27285 1.25673 1.22065 0.96462 0.91281 0.96360 1.21552 0.97372 0.95997 0.98470 1.18973 0.95221 0.93121 0.93934 1.21728 0.93868 1.12265 1.29921 0.92032 1.26001 0.97751 0.99093 0.97185 1.70108 1.18031 1.29207 1.40217 0.85392 0.79379 0.78175 0.78059 1.18388 1.20339 1.20575 1.22626 0.94971 0.96607 0.95690 1.21613 0.89936 0.91325 0.96700 0.92289 0.88120 0.91230 0.91226 0.87531 0.92376 0.88034 0.88477 0.88073 0.95873 0.90640 0.96314 0.92721 0.92128 0.98838 0.99549 0.92820 0.88583 0.96100 0.88569 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.26 127.77 1.31 2.20 16 2 N -1.01 -14.51 3.64 -562.70 -2.05 -16.56 16 3 C 0.08 0.80 10.30 127.77 1.32 2.11 16 4 S 2.80 61.47 6.12 -56.49 -0.35 61.13 16 5 O -1.00 -28.13 15.82 -128.00 -2.02 -30.15 16 6 O -1.00 -27.00 15.91 -128.00 -2.04 -29.03 16 7 N -1.01 -20.31 3.39 -512.16 -1.73 -22.04 16 8 C 0.13 2.33 6.67 86.35 0.58 2.91 16 9 C 0.04 0.86 5.58 86.39 0.48 1.34 16 10 N -0.53 -14.83 4.78 -895.25 -4.28 -19.11 16 11 C 0.07 2.25 5.27 86.31 0.45 2.70 16 12 C -0.10 -3.90 4.40 30.59 0.13 -3.77 16 13 C 0.03 1.33 4.97 29.85 0.15 1.48 16 14 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 16 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 17 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 18 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.03 0.82 5.04 86.38 0.44 1.26 16 23 C 0.13 2.66 6.66 86.35 0.58 3.24 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.10 0.48 7.92 -2.38 -0.02 0.46 16 26 H 0.07 0.75 7.79 -2.39 -0.02 0.74 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.11 0.45 7.79 -2.39 -0.02 0.43 16 29 H 0.06 0.66 8.01 -2.39 -0.02 0.64 16 30 H 0.10 1.67 6.93 -2.39 -0.02 1.66 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 2.04 8.11 -2.38 -0.02 2.03 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.02 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.05 2.16 6.18 -2.39 -0.01 2.15 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 41 H 0.10 2.68 5.73 -2.39 -0.01 2.67 16 42 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.91 6.93 -2.39 -0.02 1.89 16 Total: -1.00 -74.51 358.47 -3.07 -77.58 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.96 Total: 5.70 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 6.13 Total: -16.82 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -7.78 Total: -114.84 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -4.06 Total: -59.18 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 61.47 SS G_CDS: -0.35 Total: 61.13 kcal Total: -74.51 -3.07 -77.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds