Wall clock time and date at job start Fri Apr 10 2020 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 119.99820 * 2 1 4 4 H 1.48498 * 109.47649 * 270.00183 * 3 2 1 5 5 H 1.48506 * 109.47240 * 30.00522 * 3 2 1 6 6 H 1.48502 * 109.46980 * 150.00339 * 3 2 1 7 7 C 1.38948 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00023 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99865 * 179.97438 * 10 9 7 13 13 N 1.46911 * 109.46979 * 170.44237 * 12 10 9 14 14 C 1.46755 * 111.00029 * 305.80020 * 13 12 10 15 15 C 1.53431 * 108.60168 * 285.43689 * 14 13 12 16 16 H 1.08993 * 109.77245 * 56.34957 * 15 14 13 17 17 C 1.50693 * 109.77311 * 177.09581 * 15 14 13 18 18 O 1.20829 * 119.99490 * 114.99928 * 17 15 14 19 19 O 1.34223 * 120.00446 * 294.99956 * 17 15 14 20 20 O 1.43145 * 107.89625 * 296.75105 * 15 14 13 21 21 C 1.36149 * 116.66829 * 45.35940 * 20 15 14 22 22 C 1.38779 * 118.74432 * 165.13124 * 21 20 15 23 23 C 1.38180 * 120.20643 * 179.68351 * 22 21 20 24 24 C 1.38261 * 120.02685 * 0.03589 * 23 22 21 25 25 C 1.38063 * 120.11515 * 0.09261 * 24 23 22 26 26 C 1.38959 * 121.38358 * 344.99054 * 21 20 15 27 27 H 0.97001 * 120.00398 * 359.97438 * 1 2 3 28 28 H 0.97008 * 120.00355 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47159 * 50.45035 * 12 10 9 30 30 H 1.08996 * 109.47677 * 290.43983 * 12 10 9 31 31 H 1.08999 * 109.61733 * 45.16948 * 14 13 12 32 32 H 1.08994 * 109.61725 * 165.70495 * 14 13 12 33 33 H 0.96697 * 117.00150 * 180.02562 * 19 17 15 34 34 H 1.07999 * 119.89872 * 359.67957 * 22 21 20 35 35 H 1.07991 * 119.98893 * 180.02562 * 23 22 21 36 36 H 1.07996 * 119.94388 * 180.36905 * 24 23 22 37 37 H 1.08007 * 119.88152 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1817 -5.9700 -0.2301 14 6 2.9632 -5.7517 -1.4529 15 6 2.0605 -6.0178 -2.6647 16 1 1.1757 -5.3836 -2.6116 17 6 2.8169 -5.7322 -3.9363 18 8 3.0622 -6.6293 -4.7077 19 8 3.2181 -4.4814 -4.2121 20 8 1.6721 -7.3951 -2.6298 21 6 1.2648 -7.8849 -1.4265 22 6 0.5907 -9.0975 -1.3931 23 6 0.1694 -9.6257 -0.1878 24 6 0.4182 -8.9460 0.9902 25 6 1.0859 -7.7378 0.9651 26 6 1.5134 -7.1984 -0.2442 27 1 -0.4851 0.8400 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.4951 -4.8506 -0.7921 30 1 0.7517 -4.9980 0.9632 31 1 3.3189 -4.7217 -1.4808 32 1 3.8119 -6.4353 -1.4717 33 1 3.6997 -4.3472 -5.0399 34 1 0.3947 -9.6299 -2.3121 35 1 -0.3544 -10.5698 -0.1658 36 1 0.0936 -9.3630 1.9321 37 1 1.2779 -7.2098 1.8876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:57 Heat of formation + Delta-G solvation = -108.148619 kcal Electronic energy + Delta-G solvation = -25372.347779 eV Core-core repulsion = 21501.872424 eV Total energy + Delta-G solvation = -3870.475356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 306.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53258 -39.99872 -38.51924 -37.51470 -36.22793 -35.93807 -34.01793 -31.49223 -31.25521 -30.43623 -29.08430 -26.80955 -25.01029 -24.15348 -22.41140 -22.32828 -20.37068 -19.30408 -18.50068 -17.97981 -17.87390 -17.31972 -16.96227 -16.03847 -15.79055 -15.45320 -15.00976 -14.75715 -14.66574 -14.50661 -14.14812 -13.71864 -13.66131 -13.57335 -13.18539 -12.88467 -12.42712 -11.87595 -11.72147 -11.64961 -11.63072 -11.53460 -11.32096 -11.18231 -10.89729 -10.57242 -10.46728 -10.32939 -9.58109 -9.48094 -8.52083 -8.34186 -8.09203 -7.90571 -6.53786 -3.95130 1.24421 1.35605 2.01692 2.24737 3.09739 3.20848 3.25842 3.43982 3.56524 3.71089 3.82552 4.10126 4.39202 4.68270 4.74605 4.80656 4.98272 5.03448 5.12178 5.27519 5.29420 5.34844 5.43891 5.62470 5.71852 5.91666 6.04538 6.09505 6.18884 6.24171 6.35553 6.45917 6.59063 6.85693 7.03925 7.40772 7.44556 7.78474 7.91556 8.44895 9.03995 9.37414 9.86752 10.63214 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.004494 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.260246 B = 6229.167297 C = 7516.357325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.434 3.566 11 O -0.576 6.576 12 C 0.043 3.957 13 N -0.457 5.457 14 C 0.018 3.982 15 C 0.058 3.942 16 H 0.112 0.888 17 C 0.498 3.502 18 O -0.499 6.499 19 O -0.496 6.496 20 O -0.291 6.291 21 C 0.087 3.913 22 C -0.129 4.129 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.083 4.083 26 C 0.033 3.967 27 H 0.274 0.726 28 H 0.393 0.607 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.093 0.907 33 H 0.417 0.583 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -13.191 -2.486 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.219 3.781 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.172 5.172 14 C -0.110 4.110 15 C -0.002 4.002 16 H 0.130 0.870 17 C 0.338 3.662 18 O -0.386 6.386 19 O -0.308 6.308 20 O -0.205 6.205 21 C 0.040 3.960 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.155 4.155 25 C -0.103 4.103 26 C -0.064 4.064 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.170 0.830 32 H 0.111 0.889 33 H 0.277 0.723 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.783 -13.353 -2.108 13.541 hybrid contribution -0.443 1.042 -1.083 1.567 sum -1.226 -12.311 -3.192 12.777 Atomic orbital electron populations 1.69607 1.06021 1.28475 1.49630 1.25296 0.95630 0.99881 0.96849 0.85834 0.79288 0.80569 0.78489 1.20289 1.20859 1.19282 1.19722 0.93467 0.81942 1.47988 0.87623 1.41869 1.09323 1.04552 1.62982 1.19517 0.88365 0.84378 0.85798 1.90469 1.13427 1.86543 1.55720 1.22136 0.93381 0.90188 1.02815 1.58787 1.23953 0.99525 1.34949 1.23442 0.95084 1.09296 0.83140 1.22367 1.00309 0.83593 0.93889 0.87018 1.22303 0.76824 0.80531 0.86554 1.90735 1.52739 1.46326 1.48789 1.84551 1.69556 1.30226 1.46484 1.86248 1.80585 1.24764 1.28902 1.19058 0.97594 0.95999 0.83378 1.20415 1.00409 0.94726 0.99264 1.20890 0.99870 0.99819 0.91559 1.20966 1.00809 0.95362 0.98386 1.20896 0.97541 0.95481 0.96358 1.18919 1.00413 0.94292 0.92760 0.91653 0.77330 0.92902 0.87988 0.83002 0.88895 0.72320 0.85183 0.85390 0.85570 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 13.05 55.50 0.72 -22.54 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.09 29.55 -169.99 -5.02 15.07 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.30 -7.91 9.68 -14.93 -0.14 -8.06 16 8 H 0.11 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.05 5.29 -10.97 -0.06 -13.11 16 10 C 0.43 9.47 7.13 -10.98 -0.08 9.39 16 11 O -0.58 -14.28 13.58 5.55 0.08 -14.21 16 12 C 0.04 0.74 5.18 -4.97 -0.03 0.71 16 13 N -0.46 -7.70 4.49 -172.18 -0.77 -8.47 16 14 C 0.02 0.31 4.83 -3.68 -0.02 0.29 16 15 C 0.06 0.91 3.34 -27.66 -0.09 0.82 16 16 H 0.11 1.68 6.81 -51.93 -0.35 1.33 16 17 C 0.50 7.58 7.68 36.00 0.28 7.86 16 18 O -0.50 -8.67 17.28 -25.41 -0.44 -9.11 16 19 O -0.50 -6.43 13.42 -39.24 -0.53 -6.96 16 20 O -0.29 -4.73 9.61 -39.93 -0.38 -5.12 16 21 C 0.09 1.30 6.47 -39.11 -0.25 1.05 16 22 C -0.13 -1.61 9.94 -39.40 -0.39 -2.00 16 23 C -0.10 -1.07 10.04 -39.59 -0.40 -1.46 16 24 C -0.14 -1.45 10.03 -39.64 -0.40 -1.85 16 25 C -0.08 -1.07 9.48 -39.31 -0.37 -1.44 16 26 C 0.03 0.50 5.12 -83.60 -0.43 0.07 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 28 H 0.39 8.93 7.90 -40.82 -0.32 8.61 16 29 H 0.05 0.83 6.91 -51.93 -0.36 0.47 16 30 H 0.10 1.57 7.87 -51.93 -0.41 1.16 16 31 H 0.15 2.94 5.01 -51.93 -0.26 2.68 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.42 3.22 9.10 45.56 0.41 3.64 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -32.03 321.47 -6.89 -38.92 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -2.91 Total: 14.73 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.42 Total: 5.94 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.11 Total: -44.12 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.27 Total: -35.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.03 -6.89 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.225 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds