Wall clock time and date at job start Fri Apr 10 2020 17:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99538 * 2 1 4 4 C 1.46897 * 110.99854 * 123.95441 * 2 1 3 5 5 H 1.09000 * 110.81969 * 304.77870 * 4 2 1 6 6 C 1.54892 * 110.75382 * 181.44416 * 4 2 1 7 7 C 1.54262 * 104.19542 * 203.74273 * 6 4 2 8 8 C 1.53868 * 106.60049 * 23.61299 * 7 6 4 9 9 C 1.54269 * 106.59944 * 359.97438 * 8 7 6 10 10 H 1.09000 * 110.48517 * 95.19572 * 9 8 7 11 11 N 1.46494 * 110.48782 * 217.71607 * 9 8 7 12 12 S 1.65606 * 119.99695 * 263.54690 * 11 9 8 13 13 O 1.42103 * 106.39958 * 311.45396 * 12 11 9 14 14 O 1.42099 * 106.40185 * 178.53991 * 12 11 9 15 15 N 1.65593 * 107.22092 * 64.99633 * 12 11 9 16 16 C 1.46504 * 120.00019 * 90.00099 * 15 12 11 17 17 C 1.46502 * 120.00019 * 269.72762 * 15 12 11 18 18 C 1.50705 * 109.46897 * 265.27210 * 17 15 12 19 19 H 1.07996 * 120.00107 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99771 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47357 * 60.00237 * 22 20 18 24 24 H 1.48505 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47326 * 300.00034 * 22 20 18 26 26 H 1.09001 * 109.47288 * 296.04241 * 1 2 3 27 27 H 1.09003 * 109.47400 * 56.05105 * 1 2 3 28 28 H 1.09007 * 109.47193 * 176.04310 * 1 2 3 29 29 H 1.08997 * 109.47138 * 189.62970 * 3 2 1 30 30 H 1.08999 * 109.47432 * 309.63359 * 3 2 1 31 31 H 1.09001 * 109.47304 * 69.63977 * 3 2 1 32 32 H 1.09004 * 110.48109 * 85.06437 * 6 4 2 33 33 H 1.09003 * 110.59871 * 322.48128 * 6 4 2 34 34 H 1.08999 * 110.03609 * 264.32499 * 7 6 4 35 35 H 1.09006 * 110.02817 * 142.90043 * 7 6 4 36 36 H 1.08998 * 110.03242 * 240.71603 * 8 7 6 37 37 H 1.09003 * 110.03495 * 119.28320 * 8 7 6 38 38 H 0.97001 * 120.00684 * 83.53811 * 11 9 8 39 39 H 1.08999 * 109.46777 * 269.72541 * 16 15 12 40 40 H 1.09000 * 109.46724 * 29.72854 * 16 15 12 41 41 H 1.09000 * 109.46806 * 149.72445 * 16 15 12 42 42 H 1.08999 * 109.47262 * 25.27162 * 17 15 12 43 43 H 1.08997 * 109.47398 * 145.27709 * 17 15 12 44 44 H 0.97001 * 119.99606 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5917 -0.3902 2.0777 6 6 3.5439 -0.7321 1.1526 7 6 3.9422 -1.9948 1.9442 8 6 2.7624 -2.9759 1.8296 9 6 1.6879 -2.2749 0.9729 10 1 1.7791 -2.5724 -0.0717 11 7 0.3478 -2.5836 1.4778 12 16 -0.5345 -3.8053 0.7911 13 8 -0.4756 -3.6018 -0.6141 14 8 -1.7548 -3.8751 1.5157 15 7 0.2703 -5.2207 1.0928 16 6 -0.0231 -5.9855 2.3074 17 6 1.2713 -5.7111 0.1422 18 6 0.6274 -6.6915 -0.8042 19 1 -0.4225 -6.9254 -0.7075 20 6 1.3785 -7.2889 -1.7941 21 7 2.6570 -7.0037 -1.9121 22 14 0.5803 -8.5034 -2.9675 23 1 -0.5167 -7.8292 -3.7072 24 1 1.5950 -9.0007 -3.9311 25 1 0.0282 -9.6465 -2.1969 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0714 1.3476 -0.1719 30 1 1.5136 1.9456 -0.7914 31 1 1.7917 1.8388 0.9635 32 1 3.9009 0.1644 1.6595 33 1 3.9384 -0.7779 0.1375 34 1 4.1163 -1.7407 2.9897 35 1 4.8398 -2.4381 1.5129 36 1 2.3639 -3.1978 2.8195 37 1 3.0873 -3.8954 1.3427 38 1 -0.0227 -2.0726 2.2143 39 1 0.6355 -5.6571 3.1114 40 1 -1.0609 -5.8219 2.5979 41 1 0.1377 -7.0465 2.1163 42 1 1.6766 -4.8724 -0.4238 43 1 2.0765 -6.2059 0.6854 44 1 3.1853 -7.4237 -2.6088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615297140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:19 Heat of formation + Delta-G solvation = -72.605390 kcal Electronic energy + Delta-G solvation = -25383.138361 eV Core-core repulsion = 21883.199984 eV Total energy + Delta-G solvation = -3499.938378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.29367 -36.56485 -35.63694 -35.33885 -35.10051 -33.35717 -32.39799 -28.18461 -27.73969 -27.61345 -26.68581 -25.02632 -23.03091 -22.23947 -20.31110 -20.21948 -18.77604 -17.32220 -16.85942 -16.26706 -16.21169 -16.02334 -15.16989 -14.66106 -14.56213 -14.38710 -13.72630 -13.40621 -13.38423 -13.32585 -12.70292 -12.61211 -12.37007 -12.29016 -12.11714 -11.94356 -11.69993 -11.57874 -11.44300 -11.13344 -11.12216 -11.06049 -11.03459 -10.89066 -10.71407 -10.66613 -10.45824 -10.28267 -10.00646 -9.73790 -9.14599 -8.41105 -8.32756 -8.02900 -6.03642 -4.07215 1.27669 3.36055 3.39517 3.44334 3.56199 3.90883 4.15213 4.47123 4.51231 4.71731 4.97501 5.08631 5.16127 5.29380 5.30782 5.35872 5.43190 5.48559 5.53006 5.59758 5.66878 5.68470 5.70418 5.78856 5.83547 5.96680 6.04692 6.07967 6.09921 6.24642 6.30788 6.36899 6.53643 6.60786 7.04536 7.09657 7.15396 7.29055 7.44343 7.65077 7.93911 8.23703 8.94523 9.57822 11.04798 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.005257 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.563708 B = 5324.514005 C = 5692.342206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.024 3.976 4 C 0.076 3.924 5 H 0.052 0.948 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.143 4.143 9 C 0.157 3.843 10 H 0.112 0.888 11 N -1.129 6.129 12 S 2.779 3.221 13 O -0.959 6.959 14 O -1.002 7.002 15 N -0.995 5.995 16 C 0.097 3.903 17 C 0.259 3.741 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.405 0.595 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 13.548 9.795 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.258 5.258 3 C -0.124 4.124 4 C -0.034 4.034 5 H 0.070 0.930 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.183 4.183 9 C 0.049 3.951 10 H 0.130 0.870 11 N -0.885 5.885 12 S 2.786 3.214 13 O -0.942 6.942 14 O -0.987 6.987 15 N -0.838 5.838 16 C -0.050 4.050 17 C 0.137 3.863 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.237 0.763 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.538 13.253 8.598 15.872 hybrid contribution -0.451 -0.136 0.634 0.790 sum 1.087 13.117 9.232 16.077 Atomic orbital electron populations 1.22497 0.87087 1.03317 0.99844 1.61989 1.08152 1.13295 1.42390 1.22398 1.01141 0.88983 0.99864 1.22901 0.95460 0.93428 0.91580 0.93012 1.22387 0.93620 0.97858 1.01622 1.22028 0.98595 0.95234 0.99855 1.22664 0.95278 0.99575 1.00778 1.21665 0.80645 0.93520 0.99280 0.87011 1.56375 1.28828 1.52797 1.50544 1.02039 0.72775 0.72803 0.73751 1.93644 1.86164 1.84935 1.29475 1.93527 1.43206 1.87050 1.74884 1.57571 1.57590 1.37329 1.31339 1.21316 0.99701 0.98315 0.85621 1.19050 0.86016 0.95276 0.85984 1.21457 0.96372 1.24787 1.14284 0.92334 1.24908 0.94825 0.96913 0.97239 1.69903 1.06182 1.43558 1.33754 0.86596 0.79170 0.81167 0.80744 1.20010 1.21186 1.20251 0.96031 0.91441 0.90510 0.91154 0.91586 0.96051 0.91810 0.90011 0.92023 0.91155 0.91144 0.89849 0.76278 0.94345 0.91778 0.90467 0.94379 0.94820 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.19 60.07 0.55 0.82 16 2 N -0.53 -6.92 4.91 -240.78 -1.18 -8.10 16 3 C 0.02 0.24 9.17 60.06 0.55 0.80 16 4 C 0.08 0.93 2.25 -65.73 -0.15 0.78 16 5 H 0.05 0.58 8.05 -51.93 -0.42 0.17 16 6 C -0.12 -1.24 4.98 -25.07 -0.12 -1.36 16 7 C -0.12 -1.28 6.80 -25.62 -0.17 -1.45 16 8 C -0.14 -1.88 6.54 -25.61 -0.17 -2.05 16 9 C 0.16 2.29 2.71 -66.28 -0.18 2.11 16 10 H 0.11 2.01 7.31 -51.93 -0.38 1.63 16 11 N -1.13 -16.71 3.93 -3.49 -0.01 -16.72 16 12 S 2.78 54.92 5.92 -107.50 -0.64 54.29 16 13 O -0.96 -22.88 16.14 -57.17 -0.92 -23.80 16 14 O -1.00 -20.95 16.74 -57.17 -0.96 -21.91 16 15 N -1.00 -20.37 3.23 -123.05 -0.40 -20.76 16 16 C 0.10 1.66 10.68 59.85 0.64 2.30 16 17 C 0.26 6.33 4.79 -5.19 -0.02 6.30 16 18 C -0.53 -14.81 9.38 -34.44 -0.32 -15.13 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 28 H 0.08 1.18 5.80 -51.93 -0.30 0.88 16 29 H 0.07 0.65 7.19 -51.93 -0.37 0.27 16 30 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 31 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.85 8.04 -51.93 -0.42 0.44 16 37 H 0.08 1.27 7.85 -51.93 -0.41 0.86 16 38 H 0.41 4.91 8.77 -34.47 -0.30 4.61 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.05 7.01 -51.93 -0.36 0.69 16 41 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 42 H 0.04 0.99 7.34 -51.93 -0.38 0.61 16 43 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -32.94 359.57 -9.99 -42.93 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.52 Total: 2.07 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.50 Total: -5.18 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.86 Total: -70.69 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.88 Total: -45.71 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.64 Total: 54.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.94 -9.99 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.675 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds