Wall clock time and date at job start Fri Apr 10 2020 17:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99538 * 2 1 4 4 C 1.46897 * 110.99854 * 123.95441 * 2 1 3 5 5 H 1.09000 * 110.81969 * 304.77870 * 4 2 1 6 6 C 1.54892 * 110.75382 * 181.44416 * 4 2 1 7 7 C 1.54262 * 104.19542 * 203.74273 * 6 4 2 8 8 C 1.53868 * 106.60049 * 23.61299 * 7 6 4 9 9 C 1.54269 * 106.59944 * 359.97438 * 8 7 6 10 10 H 1.09000 * 110.48517 * 95.19572 * 9 8 7 11 11 N 1.46494 * 110.48782 * 217.71607 * 9 8 7 12 12 S 1.65606 * 119.99695 * 263.54690 * 11 9 8 13 13 O 1.42103 * 106.39958 * 311.45396 * 12 11 9 14 14 O 1.42099 * 106.40185 * 178.53991 * 12 11 9 15 15 N 1.65593 * 107.22092 * 64.99633 * 12 11 9 16 16 C 1.46504 * 120.00019 * 90.00099 * 15 12 11 17 17 C 1.46502 * 120.00019 * 269.72762 * 15 12 11 18 18 C 1.50705 * 109.46897 * 265.27210 * 17 15 12 19 19 H 1.07996 * 120.00107 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99935 * 179.97438 * 18 17 15 21 21 N 1.31518 * 119.99771 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47357 * 60.00237 * 22 20 18 24 24 H 1.48505 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47326 * 300.00034 * 22 20 18 26 26 H 1.09001 * 109.47288 * 296.04241 * 1 2 3 27 27 H 1.09003 * 109.47400 * 56.05105 * 1 2 3 28 28 H 1.09007 * 109.47193 * 176.04310 * 1 2 3 29 29 H 1.08997 * 109.47138 * 189.62970 * 3 2 1 30 30 H 1.08999 * 109.47432 * 309.63359 * 3 2 1 31 31 H 1.09001 * 109.47304 * 69.63977 * 3 2 1 32 32 H 1.09004 * 110.48109 * 85.06437 * 6 4 2 33 33 H 1.09003 * 110.59871 * 322.48128 * 6 4 2 34 34 H 1.08999 * 110.03609 * 264.32499 * 7 6 4 35 35 H 1.09006 * 110.02817 * 142.90043 * 7 6 4 36 36 H 1.08998 * 110.03242 * 240.71603 * 8 7 6 37 37 H 1.09003 * 110.03495 * 119.28320 * 8 7 6 38 38 H 0.97001 * 120.00684 * 83.53811 * 11 9 8 39 39 H 1.08999 * 109.46777 * 269.72541 * 16 15 12 40 40 H 1.09000 * 109.46724 * 29.72854 * 16 15 12 41 41 H 1.09000 * 109.46806 * 149.72445 * 16 15 12 42 42 H 1.08999 * 109.47262 * 25.27162 * 17 15 12 43 43 H 1.08997 * 109.47398 * 145.27709 * 17 15 12 44 44 H 0.97001 * 119.99606 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5917 -0.3902 2.0777 6 6 3.5439 -0.7321 1.1526 7 6 3.9422 -1.9948 1.9442 8 6 2.7624 -2.9759 1.8296 9 6 1.6879 -2.2749 0.9729 10 1 1.7791 -2.5724 -0.0717 11 7 0.3478 -2.5836 1.4778 12 16 -0.5345 -3.8053 0.7911 13 8 -0.4756 -3.6018 -0.6141 14 8 -1.7548 -3.8751 1.5157 15 7 0.2703 -5.2207 1.0928 16 6 -0.0231 -5.9855 2.3074 17 6 1.2713 -5.7111 0.1422 18 6 0.6274 -6.6915 -0.8042 19 1 -0.4225 -6.9254 -0.7075 20 6 1.3785 -7.2889 -1.7941 21 7 2.6570 -7.0037 -1.9121 22 14 0.5803 -8.5034 -2.9675 23 1 -0.5167 -7.8292 -3.7072 24 1 1.5950 -9.0007 -3.9311 25 1 0.0282 -9.6465 -2.1969 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8525 28 1 -0.3634 -1.0253 -0.0709 29 1 3.0714 1.3476 -0.1719 30 1 1.5136 1.9456 -0.7914 31 1 1.7917 1.8388 0.9635 32 1 3.9009 0.1644 1.6595 33 1 3.9384 -0.7779 0.1375 34 1 4.1163 -1.7407 2.9897 35 1 4.8398 -2.4381 1.5129 36 1 2.3639 -3.1978 2.8195 37 1 3.0873 -3.8954 1.3427 38 1 -0.0227 -2.0726 2.2143 39 1 0.6355 -5.6571 3.1114 40 1 -1.0609 -5.8219 2.5979 41 1 0.1377 -7.0465 2.1163 42 1 1.6766 -4.8724 -0.4238 43 1 2.0765 -6.2059 0.6854 44 1 3.1853 -7.4237 -2.6088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615297140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:18 Heat of formation + Delta-G solvation = -98.181396 kcal Electronic energy + Delta-G solvation = -25384.247420 eV Core-core repulsion = 21883.199984 eV Total energy + Delta-G solvation = -3501.047437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.31112 -38.26068 -37.22722 -36.85116 -36.47641 -34.52267 -34.47693 -29.65906 -29.14533 -28.53144 -27.71715 -26.76062 -24.19904 -23.97801 -21.39228 -21.25347 -20.20288 -19.02378 -18.40074 -18.16490 -17.60521 -17.09635 -16.81492 -16.28649 -15.56361 -15.51419 -15.14713 -14.98059 -14.66632 -14.44576 -14.10784 -13.91343 -13.82816 -13.63747 -13.34941 -13.21642 -13.13371 -13.07785 -13.02882 -12.93481 -12.61215 -12.45951 -12.36797 -12.33464 -12.03294 -11.95914 -11.83381 -11.73876 -11.71639 -11.23935 -10.57946 -10.37077 -9.76703 -9.23962 -8.18624 -6.30002 -0.31474 1.39099 1.42713 1.49626 2.05488 2.41266 2.63499 2.98405 3.12333 3.43959 3.48152 3.79830 4.02779 4.11856 4.26722 4.33970 4.40978 4.47277 4.50691 4.55700 4.61647 4.68753 4.73565 4.77252 4.79519 4.85986 5.03006 5.06927 5.08116 5.10280 5.19108 5.22382 5.29668 5.32616 5.49097 5.53470 5.71329 5.88779 6.12309 6.13240 6.18968 6.20319 6.77517 7.38387 8.88409 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.005257 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.563708 B = 5324.514005 C = 5692.342206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.560 5.560 3 C 0.026 3.974 4 C 0.082 3.918 5 H 0.072 0.928 6 C -0.110 4.110 7 C -0.113 4.113 8 C -0.142 4.142 9 C 0.152 3.848 10 H 0.069 0.931 11 N -1.106 6.106 12 S 2.794 3.206 13 O -1.006 7.006 14 O -1.014 7.014 15 N -1.002 6.002 16 C 0.090 3.910 17 C 0.279 3.721 18 C -0.552 4.552 19 H 0.048 0.952 20 C 0.015 3.985 21 N -0.920 5.920 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.275 1.275 25 H -0.264 1.264 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.422 0.578 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 14.689 11.458 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.284 5.284 3 C -0.122 4.122 4 C -0.028 4.028 5 H 0.090 0.910 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.181 4.181 9 C 0.044 3.956 10 H 0.088 0.912 11 N -0.868 5.868 12 S 2.802 3.198 13 O -0.989 6.989 14 O -0.998 6.998 15 N -0.843 5.843 16 C -0.055 4.055 17 C 0.155 3.845 18 C -0.592 4.592 19 H 0.067 0.933 20 C -0.185 4.185 21 N -0.560 5.560 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.189 1.189 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.258 0.742 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.949 14.392 10.294 17.801 hybrid contribution -0.595 -0.433 0.142 0.750 sum 1.354 13.958 10.436 17.481 Atomic orbital electron populations 1.22456 0.87636 1.01673 1.01116 1.61945 1.07999 1.15255 1.43197 1.22437 1.01526 0.87345 1.00875 1.22902 0.96591 0.91123 0.92196 0.91008 1.22377 0.92227 0.98970 1.01297 1.22019 0.97160 0.94457 1.01486 1.22625 0.95891 0.98949 1.00674 1.21702 0.80426 0.96103 0.97337 0.91236 1.55795 1.28833 1.51400 1.50747 1.01306 0.72599 0.73072 0.72789 1.93584 1.86853 1.85655 1.32836 1.93498 1.44155 1.87422 1.74718 1.57449 1.56703 1.38322 1.31873 1.21544 1.01075 0.97750 0.85140 1.18557 0.86313 0.93668 0.85937 1.21822 0.96131 1.25743 1.15479 0.93322 1.25689 0.95417 0.98618 0.98757 1.69992 1.07171 1.44421 1.34404 0.85701 0.78314 0.79340 0.78918 1.20537 1.20009 1.18867 0.94069 0.91004 0.93471 0.90321 0.91213 0.94523 0.88921 0.91341 0.89416 0.91367 0.89620 0.92790 0.74223 0.90816 0.90992 0.91140 0.96534 0.95385 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.19 127.69 1.17 1.67 16 2 N -0.56 -13.83 4.91 -915.69 -4.50 -18.33 16 3 C 0.03 0.45 9.17 127.69 1.17 1.62 16 4 C 0.08 1.85 2.25 46.20 0.10 1.95 16 5 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 6 C -0.11 -2.08 4.98 31.67 0.16 -1.93 16 7 C -0.11 -2.18 6.80 31.31 0.21 -1.97 16 8 C -0.14 -3.63 6.54 31.32 0.20 -3.42 16 9 C 0.15 4.44 2.71 46.06 0.13 4.57 16 10 H 0.07 2.66 7.31 -2.39 -0.02 2.64 16 11 N -1.11 -32.34 3.93 -164.96 -0.65 -32.99 16 12 S 2.79 112.49 5.92 -56.49 -0.33 112.15 16 13 O -1.01 -50.26 16.14 -128.00 -2.07 -52.33 16 14 O -1.01 -42.15 16.74 -128.00 -2.14 -44.29 16 15 N -1.00 -41.60 3.23 -543.21 -1.75 -43.35 16 16 C 0.09 3.02 10.68 127.77 1.36 4.39 16 17 C 0.28 14.11 4.79 85.63 0.41 14.52 16 18 C -0.55 -31.69 9.38 25.60 0.24 -31.45 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 20 C 0.02 0.86 5.46 84.66 0.46 1.32 16 21 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 22 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 28 H 0.05 1.47 5.80 -2.38 -0.01 1.46 16 29 H 0.08 1.25 7.19 -2.39 -0.02 1.23 16 30 H 0.07 1.17 8.02 -2.39 -0.02 1.15 16 31 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 32 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 33 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 38 H 0.42 9.53 8.77 -96.74 -0.85 8.68 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 2.29 7.01 -2.39 -0.02 2.27 16 41 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 42 H 0.02 0.91 7.34 -2.39 -0.02 0.90 16 43 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 44 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -72.57 359.57 -3.38 -75.94 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.13 Total: 18.50 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.63 Total: -8.72 kcal Atomic # 7 Polarization: -141.88 SS G_CDS: -6.61 Total: -148.49 kcal Atomic # 8 Polarization: -92.41 SS G_CDS: -4.21 Total: -96.62 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 112.49 SS G_CDS: -0.33 Total: 112.15 kcal Total: -72.57 -3.38 -75.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.240 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds